Comparison of KIAA cDNA sequences between mouse and human (KIAA0129)
<<Original sequence data>>
mouse mKIAA0129 (msh25292) length: 3176 bp, CDS: 2 - 1363
human KIAA0129 (ha00496) length: 4453 bp, CDS: 11 - 1231
In this page, the longest coding region predicted by GeneMark
was assigned as CDS for each of mouse and human KIAA cDNAs.
They were colored in green. When the CDS positions were not identical
on the aligned sequences between mouse and human cDNAs, mouse cDNA
sequence was translated based on the human CDS information.
The amino acid sequence produced here may not be identical to the
protein sequence deduced (see Description).
<<Aligned sequence information>>
----------------------------------------------------------
region #match #mismatch %diff
----------------------------------------------------------
DNA
5'UTR: 31 - 40 3 7 70.0
CDS: 41 - 1262 982 235 19.3
3'UTR: 1263 - 4516 1061 874 45.2
amino acid
CDS: 41 - 1262 309 98 24.1
----------------------------------------------------------
<<Alignment>>
1 ----+----*----+----*----+----*----+----*----+----* 50
M A S E
msh25292 1 CCCGACCACACTGCACAGAGAACAGCGGTTGCCACTGAGAATGGCGAGCG 50
| |||||||| |||
ha00496 1 ..............................GTGGAGATGAATGGCGGGCG 20
M A G A
51 ----+----*----+----*----+----*----+----*----+----* 100
T T E A R A - F Q P D G A Y
msh25292 51 AGACTACCGAGGCGCGGGCGCC......CTTTCAGCCCGACGGGGCGTAT 94
| | |||| | ||| | || | ||| | || || |
ha00496 21 CGGCGACCGGGAGCCGGACCCCTGGGAGGTCGGAGCTTGTCGAGGGATGC 70
A T G S R T P G R S E L V E G C
101 ----+----*----+----*----+----*----+----*----+----* 150
G W R C P E H S E R P A E L F C R
msh25292 95 GGCTGGCGCTGTCCGGAGCACAGCGAACGCCCGGCTGAGCTCTTCTGTCG 144
||||||||||| |||||||| |||| ||| ||||||||||||||||||
ha00496 71 GGCTGGCGCTGCCCGGAGCATGGCGACCGCGTGGCTGAGCTCTTCTGTCG 120
G W R C P E H G D R V A E L F C R
151 ----+----*----+----*----+----*----+----*----+----* 200
R C G R C V C A L C P V L G A H R
msh25292 145 CCGCTGCGGCCGCTGTGTGTGCGCGCTCTGCCCGGTTCTGGGTGCGCACC 194
||||||| ||||||| ||||||||||| |||||||| ||||| |||||||
ha00496 121 CCGCTGCCGCCGCTGCGTGTGCGCGCTTTGCCCGGTGCTGGGCGCGCACC 170
R C R R C V C A L C P V L G A H R
201 ----+----*----+----*----+----*----+----*----+----* 250
G H P V G L A E E E A V R V Q K
msh25292 195 GCGGCCACCCGGTGGGCCTGGCCGAGGAGGAGGCTGTGCGTGTGCAGAAG 244
| |||||||| ||||||||||| ||||| || |||| ||||||||
ha00496 171 GTGGCCACCCTGTGGGCCTGGCGCTGGAGGCAGCGGTGCACGTGCAGAAA 220
G H P V G L A L E A A V H V Q K
251 ----+----*----+----*----+----*----+----*----+----* 300
L I Q D C L E C L A T K K R Q H A
msh25292 245 CTAATCCAGGACTGTTTAGAGTGTTTGGCAACCAAGAAGAGGCAACATGC 294
|| | ||| || |||||| || |||||| ||||||| ||| ||
ha00496 221 CTCAGCCAAGAATGTTTAAAGCAGCTGGCAATCAAGAAGCAGCAGCACAT 270
L S Q E C L K Q L A I K K Q Q H I
301 ----+----*----+----*----+----*----+----*----+----* 350
D N I A H L E D A G E R L K V Y A
msh25292 295 GGACAACATAGCCCATTTGGAAGACGCCGGGGAAAGGCTCAAGGTTTACG 344
||||||||| |||| | ||||| ||| || | |||||||| | | |
ha00496 271 TGACAACATAACCCAGATAGAAGATGCCACCGAGAAGCTCAAGGCTAATG 320
D N I T Q I E D A T E K L K A N A
351 ----+----*----+----*----+----*----+----*----+----* 400
D S S K A W L T Q K F T E L R L
msh25292 345 CAGACTCAAGTAAAGCCTGGCTGACACAGAAATTCACAGAACTCAGATTA 394
|||| ||||||||| ||||||||| ||||||||| ||||||||||||
ha00496 321 CAGAGTCAAGTAAAACCTGGCTGAAGGGGAAATTCACTGAACTCAGATTA 370
E S S K T W L K G K F T E L R L
401 ----+----*----+----*----+----*----+----*----+----* 450
L L D E E E V L A K K F I D K S T
msh25292 395 CTCCTGGATGAAGAGGAAGTACTGGCCAAAAAATTCATTGACAAAAGCAC 444
|| || || |||||||||| |||||||| ||||||||||| |||| |||
ha00496 371 CTACTTGACGAAGAGGAAGCGCTGGCCAAGAAATTCATTGATAAAAACAC 420
L L D E E E A L A K K F I D K N T
451 ----+----*----+----*----+----*----+----*----+----* 500
Q L T L Q V Y R E Q A E T C G K Q
msh25292 445 ACAGCTCACCCTCCAGGTGTACCGGGAGCAAGCCGAGACTTGTGGGAAGC 494
||||| ||||||||||||||| |||| ||||| || |||| | |||
ha00496 421 GCAGCTTACCCTCCAGGTGTACAGGGAACAAGCTGACTCTTGCAGAGAGC 470
Q L T L Q V Y R E Q A D S C R E Q
501 ----+----*----+----*----+----*----+----*----+----* 550
I E V M D D F S T R V W G I G Q
msh25292 495 AGATTGAGGTCATGGATGACTTCTCTACCAGGGTGTGGGGCATTGGCCAG 544
| |||| ||||| |||| |||| | |||||| ||| | || |||||
ha00496 471 AACTTGACATCATGAATGATCTCTCCAACAGGGTCTGGAGTATCAGCCAG 520
L D I M N D L S N R V W S I S Q
551 ----+----*----+----*----+----*----+----*----+----* 600
E P N P V Q L L Q A Y I A T K T E
msh25292 545 GAGCCCAACCCTGTTCAGCTGCTGCAGGCATATATAGCCACCAAGACAGA 594
|||||| | ||||| ||| ||| |||||||| | |||||| || ||
ha00496 521 GAGCCCGATCCTGTCCAGAGGCTTCAGGCATACACGGCCACCGAGCAGGA 570
E P D P V Q R L Q A Y T A T E Q E
601 ----+----*----+----*----+----*----+----*----+----* 650
M G Q Q M S P S E L S H P V P L S
msh25292 595 GATGGGACAGCAGATGAGCCCCTCGGAGCTGAGCCACCCTGTGCCCCTGT 644
|||| ||||||||||||| | ||||||| |||| || |||||||| |
ha00496 571 GATGCAGCAGCAGATGAGCCTCGGGGAGCTGTGCCATCCCGTGCCCCTCT 620
M Q Q Q M S L G E L C H P V P L S
651 ----+----*----+----*----+----*----+----*----+----* 700
F E P V K N F F K E F V E A I G
msh25292 645 CCTTCGAGCCTGTCAAGAACTTCTTTAAGGAGTTTGTGGAAGCCATCGGG 694
| || ||||| ||||||| ||||||||||| | ||||||||| | | |
ha00496 621 CTTTTGAGCCCGTCAAGAGCTTCTTTAAGGGCCTCGTGGAAGCCGTGGAG 670
F E P V K S F F K G L V E A V E
701 ----+----*----+----*----+----*----+----*----+----* 750
N T L Q T P M D T R L K E N I N C
msh25292 695 AACACGTTGCAGACACCAATGGACACTCGCCTGAAGGAAAACATAAACTG 744
| || || ||||| ||| |||||| |||||| ||||||| |||||||||
ha00496 671 AGTACATTACAGACGCCATTGGACATTCGCCTTAAGGAAAGCATAAACTG 720
S T L Q T P L D I R L K E S I N C
751 ----+----*----+----*----+----*----+----*----+----* 800
Q L S N S S S T K P G A L L K T S
msh25292 745 CCAGCTTTCAAACTCCTCCAGCACCAAGCCAGGCGCCTTGTTGAAAACCA 794
|||||| ||| || | ||||||||||||||||| |||||||||||||||
ha00496 721 CCAGCTCTCAGACCCTTCCAGCACCAAGCCAGGTACCTTGTTGAAAACCA 770
Q L S D P S S T K P G T L L K T S
801 ----+----*----+----*----+----*----+----*----+----* 850
P S P E R A L F L K Y A R T P T
msh25292 795 GCCCCTCGCCAGAGAGAGCTCTCTTCTTGAAATACGCCCGTACGCCAACG 844
||||||| |||||| || | || || |||||||||| || ||||| |||
ha00496 771 GCCCCTCACCAGAGCGATCGCTATTGCTGAAATACGCGCGCACGCCCACG 820
P S P E R S L L L K Y A R T P T
851 ----+----*----+----*----+----*----+----*----+----* 900
L D P D T M H A R L R L S P D G L
msh25292 845 CTGGACCCGGACACGATGCACGCGCGCCTGCGCCTGTCGCCGGACGGTCT 894
||||| || ||||||||||||||||||||||||||||| | || | ||
ha00496 821 CTGGATCCTGACACGATGCACGCGCGCCTGCGCCTGTCCGCCGATCGCCT 870
L D P D T M H A R L R L S A D R L
901 ----+----*----+----*----+----*----+----*----+----* 950
T V R C S L L G R L G P R P A P R
msh25292 895 GACAGTCCGCTGCTCGCTGCTGGGTCGCCTGGGGCCGCGTCCCGCGCCGC 944
||| || |||||| |||||||| |||||||||| |||| || ||
ha00496 871 GACGGTGCGCTGCGGCCTGCTGGGCAGCCTGGGGCCCGTGCCCGTGCTGC 920
T V R C G L L G S L G P V P V L R
951 ----+----*----+----*----+----*----+----*----+----* 1000
F D A L R Q V L G R D G F A A G
msh25292 945 GGTTCGACGCGCTGCGGCAGGTGCTGGGCCGCGACGGCTTCGCAGCCGGA 994
||||||||||||| |||| ||||||| || ||| ||||||| ||||
ha00496 921 GGTTCGACGCGCTCTGGCAAGTGCTGGCTCGTGACTGCTTCGCCACCGGC 970
F D A L W Q V L A R D C F A T G
1001 ----+----*----+----*----+----*----+----*----+----* 1050
R H Y W E V D V Q E A G V G W W V
msh25292 995 CGCCACTACTGGGAGGTGGACGTGCAGGAGGCCGGTGTGGGCTGGTGGGT 1044
||||||||||||||||| |||||||||||||| || | |||||||||||
ha00496 971 CGCCACTACTGGGAGGTTGACGTGCAGGAGGCGGGCGCCGGCTGGTGGGT 1020
R H Y W E V D V Q E A G A G W W V
1051 ----+----*----+----*----+----*----+----*----+----* 1100
G A A Y P S L R R R G A S A A A R
msh25292 1045 GGGCGCGGCGTACCCGTCGCTGCGCCGCCGCGGAGCCTCCGCCGCCGCCC 1094
||||||||| ||| | || || || |||||||| ||||| ||||||||||
ha00496 1021 GGGCGCGGCCTACGCCTCCCTTCGGCGCCGCGGGGCCTCGGCCGCCGCCC 1070
G A A Y A S L R R R G A S A A A R
1101 ----+----*----+----*----+----*----+----*----+----* 1150
L G C N R E S W C V K R Y D L E
msh25292 1095 GCCTGGGCTGCAACCGCGAGTCGTGGTGCGTAAAGCGTTACGACCTAGAG 1144
||||||||||||||||| |||| |||||| | ||||| |||||||| |||
ha00496 1071 GCCTGGGCTGCAACCGCCAGTCCTGGTGCCTCAAGCGCTACGACCTTGAG 1120
L G C N R Q S W C L K R Y D L E
1151 ----+----*----+----*----+----*----+----*----+----* 1200
Y W A F H D G Q R S A C G P A A T
msh25292 1145 TACTGGGCCTTCCATGACGGCCAGCGAAGTCGCCTGCGGCCCCGCCGCGA 1194
|||||||||||||| ||||||||||| || ||||||||||||||| |||
ha00496 1121 TACTGGGCCTTCCACGACGGCCAGCGCAG.CGCCTGCGGCCCCGCGACGA 1169
Y W A F H D G Q R S A C G P A T T
1201 ----+----*----+----*----+----*----+----*----+----* 1250
P T G S A S S W T T R P A F W P
msh25292 1195 CCCCCACCGGCTCGGCGTCTTCCTGGACTACGAGGCCGGCATTCTGGCCT 1244
|| | ||||||||||||||||||||||||||||||||||| | || ||||
ha00496 1170 CCTCGACCGGCTCGGCGTCTTCCTGGACTACGAGGCCGGCGTCCTCGCCT 1219
S T G S A S S W T T R P A S S P
1251 ----+----*----+----*----+----*----+----*----+----* 1300
S T T W
msh25292 1245 TCTACGACGTGGCGGGTGGCATGAGCCACTTGCACACCTTCCACGCCGCC 1294
||||||||||| |||| |||||||||||| |||| ||||||| |||| |
ha00496 1220 TCTACGACGTGACGGGCGGCATGAGCCACCTGCATACCTTCCGCGCCACG 1269
S T T *
1301 ----+----*----+----*----+----*----+----*----+----* 1350
msh25292 1295 TTCCAGGAGCCGCTCTATCCAGCCCTGCGCCTCTGGGAGGGGCCCATCAG 1344
||||||||||||||||| || |||||||| |||||||||||| |||||||
ha00496 1270 TTCCAGGAGCCGCTCTACCCGGCCCTGCGGCTCTGGGAGGGGGCCATCAG 1319
1351 ----+----*----+----*----+----*----+----*----+----* 1400
msh25292 1345 CATCCCTAGGTTGCCCTAAGGGAAA......................... 1369
|||||| || ||||||| ||| |
ha00496 1320 CATCCCCCGGCTGCCCTAGGGGCCAGGACCGGCGTGACAGCCTCCAGGTA 1369
1401 ----+----*----+----*----+----*----+----*----+----* 1450
msh25292 1370 .................................................. 1370
ha00496 1370 CGCCGCAGCTGCCCAGTCTCGCCTAATCTACCTAGATCAGCGTGGCTGGT 1419
1451 ----+----*----+----*----+----*----+----*----+----* 1500
msh25292 1370 .................................................. 1370
ha00496 1420 CCCCTTACTGCCTGCTTCTTAGGGCCCTCTCCCTGCCCCAGCTTTCCCCG 1469
1501 ----+----*----+----*----+----*----+----*----+----* 1550
msh25292 1370 ......................TCGGGCTTTCTTTTCCTAGGCTTGTCTC 1397
| | |||| | ||||||||| || ||
ha00496 1470 ACCAATCACGCCTACAGTGCTTTGAAGGTTTCCTCTCCTAGGCTAGTTTC 1519
1551 ----+----*----+----*----+----*----+----*----+----* 1600
msh25292 1398 CAGTTGTCC................................CCTGTGCGC 1415
| | || ||| || |
ha00496 1520 AAACAGGCCCTAAACAAGTCTGCTGCTGCCCTCTCATCAGACCTCCGCAC 1569
1601 ----+----*----+----*----+----*----+----*----+----* 1650
msh25292 1416 CCTGCCCCC.....CAACGATGCCTTTATAGTGCATATTCCTGAAAGGGG 1460
||| |||| || | | | || | || | | | |||| |
ha00496 1570 CCTCACCCCACCATCACTTAAACTACTTTAATCCAGTTCCTTCAAAGTGA 1619
1651 ----+----*----+----*----+----*----+----*----+----* 1700
msh25292 1461 CACCCC..............................GCTGCCTGTGTCTG 1480
||||| | || | |||
ha00496 1620 TACCCCCACAGGTAAGCCCTCAGCATCCTGAATACATCATCCGCAGCCTG 1669
1701 ----+----*----+----*----+----*----+----*----+----* 1750
msh25292 1481 GGAGACT.....ATCGTGCAGCGCCTAGAACCTCCTGGCACACAGTAGGC 1525
||| || |||| |||| | | |||| |||| |||||||
ha00496 1670 GGAACCTTCTCCCTCGTACAGC....ACAGGAACCTGACACATAGTAGGC 1715
1751 ----+----*----+----*----+----*----+----*----+----* 1800
msh25292 1526 ACACAGT............ATCAGTGAATGTCTCCCAGCAGGGGCAAGTA 1563
||||||| || | || ||| |||| | | |
ha00496 1716 ACACAGTAAACGTTTGTGAATGAATGGGAGTCATCCAGTCCTGACTCTTC 1765
1801 ----+----*----+----*----+----*----+----*----+----* 1850
msh25292 1564 GTTCCCCTACAGTTTC.CGTTTGAGCCAGCTGCTCTACAGCCACTTCAGC 1612
|| | | || | | | || | ||| || | | ||||||
ha00496 1766 TGTCTCTTGAGGTCCCTTGAATCTTCCGCTTCCTCCCCACCGATTTCAGC 1815
1851 ----+----*----+----*----+----*----+----*----+----* 1900
msh25292 1613 TTGTCCAGGTCGCCTTGATCCAGAGCACCTGAGAGGGTT......CTTGT 1656
|||||| || | | || | ||| || | | | |
ha00496 1816 GTGTCCACATCACAGCTCCCTCCAGAAGCTGCAAGAGCTTCTTAGCAGTT 1865
1901 ----+----*----+----*----+----*----+----*----+----* 1950
msh25292 1657 CTGAGTCTGCATCCTCTTGC.TTCTTCATCTTCTACACTAAAACCAGGGT 1705
| ||||| | ||||| | || |||||||| || ||||||| || ||
ha00496 1866 CCTGGTCTGAACCCTCTCCCAGTCCTCATCTTCCACCCTAAAACTAGAGT 1915
1951 ----+----*----+----*----+----*----+----*----+----* 2000
msh25292 1706 GGGCATCCTGAAACTTAGCTTGGCCTCT...........TGGGATTAGAG 1744
| | |||| |||||| ||| || || || | |
ha00496 1916 GATCTTCCTAAAACTTCACTTAACCCCTCAGCTATGAAAAGGCTTCCAGG 1965
2001 ----+----*----+----*----+----*----+----*----+----* 2050
msh25292 1745 GGAGGCTCTGTAAGAGCTACAAAAACAACACGGGAAGCGCTTT....... 1787
| | || || | | | ||||| ||| | | | | ||
ha00496 1966 AGTTTCCATGAAATAACAAAAAAAAATACAAGCGCCTCACCTTAGCATTC 2015
2051 ----+----*----+----*----+----*----+----*----+----* 2100
msh25292 1788 .........................................TCCCATGTC 1796
| | | |
ha00496 2016 AAGGCTTGTCTAGTCTGCCCAAAATTACTTATCCTCACCTAGCTCCTACC 2065
2101 ----+----*----+----*----+----*----+----*----+----* 2150
msh25292 1797 AATCTTTTTCAGACATGCTCCGGTCAG.AAGCTAGATCACAGTTGCACCT 1845
| |||| || ||| | |||| ||||| || | || |||| |||||
ha00496 2066 ACTCTTCTT.AGAGACTCTCCAGTCAGAAATGTGTCGCATAGTTCCACCT 2114
2151 ----+----*----+----*----+----*----+----*----+----* 2200
msh25292 1846 TTGAACCATTGTGCTTCCCACCATAAATAGGAAAACCGGCTCTCTGCCTG 1895
||| | |||| || | | | || | || | ||||
ha00496 2115 CCACACCTCTCTGCTGCCAGCACATTCATGCAGAAAAGTCTTTTCACCTG 2164
2201 ----+----*----+----*----+----*----+----*----+----* 2250
msh25292 1896 TGTCAG...TTCTCAGGCATATCTGCCCC...................CA 1923
| |||| | | ||||| || |||| || ||
ha00496 2165 TCTCAGTCTTCCGCAGGCTTACCTGCGCCAGGAAGTCTAACCAAGGAACA 2214
2251 ----+----*----+----*----+----*----+----*----+----* 2300
msh25292 1924 AGAAATTCCCTCCCAAGCCCCCAAA......................... 1948
|||| || || || || ||||
ha00496 2215 AGAATCTCACTATCAGAGCCACAAATCTGGGACCTGTCTTTCCAACTAAA 2264
2301 ----+----*----+----*----+----*----+----*----+----* 2350
msh25292 1949 .............AACAACAGATTGGGCCTGCAAATCCCTCCAC...... 1979
|| ||| || | ||| | || ||||||
ha00496 2265 TTGGAGGCTTTGGAAGGGCAGCTTTGTCCT.ATACTCTCTCCACCCTGAA 2313
2351 ----+----*----+----*----+----*----+----*----+----* 2400
msh25292 1980 .................................................. 1980
ha00496 2314 AAGTTCCCAGAAAGCCCCTTCCCTCCCAAGCAGTGAATTAATAACCAGCA 2363
2401 ----+----*----+----*----+----*----+----*----+----* 2450
msh25292 1980 .................................................. 1980
ha00496 2364 GGTGCCTATCACTGAGTAACAGAAGAGCTGAGTTAGGCGGGCCTCACAGG 2413
2451 ----+----*----+----*----+----*----+----*----+----* 2500
msh25292 1980 .................................................. 1980
ha00496 2414 TCACCCAGCCAGATCTCATCTGGGGAGTCTGAGGTCCTGAAAGAAAGCAG 2463
2501 ----+----*----+----*----+----*----+----*----+----* 2550
msh25292 1980 .................................................. 1980
ha00496 2464 AGCTGCGTAAAGTTACCCCGGGGTGATATAGGGGGGCCAGACGTGTGCCC 2513
2551 ----+----*----+----*----+----*----+----*----+----* 2600
msh25292 1980 ....CACACCCCCTCAGAAAACTATTAGGCCTGT................ 2009
||| | ||| ||| || || | |||||
ha00496 2514 CGTTCACCCACCCCCAGGCAAGCATCTGACCTGTCCCCTGGCCCAGCCCT 2563
2601 ----+----*----+----*----+----*----+----*----+----* 2650
msh25292 2010 .................................................. 2010
ha00496 2564 TAGGCCCAGCTTTCAACCTGCTTACTCATTTCTCAGGGGATTTTGGGAAG 2613
2651 ----+----*----+----*----+----*----+----*----+----* 2700
msh25292 2010 .................................................. 2010
ha00496 2614 GAATCAGCAGGTGACAGTTGCTAAGCAACCAAAGGGCGTGGTGTTTCCCA 2663
2701 ----+----*----+----*----+----*----+----*----+----* 2750
msh25292 2010 .................................................. 2010
ha00496 2664 ACTGTCTTGGGACAAAAAGGGTAAGAGCACCCTTAGATCCAGATGTTGCC 2713
2751 ----+----*----+----*----+----*----+----*----+----* 2800
msh25292 2010 .................................................. 2010
ha00496 2714 AAGGAAACCCAGAGTGCCCAGCTGTCTGGAATGAAGTGACAGAGGTAGAA 2763
2801 ----+----*----+----*----+----*----+----*----+----* 2850
msh25292 2010 .................................................. 2010
ha00496 2764 AACAGTAGGCCCTCACAGGAGGCCACCTTCGCTAGCAGGGAGTGGGAGGC 2813
2851 ----+----*----+----*----+----*----+----*----+----* 2900
msh25292 2010 ................................AAATCTGGGACCTGTCAC 2027
|||| | |||||
ha00496 2814 TTCTTTCCAGGGATTTGTGTCTCCGTTCTGAAGGTTCTGCGTCCTGTTTT 2863
2901 ----+----*----+----*----+----*----+----*----+----* 2950
msh25292 2028 TCCAGTTACTTTCTAAGGACATCCGTGTCCTTCCCTCCCAGGCACTTCCT 2077
|| || | | | || ||| | || |||| |
ha00496 2864 GTCAATTCCCTAGACGGTTTTGAAGTTATATTCTGTTAAAGCATCTTCAT 2913
2951 ----+----*----+----*----+----*----+----*----+----* 3000
msh25292 2078 GGGTGATCAGTAGG.................................... 2091
|||| | || ||
ha00496 2914 AGGTGCTTGGTGGGAGGCCAAGGTCGCCGAATCCTCGTGGTTTAAATAGA 2963
3001 ----+----*----+----*----+----*----+----*----+----* 3050
msh25292 2092 .................................................. 2092
ha00496 2964 CTTTCAGTGCATTAGTTTGAACCATATAAAACTGACAATTTTCAATAGTT 3013
3051 ----+----*----+----*----+----*----+----*----+----* 3100
msh25292 2092 .................................................. 2092
ha00496 3014 TTTGAGTTAAAAATGGCACTTTTGATATGAGACAATGTAGCAGAATACCA 3063
3101 ----+----*----+----*----+----*----+----*----+----* 3150
msh25292 2092 ........................TAGACTGCTACCCACAGGAGAGAAAA 2117
| ||| ||| ||| || ||||
ha00496 3064 GGCAGACAGAACCTTGCAAACACCTTAACTTCTAACCAAAGACTTTAAAA 3113
3151 ----+----*----+----*----+----*----+----*----+----* 3200
msh25292 2118 CT...ACTGAGATGGGTTCAAAG........................... 2137
|| ||| | ||| |||
ha00496 3114 CTCTGGCTGGACAGAGTTTTAAGCACTATGCTGCAGGAATCCTGAGAAAA 3163
3201 ----+----*----+----*----+----*----+----*----+----* 3250
msh25292 2138 .................................................. 2138
ha00496 3164 AGGGGAAATTAATTCTATTAGGAATGGCCCAAACTGAATTGTGACAGGCA 3213
3251 ----+----*----+----*----+----*----+----*----+----* 3300
msh25292 2138 ..GGCAGGACATACCTAACGGGAGATG..............CTACATCTT 2171
|| | | | | | || ||||| | |||| |
ha00496 3214 GAGGGTGTTCCTGACAGAGGGAAGATGAATACACTTGACCCCAACATTTC 3263
3301 ----+----*----+----*----+----*----+----*----+----* 3350
msh25292 2172 CGTCATTCAC..ATGACC.AGAGCTTTAACCACACCCTCCACTGCAGGAG 2218
| | || | |||||| ||| || | ||| |||| | |||||| |
ha00496 3264 TGCCCATCCCTGATGACCAAGACCTCTTCCCAGACCCACAGCTGCAG..G 3311
3351 ----+----*----+----*----+----*----+----*----+----* 3400
msh25292 2219 GGGCCAGGCCAGGCATCTCTTACTAGGTGCTGTTGAAC.......ATAGT 2261
|| | || || |||||| ||| | | || || || |
ha00496 3312 GGCCAAGTAATAACAGCTCTTAATAGTTTATAATGCACTGTTTTAATGCT 3361
3401 ----+----*----+----*----+----*----+----*----+----* 3450
msh25292 2262 CATACACTACACACACTTGACCCTTACA...................... 2289
|||| || || ||| |||| ||
ha00496 3362 TTACGACTAAACTCATCTGATCCTTTCATCAGCCCTAGAGGGTAGAAAGT 3411
3451 ----+----*----+----*----+----*----+----*----+----* 3500
msh25292 2290 ...AACTGTTGTACCCCTGGCAGGATTGGTA........CACGTGAATCA 2328
| || ||| | ||||| || | | ||| || |
ha00496 3412 TTTCCCAATTCTACACATGGCAAAATGGAGACCCAGAGTCACTTGCCCAA 3461
3501 ----+----*----+----*----+----*----+----*----+----* 3550
msh25292 2329 GATAACAGAATCAGTGTTTCAGTCAGGATCCACACTGCCTGCCAGGCTGT 2378
| | || | |||| | || | || | |||||||||
ha00496 3462 GGTCGCACAGCTAGTGGTGGAGCTGGAGTCTGGGC......CCAGGCTGT 3505
3551 ----+----*----+----*----+----*----+----*----+----* 3600
msh25292 2379 GCTGTGGATGTGACAGCTCTTCTCCCTCAGTATTTACCTCAGTTTTCCTT 2428
| | | || |||| | || ||| ||| | |
ha00496 3506 GAGTTCCAGGTCTGTGCTCATGGCCACCAGGCCATAC.......TGCTCA 3548
3601 ----+----*----+----*----+----*----+----*----+----* 3650
msh25292 2429 GGGGCAAACCTGCTTCTAGAATGCC.........TTCATTGGTCCCTGAA 2469
||| || | ||| | ||| | | ||| ||||
ha00496 3549 GGGTGAATGCAGCTGGTCTCTGGCCAGTGCCTGGTGCTCTGGCCCCTCTC 3598
3651 ----+----*----+----*----+----*----+----*----+----* 3700
msh25292 2470 ATGAGGTTTCATACCCTTCAGGCT....GAGGGATGAAATCGTTTGAGGG 2515
|| | | | | ||| | | ||| || | | | || | |
ha00496 3599 GTGGAGCTAC.TGCCCATGATGCTTTCCTAGTGCCTGGTTACTCTGCGAG 3647
3701 ----+----*----+----*----+----*----+----*----+----* 3750
msh25292 2516 GATCTTAGCTTCCTGTCAGCTGTGTGGCCCCCATATGTAAAACGTGG..G 2563
| || ||| | ||| | | | | | | | ||
ha00496 3648 ACTTGAGTCTACCTTTGGACTGCCTTCCTTGGGGGTCTGAGATGAGGCCT 3697
3751 ----+----*----+----*----+----*----+----*----+----* 3800
msh25292 2564 TCAGTGCCAGGTTTAAACAAGCCAAATTGCCTTAAAAACTATAATGTCGA 2613
| | |||| ||| | | || | || | ||
ha00496 3698 TATGGCCCAGAGGGGAACTTGATTCAAAAATTTGGGATTCATGTAGCAGA 3747
3801 ----+----*----+----*----+----*----+----*----+----* 3850
msh25292 2614 ATCAGGCTAGGATTTGTTAGCACCTCCAATAGATTCTTTCTACCTTGTCG 2663
||| || | || | | ||| | | | ||
ha00496 3748 GACAGAGCTAGACTGTAAAGGTCACAAACTAGCTGTGTCAAGGCCCGTGA 3797
3851 ----+----*----+----*----+----*----+----*----+----* 3900
msh25292 2664 CAGTGCTGGACCACAGATGGCCAGCAGCTGGGTGGCAGCCAAGGGAGCTA 2713
|| | | | | | | | | ||||
ha00496 3798 TAGCCAGAAAGCGGCAGTTTCAGTCCATATCAATTGTGTGACCAGGGCTA 3847
3901 ----+----*----+----*----+----*----+----*----+----* 3950
msh25292 2714 GCTGCCTTAATATTCTCAGGGGAGTCTCCTTGGCATCCATGCTGTTGACA 2763
| | || |||||| | | | || | | | | ||
ha00496 3848 GTCACTTTTTACTTCTCA...GTGCCATCTATAAAATGGGGATAATAGCA 3894
3951 ----+----*----+----*----+----*----+----*----+----* 4000
msh25292 2764 GTACAAAGCATACGTCTTCACGCT........CCTGACTTTGTAGAATTT 2805
||| | || | | | ||| || | || || | ||
ha00496 3895 CTACCTACCAAGTGCTGTGAGGCTCAAATGAGCCAAAGGTTATAAACTTG 3944
4001 ----+----*----+----*----+----*----+----*----+----* 4050
msh25292 2806 ACCTCAAA....GGTACACAATTGATTTTCCCGGTGCTTGGTCTAGAACC 2851
| | ||| || | | | || | | || |||| | |
ha00496 3945 CCTTAAAACTATAGTCCTATACAAAAATTAGCTGGGCGTGGTGGTGCATG 3994
4051 ----+----*----+----*----+----*----+----*----+----* 4100
msh25292 2852 AGTGGCCTTGCACAAGCTGAGCAAGGGCTTCAGGCCCAACAGGTGTTTGT 2901
|| | | |||| | | | |||| | || || |||
ha00496 3995 CCTG...TAATCCCAGCTACTAGGGAGGCTGAGGCAAGAGAGTTGCTTGA 4041
4101 ----+----*----+----*----+----*----+----*----+----* 4150
msh25292 2902 AAGAAAAAGGCTTAG...............................TCAA 2920
| | |||| || || |
ha00496 4042 ACCCAGGAGGCGGAGATTGCAGTGAGCTGAGATTGCACCACTGCACTCCA 4091
4151 ----+----*----+----*----+----*----+----*----+----* 4200
msh25292 2921 GGCCAGGGA.AGTGGAGGACAGAAACCTCTGTGACAAGTTTTCTTTTTCT 2969
| | |||| || | | ||| ||| | ||
ha00496 4092 GCCTGGGGACAGAGCAAGACTCTTGTCTCAAAAAAAACAAAAAAAACATA 4141
4201 ----+----*----+----*----+----*----+----*----+----* 4250
msh25292 2970 TACTTTGGTTTTTCGAAACAGGGTTTCTCTGTGTAGCCCTG...GCTGTC 3016
|| || | | || |||| ||| || | | || | ||| |
ha00496 4142 TATACTGCTGTATCATGCCAGGATTTATCAGCATTCCCAAGGGAGCTTGC 4191
4251 ----+----*----+----*----+----*----+----*----+----* 4300
msh25292 3017 CTGGAACTCAC..TTTGTAGACCATGCTGGCCTCGAACTCAGCAATCTGC 3064
|| ||| || || || | |||| | | || || ||
ha00496 4192 ACGGTACTGACCGAGTGCTGAGACTACTGGTATTCCCAGCTGCCATGTGG 4241
4301 ----+----*----+----*----+----*----+----*----+----* 4350
msh25292 3065 CTGCCTC........................................... 3071
| || |
ha00496 4242 CAGCAGCAGGAGCTACTAGAATATTCTCAGCACAGGAATGAGGCTTCCTT 4291
4351 ----+----*----+----*----+----*----+----*----+----* 4400
msh25292 3072 .................................................. 3072
ha00496 4292 GGTTTCCATGTCTGTAAGGGTTACTGATCACTTACCTTCTTCTCTTTCAG 4341
4401 ----+----*----+----*----+----*----+----*----+----* 4450
msh25292 3072 ...TGCCTCCCGAGTGCTGGGATTAAAGGTGTGCACCACCACACCCAGCT 3118
|| || || | ||| | | || | | ||| |
ha00496 4342 ACTTGAATCTGTAGACATTTCTTTATTGATATGGCAAATTGCTTGCAGAT 4391
4451 ----+----*----+----*----+----*----+----*----+----* 4500
msh25292 3119 ........CAGACAACAGCTTTCTAATACATGCTTTGTTTAATAAAATAG 3160
|||| || ||||||||| || ||||||||||||
ha00496 4392 ATTTTTAAATGACAGCAATTTTCTAATA....TTTGGTTTAATAAAATGT 4437
4501 ----+----*----+- 4516
msh25292 3161 GAATACTGTTCCTTGT 3176
||||| ||| |||| |
ha00496 4438 GAATAATGTCCCTTTT 4453