Comparison of KIAA cDNA sequences between mouse and human (FLJ00017)
<<Original sequence data>>
mouse mFLJ00017 (msh09230) length: 2737 bp, CDS: 39 - 1265
human (as00017) length: 4459 bp, CDS: 3 - 878
In this page, the longest coding region predicted by GeneMark
was assigned as CDS for each of mouse and human KIAA cDNAs.
They were colored in green. When the CDS positions were not identical
on the aligned sequences between mouse and human cDNAs, mouse cDNA
sequence was translated based on the human CDS information.
The amino acid sequence produced here may not be identical to the
protein sequence deduced (see Description).
<<Aligned sequence information>>
----------------------------------------------------------
region #match #mismatch %diff
----------------------------------------------------------
DNA
5'UTR: 19 - 57 9 6 40.0
CDS: 58 - 921 648 102 13.6
3'UTR: 922 - 4539 1151 779 40.4
amino acid
CDS: 58 - 921 221 67 23.3
----------------------------------------------------------
<<Alignment>>
1 ----+----*----+----*----+----*----+----*----+----* 50
H Q S T
msh09230 1 GACTGGTCCTCTTGGCTACCCACCAGAGCAGCAGCTGAGCTGGCAAGGCA 50
| || |||||
as00017 1 ..................GCGACAGGAGCA.................... 12
D R S T
51 ----+----*----+----*----+----*----+----*----+----* 100
G P P F P - G F R M D V C H T
msh09230 51 AGCAGCTGGGCCACCTTTCCCCTG.GGCTTCAGAATGGATGTGTGTCACA 99
| || | | ||||||| | ||| || ||||||| |||| |||
as00017 13 .....CGGGTCATCTTTTCCCCAGAGGCGTCGGAATGGACCTGTGCCACC 57
G H L F P R G V G M D L C H P
101 ----+----*----+----*----+----*----+----*----+----* 150
D P A E L S S G E A K E L Q Q I
msh09230 100 CAGATCCAGCTGAGCTCAGCAGTGGGGAGGCCAAGGAGCTACAGCAGATC 149
|||| || || ||||| ||||| |||||| | | ||| ||||| ||||
as00017 58 CAGAGCCCGCGGAGCTGAGCAGCGGGGAGACGGAAGAGTTACAGAGGATC 107
E P A E L S S G E T E E L Q R I
151 ----+----*----+----*----+----*----+----*----+----* 200
K W H R K Q L L E D I Q K L K D E
msh09230 150 AAATGGCACAGGAAGCAGCTACTGGAAGACATCCAGAAACTGAAGGATGA 199
|| |||||| | |||||||| ||||| ||||||||||| |||||||||||
as00017 108 AAGTGGCACCGAAAGCAGCTCCTGGAGGACATCCAGAAGCTGAAGGATGA 157
K W H R K Q L L E D I Q K L K D E
201 ----+----*----+----*----+----*----+----*----+----* 250
I A D V F A Q I D C F E S T E E S
msh09230 200 GATTGCAGATGTGTTTGCCCAAATCGACTGCTTTGAAAGCACTGAGGAGA 249
||||||||||||||||||||||||||||||||| || || | |||||||
as00017 158 GATTGCAGATGTGTTTGCCCAAATCGACTGCTTCGAGAGTGCGGAGGAGA 207
I A D V F A Q I D C F E S A E E S
251 ----+----*----+----*----+----*----+----*----+----* 300
R M A Q K E K E M C I G R K K F
msh09230 250 GCCGGATGGCGCAGAAAGAGAAGGAGATGTGCATCGGGAGAAAGAAATTC 299
|||||||||| ||||| ||||||||| |||| || ||| | ||||| |||
as00017 208 GCCGGATGGCCCAGAAGGAGAAGGAGCTGTGTATTGGGCGCAAGAAGTTC 257
R M A Q K E K E L C I G R K K F
301 ----+----*----+----*----+----*----+----*----+----* 350
N M D P N K G I Q Y L I E H K L L
msh09230 300 AACATGGACCCTAATAAGGGCATCCAGTATCTCATTGAGCACAAGCTGCT 349
||||||||||| ||||| ||||||||| |||||||||||||||||||
as00017 258 AACATGGACCCCGCCAAGGGTATCCAGTATTTCATTGAGCACAAGCTGCT 307
N M D P A K G I Q Y F I E H K L L
351 ----+----*----+----*----+----*----+----*----+----* 400
T S D V Q D I A Q F L Y K G D G L
msh09230 350 GACCTCTGATGTCCAGGACATCGCCCAGTTCCTGTACAAGGGTGACGGTC 399
|||| |||| ||||||||||| || | ||||||||| || || || || |
as00017 308 GACCCCTGACGTCCAGGACATTGCACGGTTCCTGTATAAAGGCGAGGGCC 357
T P D V Q D I A R F L Y K G E G L
401 ----+----*----+----*----+----*----+----*----+----* 450
N K T A I G T Y L G E K D P I N
msh09230 400 TCAACAAGACAGCCATTGGCACCTACTTGGGGGAAAAGGACCCCATCAAC 449
||||||||||||||||||| |||||| ||||||| | ||| |||||||||
as00017 358 TCAACAAGACAGCCATTGGTACCTACCTGGGGGAGAGGGATCCCATCAAC 407
N K T A I G T Y L G E R D P I N
451 ----+----*----+----*----+----*----+----*----+----* 500
L Q V L Q A F V D C H E F A N L N
msh09230 450 TTGCAGGTCCTGCAGGCCTTTGTGGACTGCCATGAGTTTGCCAACCTCAA 499
|||||||||| |||||||| ||||||||||| ||||| |||||||||||
as00017 408 CTGCAGGTCCTCCAGGCCTTCGTGGACTGCCACGAGTTCGCCAACCTCAA 457
L Q V L Q A F V D C H E F A N L N
501 ----+----*----+----*----+----*----+----*----+----* 550
L V Q A L R Q F L W S F R L P G E
msh09230 500 CCTCGTTCAGGCCCTCAGGCAGTTCCTGTGGAGCTTCAGGCTGCCGGGTG 549
|||||| |||||||||||||||||||||||||||||| |||||||||| |
as00017 458 CCTCGTCCAGGCCCTCAGGCAGTTCCTGTGGAGCTTCCGGCTGCCGGGCG 507
L V Q A L R Q F L W S F R L P G E
551 ----+----*----+----*----+----*----+----*----+----* 600
A Q K I D R M M E A F A A R Y C
msh09230 550 AGGCCCAGAAGATTGACCGCATGATGGAGGCCTTCGCTGCTCGCTACTGC 599
||||||||||||| ||||| |||||||||||||| || |||| ||||||
as00017 508 AGGCCCAGAAGATAGACCGGATGATGGAGGCCTTTGCCACTCGATACTGC 557
A Q K I D R M M E A F A T R Y C
601 ----+----*----+----*----+----*----+----*----+----* 650
L C N P G V F R S T D T C Y V L S
msh09230 600 CTCTGTAACCCCGGAGTCTTCCGGTCCACAGACACCTGCTACGTGCTGTC 649
||||| ||||| || ||||||| |||||||||||||||||||||| ||||
as00017 558 CTCTGCAACCCAGGCGTCTTCCAGTCCACAGACACCTGCTACGTGTTGTC 607
L C N P G V F Q S T D T C Y V L S
651 ----+----*----+----*----+----*----+----*----+----* 700
F S V I M L N T G L H N P N V R D
msh09230 650 CTTCTCCGTCATCATGCTCAACACCGGCCTACACAACCCCAACGTGCGGG 699
||||||| ||||||||||||||||| |||| ||||| |||||||| ||||
as00017 608 CTTCTCCATCATCATGCTCAACACCAGCCTCCACAATCCCAACGTCCGGG 657
F S I I M L N T S L H N P N V R D
701 ----+----*----+----*----+----*----+----*----+----* 750
R P P F E R F V T M N R G I N S
msh09230 700 ACAGACCACCCTTCGAGCGCTTTGTGACCATGAATCGCGGCATCAACAGC 749
|||| || || ||||||||||||||| ||||||| |||||||||||||
as00017 658 ACAGGCCGCCTTTCGAGCGCTTTGTGTCCATGAACCGCGGCATCAACAAT 707
R P P F E R F V S M N R G I N N
751 ----+----*----+----*----+----*----+----*----+----* 800
G S D L P E E Q L -
msh09230 750 GGCAGTGACCTGCCCGAGGAGCAGCTACG..................... 778
|| || |||||||||||||| ||||| ||
as00017 708 GGTAGCGACCTGCCCGAGGACCAGCTGCGGGTTACATGGGAGTGCTCCCA 757
G S D L P E D Q L R V T W E C S Q
801 ----+----*----+----*----+----*----+----*----+----* 850
msh09230 779 .................................................. 779
as00017 758 GAGGAGAAGCCGGGAAAGGACATTTCAAAAAGAAGAAGTGGCCAGAACGG 807
R R S R E R T F Q K E E V A R T E
851 ----+----*----+----*----+----*----+----*----+----* 900
E P
msh09230 779 ............................................GAACCT 784
||||||
as00017 808 AGGCGTGTCCTGATTGGGAAAGGAGAGGTGTCCAGTGTGGCCGAGAACCT 857
A C P D W E R R G V Q C G R E P
901 ----+----*----+----*----+----*----+----*----+----* 950
V * Q H Q E *
msh09230 785 GTTTGACAGCATCAAGAGTGAGCCCTTCTCCATCCCTGAGGATGATGGCG 834
|| |||||||||||||||||||| ||||||||||||||||| || |||
as00017 858 CTTCGACAGCATCAAGAGTGAGCCATTCTCCATCCCTGAGGACGACGGCA 907
L R Q H Q E *
951 ----+----*----+----*----+----*----+----*----+----* 1000
msh09230 835 GTGACCTCACTCACACCTTCTTTAACCCCGACCGTGAAGGCTGGCTACTC 884
||||||||||||||||||||| || || ||||| || || ||||| |||
as00017 908 ATGACCTCACTCACACCTTCTTCAATCCAGACCGGGAGGGTTGGCTGCTC 957
1001 ----+----*----+----*----+----*----+----*----+----* 1050
msh09230 885 AAGCTGGG.......................................... 892
||||| ||
as00017 958 AAGCTAGGTGAGAGACCGACAGACACACGTCGTCGCACACACACTCATGC 1007
1051 ----+----*----+----*----+----*----+----*----+----* 1100
msh09230 893 .................................................. 893
as00017 1008 ACGCGCGGGCACACATCGTTGCATGCACACTCCTGGACGCACAGGCCCCC 1057
1101 ----+----*----+----*----+----*----+----*----+----* 1150
msh09230 893 .................................................. 893
as00017 1058 AGCTGACACGAGGCTCACATGCATCCTGGGGGATGGAGTTGGACAGCCCC 1107
1151 ----+----*----+----*----+----*----+----*----+----* 1200
msh09230 893 .................................................. 893
as00017 1108 AGGTCTCCTGGCCCCCAGTGCAGCCGTCTGCCTGCCCCATCCATCCACCT 1157
1201 ----+----*----+----*----+----*----+----*----+----* 1250
msh09230 893 ......................GGGCCGTGTGAAGACATGGAAGCGGCGC 920
| | | | | || || |||| | ||
as00017 1158 GTCCCGAGAAGGAAGGGAGCCAGTGGTGGGGGCTGAGCTGTAAGCCGGGC 1207
1251 ----+----*----+----*----+----*----+----*----+----* 1300
msh09230 921 TGG.....TTCATTCTCACTGACAACTGTCTCTACT.............. 951
| || | ||||||||| || || ||
as00017 1208 GAGAGGCAGACAGACCCACTGACAAATGCTTCAGCTGCGGTTCTGTTTCT 1257
1301 ----+----*----+----*----+----*----+----*----+----* 1350
msh09230 952 .................................................. 952
as00017 1258 CTCTCCCCAGCGGAATGGGGAGGGAAGTCATAGCAGGAAGTACCATTTGT 1307
1351 ----+----*----+----*----+----*----+----*----+----* 1400
msh09230 952 .................................................. 952
as00017 1308 TCAGAACCTACTGAGCTCAGGCAAGGTGCTGGTCCACCCTACAGCCGAAC 1357
1401 ----+----*----+----*----+----*----+----*----+----* 1450
msh09230 952 .................................................. 952
as00017 1358 AGTAAAGTCAGGGATCTGCCTGAGGCCACACAGCCAGCCAGGGGCAGATT 1407
1451 ----+----*----+----*----+----*----+----*----+----* 1500
msh09230 952 .................................................. 952
as00017 1408 TGAGGGCACAGAGGGTTAGGTGTCCCTAAAGGAGGGGAGGAAGGATGACA 1457
1501 ----+----*----+----*----+----*----+----*----+----* 1550
msh09230 952 .................................................. 952
as00017 1458 GGATGTGGCTTAGGGGGAGGCTCCCTTCAAGCTGACTGGGGGCAGGGAGG 1507
1551 ----+----*----+----*----+----*----+----*----+----* 1600
msh09230 952 .................................................. 952
as00017 1508 GCCTGCACCCTGCAGAGAGCAGCTGGGGTGGGAGCTGCAGTAATAGTGGC 1557
1601 ----+----*----+----*----+----*----+----*----+----* 1650
msh09230 952 .................................................. 952
as00017 1558 TGTAGAGTCCAGCAGGGCAACCCCAGTGCCCGGCCGTCTGCCCCTGCCTC 1607
1651 ----+----*----+----*----+----*----+----*----+----* 1700
msh09230 952 .................................................. 952
as00017 1608 CCACACACACTTCCGGAAGCCTCTCCAGCAGGGACAGCCAAGCCGGGGAC 1657
1701 ----+----*----+----*----+----*----+----*----+----* 1750
msh09230 952 .................................................. 952
as00017 1658 AGCGCCTCCAGGGCAGGTGAGGACAGATGCCTCATGTTGAAGCAGGGGTC 1707
1751 ----+----*----+----*----+----*----+----*----+----* 1800
msh09230 952 .................................................. 952
as00017 1708 TCAACCTGGCTCACCTCCAGCAACATTGAGCCTCCAGCACCTCCTGTCTA 1757
1801 ----+----*----+----*----+----*----+----*----+----* 1850
msh09230 952 .................................................. 952
as00017 1758 CCAAGCCCCGTGCCAGTCCTGCCCAGAACCCCCAGGAGCCCATGAGCCCT 1807
1851 ----+----*----+----*----+----*----+----*----+----* 1900
msh09230 952 .................................................. 952
as00017 1808 CTGACTCTCCACACCACACCCCAGTCCATCCTCCTCCAGAGCACTCGGCC 1857
1901 ----+----*----+----*----+----*----+----*----+----* 1950
msh09230 952 .................................................. 952
as00017 1858 GCCTGTCCTGCCCCAGCCACGTGCTGTCCGCCCCCGAGAAGCTCTATGTC 1907
1951 ----+----*----+----*----+----*----+----*----+----* 2000
msh09230 952 ...ACTTTGAGTTCACCACTGACAAAGAACCTCGGGGGATCATTCCCCTG 998
| | | | ||| || | || |||| | | ||| |||||
as00017 1908 ATAAATCTTAACTCAGATGGGAGAGGGAGCCTCAGAGTCACATAGCCCTG 1957
2001 ----+----*----+----*----+----*----+----*----+----* 2050
msh09230 999 G...AAAACCTC...................................... 1007
| ||||| |
as00017 1958 GGCCCAAACCCCAGCTCCTCCACCCAAGTACTGATGGTCAGGTTCTTCAG 2007
2051 ----+----*----+----*----+----*----+----*----+----* 2100
msh09230 1008 .................................................. 1008
as00017 2008 CCTCAGTTTCTGTAGCTGTAAGATGGGGAGAATGATCTCTGGGAGGGTTA 2057
2101 ----+----*----+----*----+----*----+----*----+----* 2150
msh09230 1008 .................................................. 1008
as00017 2058 AATGTGCGGCAAAATGGCCAAGAGTTGGGCTCTGGGACTAGGACATTGGG 2107
2151 ----+----*----+----*----+----*----+----*----+----* 2200
msh09230 1008 .................................................. 1008
as00017 2108 GTTCGAATCCCAGCTCTGCTGCTGAACCGTGGGCAGGCGATTTTACCTCT 2157
2201 ----+----*----+----*----+----*----+----*----+----* 2250
msh09230 1008 .................................................. 1008
as00017 2158 CCATGACTGTTTCCTCATCTGTAAAATGGGGTTAACAATGGTCTCCTCTT 2207
2251 ----+----*----+----*----+----*----+----*----+----* 2300
msh09230 1008 .................................................. 1008
as00017 2208 CATACGTGGTTGTGAGGATTAATAAGTAATATTTTTTGAAACCTCTAGAG 2257
2301 ----+----*----+----*----+----*----+----*----+----* 2350
msh09230 1008 .................................................. 1008
as00017 2258 CAGTGTCTGGCAAATGAAGGACGAAATGCTTAGCATTGTGCCAGGCAGGG 2307
2351 ----+----*----+----*----+----*----+----*----+----* 2400
msh09230 1008 .................................................. 1008
as00017 2308 ACCAAGCTAAGGAATGAAGCAATGGATGGCGGTAGCCAGGAAGAGCAGGA 2357
2401 ----+----*----+----*----+----*----+----*----+----* 2450
msh09230 1008 .........TCCGTGCAGAAGGTAGAGGACC....CCAAGAAGCCGTTCT 1044
||| | | | |||||| | || ||| |
as00017 2358 ACTGGCCATTCCTAGGACCATTCCTAGGACCTGATCACGGAGGCCACCCA 2407
2451 ----+----*----+----*----+----*----+----*----+----* 2500
msh09230 1045 GCCTGGAGCTGTACAACCCCAGCTGCCGGGGCCAGAAGATAAAGGCATGC 1094
| |||| |||||||| |||||||| |||||||| || ||||| |||
as00017 2408 AACGCCAGCTCTACAACCCTAGCTGCCGAGGCCAGAAAATCAAGGCCTGC 2457
2501 ----+----*----+----*----+----*----+----*----+----* 2550
msh09230 1095 AAGACAGACGGGGACGGCAAGGTGGTAGAAGGCAAACATGAATCCTACCG 1144
||||| || || ||||||| |||||| || ||||| || ||||| |||||
as00017 2458 AAGACCGATGGCGACGGCAGGGTGGTGGAGGGCAAGCACGAATCGTACCG 2507
2551 ----+----*----+----*----+----*----+----*----+----* 2600
msh09230 1145 CATCTCAGCTGCCAATGCCGAGGAACGCGACCAGTGGATCGAGGCCATCA 1194
||||||||| ||| |||||||||||| ||||||||||||||| |||||
as00017 2508 CATCTCAGCCACCAGTGCCGAGGAACGTGACCAGTGGATCGAGTCCATCC 2557
2601 ----+----*----+----*----+----*----+----*----+----* 2650
msh09230 1195 GGGCCAGCATCACCCGAGTCCCCTTCTACGACCTGTTGTCTGCTCGGAAA 1244
| |||||||||||||| |||||||||||||||||| | ||| |||||||
as00017 2558 GAGCCAGCATCACCCGTGTCCCCTTCTACGACCTGGTCTCTACTCGGAAG 2607
2651 ----+----*----+----*----+----*----+----*----+----* 2700
msh09230 1245 AAGAAGATTGTCGGCAAGTAGTGAACTTCCAGGAGGCGGTGCTGG..... 1289
|||||||||| | ||||| ||||| |||| ||||| || ||||
as00017 2608 AAGAAGATTGCCAGCAAGCAGTGAGATTCCTGGAGGTGGCACTGGGGGCT 2657
2701 ----+----*----+----*----+----*----+----*----+----* 2750
msh09230 1290 ...CAACCTCGTAGTGCCTATGGTACCCGGAGACACAGAGACACCTCTCA 1336
|| ||| ||| || | | | | ||| |||||| ||
as00017 2658 GGTCACCCTGAGAGTCCCATCGCCTGCAGCACCTGGAGACCCACCTCCCA 2707
2751 ----+----*----+----*----+----*----+----*----+----* 2800
msh09230 1337 CCCGCTGTGCCTGTTCTTGCTCGCAAAC...................... 1364
||| || || | | | || ||
as00017 2708 CCCCAGTGCACTCTTTTGGGCCACAGACATCATTGCTGTTCCCCGTTACC 2757
2801 ----+----*----+----*----+----*----+----*----+----* 2850
msh09230 1365 .....CTGCCCCTCTCTGTCACTGGAACTGGCTGTTGGGGGATGTGGATC 1409
||| | || | | | | | | ||| | ||| |
as00017 2758 TCGAGCTGACTCTAGAGGGGAAGGCAGAGCTCAGGAGGGTGGGTGGGAGC 2807
2851 ----+----*----+----*----+----*----+----*----+----* 2900
msh09230 1410 CTTGGAGGGCCCAGAGCTC....ATGGGGAAGCCT.GCCAGGAAGAACTG 1454
| |||| ||||| | ||| || ||| ||| || | |
as00017 2808 TGCAGTGGGCTCAGAGTCCAGCAATGAGGCCCCCTGGCCTGGGCACCCAG 2857
2901 ----+----*----+----*----+----*----+----*----+----* 2950
msh09230 1455 ATGAAGCTCTGTCCTGGACCACTGTGGCTGAGGGTTAGGATGGGGAGATG 1504
|| || | |||| | || || || || || |||||
as00017 2858 CTGCAGGCC...CCTGCCCTACGTGCACTACAGGAAGGGGTGAGGAGAGC 2904
2951 ----+----*----+----*----+----*----+----*----+----* 3000
msh09230 1505 AGCCAGCCTAGAGCCTG........TATCCCACCCTCTC........... 1535
|||||| | | || | | || | ||||
as00017 2905 AGCCAGAGGAAAACCAGCCCCAGAATGCTGCAACTTCTCTTCTCTCTGGA 2954
3001 ----+----*----+----*----+----*----+----*----+----* 3050
msh09230 1536 .................................................. 1536
as00017 2955 CTTCGGTGTCCTCGGCTCTGAAGGCGCTCTCTGCACTTAGATGCTGTCAG 3004
3051 ----+----*----+----*----+----*----+----*----+----* 3100
msh09230 1536 .........................................CCTCCCAGG 1544
||||| ||
as00017 3005 CCCTCAACGTAGGAGGGGCCGTGGGGTCCCTAAGTGATTCTTCTCCCTGG 3054
3101 ----+----*----+----*----+----*----+----*----+----* 3150
msh09230 1545 AAAGGACCATGGATTCCTTGGGGGCTTCTAGCTCAGTTTTACTTCCCTTA 1594
|||| | | || | || ||| | || | | | |
as00017 3055 CAAGGCTCTTCCTTTTCAGGGATATCTCTGCCAACCCTTCCCCTGTCCTC 3104
3151 ----+----*----+----*----+----*----+----*----+----* 3200
msh09230 1595 CATTGGGATCAGGGCCTCTTTGCCATGGACAAGTATCAGCATACATCGAG 1644
| || || ||||| |||| || | |||||| ||| ||
as00017 3105 GGGTTGGGCTTGGCCCTCTCTGCC..TGAGAGAGCTCAGCACACACACAG 3152
3201 ----+----*----+----*----+----*----+----*----+----* 3250
msh09230 1645 CTTGGAGCCCCGGAAACTTCAGACAAACCCCTCCGCTGAA.......... 1684
|| || || |||| | | || || | | |
as00017 3153 CTCAGACCCACGGACAGGACCCCGGGACAGAACCCCGGGAGCACTGCCCT 3202
3251 ----+----*----+----*----+----*----+----*----+----* 3300
msh09230 1685 .................................................. 1685
as00017 3203 AGGAGCCTGGACCCCACGAGCTCAGTCCCAGCTCTGCCTCTGACTCGCTG 3252
3301 ----+----*----+----*----+----*----+----*----+----* 3350
msh09230 1685 .................CACAGCCCTCCTCTGGGTCTTACAAAA.TGCAG 1716
|| || | |||| | |||| ||||| |||||
as00017 3253 TGTACCCTCTGCCAAGTCATGCCCATTCTCTAGTTCTTGCAAAACTGCAG 3302
3351 ----+----*----+----*----+----*----+----*----+----* 3400
msh09230 1717 AGTTCAGATAGGAAACGTTACGGCCC........................ 1742
||| || ||||||| |||||
as00017 3303 TGTTTGGACTAGAAACGTATTGGCCCCTGCTAGCCCTGTGCTCCAGCTTC 3352
3401 ----+----*----+----*----+----*----+----*----+----* 3450
msh09230 1743 ...........AGCAGGCTTTTTTTGGTCAGCTC............GGCT 1769
|||| | || |||| ||| | | |
as00017 3353 CAGCTGGAGATGGCAGCCGTTATTTGCGGAGCCCAGGCTGACTCCGGATT 3402
3451 ----+----*----+----*----+----*----+----*----+----* 3500
msh09230 1770 CCCAGGGGGAGCTGGGAGATCAGGTGACTGAATGAGACAGACCAAGCTGG 1819
| | | | | |||| || | | | || ||| | ||
as00017 3403 CAACGTTGCTGGGGAGAGAAAAGCAGTATAGACTCCACCTTCCAGGATGT 3452
3501 ----+----*----+----*----+----*----+----*----+----* 3550
msh09230 1820 AAGGTTCTGAGGATACTGCTAGCACGATCCCCAAGGGTGTTGGCCTGAGA 1869
||| | | || | || || |||| | | | ||||
as00017 3453 CCATTTCGGGGAGAGGAGCAGGTGGGACCCTCAAGAAAAT..GACGGAGA 3500
3551 ----+----*----+----*----+----*----+----*----+----* 3600
msh09230 1870 AGATGAGCGGAGGAGACAGACCCTCAAAGCTGTAGCAGTATCTATGGCTG 1919
| || ||||| || ||||| |||| ||
as00017 3501 ACAT..........CCCAGACAGATGGGACTCAAGCAG....GATGGGTG 3536
3601 ----+----*----+----*----+----*----+----*----+----* 3650
msh09230 1920 GCAAGTCTGACCTACAGCTGAGAAAAATGAGAGAAGAGGACACTCCAGGT 1969
| || | ||| |||| ||| | | ||
as00017 3537 CTATATC...CAAGAAGCCAAGAAGGGAGAGTTTCGTGCAC......... 3574
3651 ----+----*----+----*----+----*----+----*----+----* 3700
msh09230 1970 TGTGCCCACCAGGAGGGCTGCTTTGGAGGCCACAGCAAGCCTGAAGGTAG 2019
|||| | ||||||||| || | | | |||| ||| |||
as00017 3575 TGTGGTTAACAGGAGGGCCGCCTGGAGGCAGTGGCTGAGCCAGAAAGTAA 3624
3701 ----+----*----+----*----+----*----+----*----+----* 3750
msh09230 2020 CACAGGACTTAGGCTTG....GACAGACTCTCAGCCATGAC......ACC 2059
||||| || | ||||| || ||| ||| |||||| | |
as00017 3625 CACAGAGCTCATGCTTGGAGAGATAGAGTCTTGGCCATGGCTTTCCTGCA 3674
3751 ----+----*----+----*----+----*----+----*----+----* 3800
msh09230 2060 GGCTACCTGGCCATCAGAGCTAGGGTAGTCACGGAATGCAGGATGGGCCC 2109
| ||| | | ||| | | ||| | | || || | ||| ||
as00017 3675 AGACCACTGACGAGCAGTCCCATGGTGATAAAGGGCAGCCCGGCGGGTCC 3724
3801 ----+----*----+----*----+----*----+----*----+----* 3850
msh09230 2110 CTGTTTCT........GCCTCTTGCCTCTTGCCAGAGCAAGGCCAGCTTT 2151
| | ||| | | | || ||||| | || |||
as00017 3725 CAGCATCTCGAGACCCTCTGCAGAAGTATTATCAGAGTAGAGCTGACTTC 3774
3851 ----+----*----+----*----+----*----+----*----+----* 3900
msh09230 2152 CCATTACACAGCAGGCTGCTGTGTACCCAGGGAGGGCATTCTTGGGAGAT 2201
| | | |||| | ||| ||| ||||||||| | | ||| ||
as00017 3775 CAGTACCCGGGCAGCCAGCTCTGTCTCCAGGGAGGCCTGGCCTGGAGGAG 3824
3901 ----+----*----+----*----+----*----+----*----+----* 3950
msh09230 2202 GTTTCTCACTCCCCCAAGCACTT.GCACCTCCTCTC.CTGCCTAAGCAGC 2249
| || | || ||||| |||| |||| | | | | || |
as00017 3825 GAGTCCACTAACAGGAAACACTTCTCACCCCCTCACACAGGCCCAGGGGA 3874
3951 ----+----*----+----*----+----*----+----*----+----* 4000
msh09230 2250 CCCCCACCAGGGGAAAGTTCCTCAACAAGACAGCAAGAAATGGGGCTCCC 2299
|||| |||| || ||||| || | | || |||||| || ||
as00017 3875 GCCCCTGGAGGG..AAATTCCTTGGCAGGGGAACAGGAAATGTGGTCGCC 3922
4001 ----+----*----+----*----+----*----+----*----+----* 4050
msh09230 2300 TATG.CCCTGTGCCAGCCCAGG.....................CTCCAAG 2327
| || ||| |||||||| | | || ||
as00017 3923 TCTGCCCCACTGCCAGCCTGAGTGGGCAAGGAAGCAGGTGGATCCCCCAG 3972
4051 ----+----*----+----*----+----*----+----*----+----* 4100
msh09230 2328 AATGAGCAGCAAGTGGCCAGGCTGCCCTCTTCCTCTGTAGGAGCTCGTGT 2377
|| || | ||| | || |||| | ||| || || | | |
as00017 3973 AAGGAACCGCAGCTCGCGAGGCACCTCTCCTCGTCCCCACCCACCCCCAC 4022
4101 ----+----*----+----*----+----*----+----*----+----* 4150
msh09230 2378 ATATGTAATC..TACACAGTGGGAAGAGAAGTGCATGGCGGGGAGTGGGG 2425
|| || | | | ||||| | | || || | | || |
as00017 4023 ATTTGCACACCTTCCACAGGGTCAGGATGGAGTAGCTGCCTTGCGAGGTG 4072
4151 ----+----*----+----*----+----*----+----*----+----* 4200
msh09230 2426 GGGAGATGCCTGTCTCGGGAGGGACACACACCTGGGAGCTGGGGTATCAG 2475
| |||| |||||||| ||||| || | || || | |||
as00017 4073 GTGAGACTCCTGTCTCTGGAGGTCTGCAAGCACTGGTAGTGATATTGCAG 4122
4201 ----+----*----+----*----+----*----+----*----+----* 4250
msh09230 2476 CA.....................AGGCAAATGGAGCCCCTGCTGGA.ATT 2503
|| ||| |||| || || ||| ||
as00017 4123 CAGACAAGGTCTGGGTTGGGCGTCTGCAGGAGGAGACCTTGTGGGACATC 4172
4251 ----+----*----+----*----+----*----+----*----+----* 4300
msh09230 2504 TGAGAACTT................TCTGGTGAGCTGAGCCCACACCAGC 2537
|||| || | | |||| || |||| |
as00017 4173 TGAGGACATCCGCAGATTCTTGTCAGCCTGTGAACTAGGCCCTGCCTCTG 4222
4301 ----+----*----+----*----+----*----+----*----+----* 4350
msh09230 2538 TGCCCCCATTTGGGGGTTAAG..GGACCCTGAATTCTTCCTCTG...CCT 2582
| || |||| | | ||| | | || | | | | ||
as00017 4223 TCACCTCATTGGTCCATGAAGGAGCAGCCAGGGGTGGTGGAAGGAGCACT 4272
4351 ----+----*----+----*----+----*----+----*----+----* 4400
msh09230 2583 CCGCCATGTGTGTGTGTGCACAGAGACTGTCTGACT.............. 2618
|| | | || | | || ||| ||||| ||
as00017 4273 GGGCTAGGGGTCAGGGGTCAGAGATTCTGTCCTGCTCCTGGGATGCACTG 4322
4401 ----+----*----+----*----+----*----+----*----+----* 4450
msh09230 2619 .............TTGGTCCCTTTCCCCTCTCTGGTTCTCCACTTCTTCC 2655
| || |||||||||||||| ||| |||| |||
as00017 4323 GCTACTCCCTTAGTCTACTCCCTTCCCCTCTCTGGTCCTCAGCTTCCTCC 4372
4451 ----+----*----+----*----+----*----+----*----+----* 4500
msh09230 2656 CTGA.CACCAAGATGG.............CGGGACATCATTTTCTTTCCT 2691
| | |||||| | || ||| | | || | ||
as00017 4373 ATCATGGAGGAGATGGGATCATGGATTTTCTGGGCATAAGTGGCTGTTCT 4422
4501 ----+----*----+----*----+----*----+----*----+- 4546
msh09230 2692 GTTGTAACACTCAGGAGCAAGAATAAAAGCTCATGACGTCGCTCGT 2737
| | || || || ||||||||| ||| |||
as00017 4423 G.GGAGTCATTCCAAAGAGAGAATAAAA.CTCCTGATCC....... 4459