Comparison of KIAA cDNA sequences between mouse and human (FLJ00251)

<<Original sequence data>>

mouse  mFLJ00251 (msh08255)     length:   3622 bp, CDS:   430 -  3519
human     (sj08895)     length:   4893 bp, CDS:  1157 -  4180

In this page, the longest coding region predicted by GeneMark
was assigned as CDS for each of mouse and human KIAA cDNAs.
They were colored in green.  When the CDS positions were not identical
on the aligned sequences between mouse and human cDNAs, mouse cDNA
sequence was translated based on the human CDS information.
The amino acid sequence produced here may not be identical to the
protein sequence deduced (see Description).


<<Aligned sequence information>>

----------------------------------------------------------
            region      #match  #mismatch  %diff
----------------------------------------------------------
DNA

5'UTR:      6 -  1187     331      348      51.3
  CDS:   1188 -  4243    1142     1337      53.9
3'UTR:   4244 -  4968     211      251      54.3

amino acid

  CDS:   1188 -  4243     171      829      82.9
----------------------------------------------------------


<<Alignment>>

             1 ----+----*----+----*----+----*----+----*----+----* 50
msh08255     1 GCGCCCTTGGCGTGATGGAGCAGCAGCAGCAGCAACTGAGAAACTTGCGA 50
                     |||     |   ||       ||   |  || || ||    |  
sj08895      1 .....TTTGAGAAAAGCCAGGCTTCAGAGTTCCTGCTCAGCAAGCGACAT 45

            51 ----+----*----+----*----+----*----+----*----+----* 100
msh08255    51 GACTTCCTG...TTGGTCTACAATCGGATGACAGAACTGTGTTTCCAGCG 97
               | | |  ||     | |  |  | | |||| |||  | |  ||  ||| |
sj08895     46 GCCATTATGCCCAAGCTGCAGCAGCTGATGGCAG..CAGCATTGGCAGAG 93

           101 ----+----*----+----*----+----*----+----*----+----* 150
msh08255    98 CTGTGTGCCCAGCCTGCACCACCGAGCTCTGGACGCTGAGGAGGAGGCCT 147
               |||   | || || |||     |   ||| || | ||     |    |  
sj08895     94 CTGGAAGGCCTGCTTGCGAAGGCCCTCTCCGGTCCCTTTATGGACCCCAC 143

           151 ----+----*----+----*----+----*----+----*----+----* 200
msh08255   148 GCCTGCACAGCTGTGCTGGGAAACTCATCCATTCTAACCACCGCCTCATG 197
                |  |  |||  | |    ||    || |   |||  | |  || |||  
sj08895    144 ACAAGATCAGAGGAGTACTGAGCACCAGCTCGTCTCCCTAGAGCGTCAGT 193

           201 ----+----*----+----*----+----*----+----*----+----* 250
msh08255   198 GCC............................................... 200
                ||                                               
sj08895    194 TCCAGAACACAGTCAGCGGCCTCAGTGAACTGCACCACGCCTATGCCATC 243

           251 ----+----*----+----*----+----*----+----*----+----* 300
msh08255   201 .................................................. 201
                                                                 
sj08895    244 TTCACTGGTACTGAGGATCCCTGCACCCTCCATTATCACTCTGTGATAGA 293

           301 ----+----*----+----*----+----*----+----*----+----* 350
msh08255   201 .................................................. 201
                                                                 
sj08895    294 CCCTTCAACTGAAAGGATGAGACTCCTGTGCCCTTGCCAATCTGTGGGAC 343

           351 ----+----*----+----*----+----*----+----*----+----* 400
msh08255   201 .................................................. 201
                                                                 
sj08895    344 ACGTCCTATTGTGCAGCAGCAGCGCATATGGCACCTGTACCGAGTCATCT 393

           401 ----+----*----+----*----+----*----+----*----+----* 450
msh08255   201 .............................GCTTACGTGCACCTCATGCCC 221
                                            ||||  |   |  |||  || 
sj08895    394 CCGAAAACATCAGCGAGTGGAAGTGCATGGCTTTTGCCAAGTTCAGCCCA 443

           451 ----+----*----+----*----+----*----+----*----+----* 500
msh08255   222 GCCCTGGTCCAG..........................CGCCGCATCGCG 245
               ||  ||| ||||                           || |||  |  
sj08895    444 GCTATGGCCCAGGAGAAGACAGAGGGCTGGCTGACAGAGGCAGCACGGAT 493

           501 ----+----*----+----*----+----*----+----*----+----* 550
msh08255   246 GACTACGAGGCTGCCTCGGCCGCGCCAGGTATTCCTGCAGAACA.GACCA 294
               ||  || |  |||   | ||   |||  ||  | | |||   || |  ||
sj08895    494 GAGCACAACCCTGGAGCTGCACAGCCCCGTGCTGCAGCACTGCATGCGCA 543

           551 ----+----*----+----*----+----*----+----*----+----* 600
msh08255   295 GAGACTCGCCATCAGGCAGCTAGCCGTCCCTGGCCCCT............ 332
                      |   |   ||||||| | | |||||  | ||            
sj08895    544 TCCTGGGGGAGTTTCGCAGCTACCTGCCCCTGCTCACTAAGCTGGGCAGC 593

           601 ----+----*----+----*----+----*----+----*----+----* 650
msh08255   333 ....................................GGAGAGAAGGTGGT 346
                                                    | |     | | |
sj08895    594 CTCCACCCACAGAGCCTCAACTGCCAGTGTCTCCTGCGTGCCCTTGGGCT 643

           651 ----+----*----+----*----+----*----+----*----+----* 700
msh08255   347 TGCCAGCCTCCACTCTGAAGTTTTCCTCATG................... 377
                | ||| |||||  ||  ||   |||| | |                   
sj08895    644 GGGCAGTCTCCAAACTATAGAACTCCTAACGCTGGGCCAGCTGCTTACTT 693

           701 ----+----*----+----*----+----*----+----*----+----* 750
msh08255   378 .................................................. 378
                                                                 
sj08895    694 ATCCACTGCTGGAGTTTGCAGATCGAATCAACCAGGTCTGGCAGAATGAA 743

           751 ----+----*----+----*----+----*----+----*----+----* 800
msh08255   378 ..TGAACACAGTTTTTCCAAAGATTTTGCAAGCGTGTATCGGTCTCTGTG 425
                 |||||  | |  | || ||||   |  | |   ||  | |      ||
sj08895    744 AATGAACGAATTCATGCCCAAGAGACTATACGGCGGTTGCAGCGGTACTG 793

           801 ----+----*----+----*----+----*----+----*----+----* 850
msh08255   426 TTAAGTG........................................ACT 435
                 ||| |                                        || 
sj08895    794 GGAAGCGCGCCAGCTGCGCCTGCTCAACTTCATCCTGCATGTACCCTACG 843

           851 ----+----*----+----*----+----*----+----*----+----* 900
msh08255   436 GGAACTGAGTCTAAGTTCATTCACGACAGGGAGCGCTCCG.......CAA 478
                |  |  || || ||  |  ||      |   | ||||||       |||
sj08895    844 AGCCCCCAGCCTCAGAGCGCTCCAAGAGGCAGGTGCTCCGCAGCCCCCAA 893

           901 ----+----*----+----*----+----*----+----*----+----* 950
msh08255   479 TGAAACCTCAT..TCACAGACCAGTCCCCCTTCCCTTCCCATGCCTTCTA 526
               ||  |  |  |   || |||      | |||||     |   |  | |  
sj08895    894 TGGGAGGTAGTGGACAAAGATAGTGGCACCTTCATCCTCTCAGATTACAG 943

           951 ----+----*----+----*----+----*----+----*----+----* 1000
msh08255   527 CATCCTGCAGG.......CCAGGTCAGAC.CCAGAAG....CCAAAAGCC 564
               || ||||||||       |||||  || |  |||  |    |||| | | 
sj08895    944 CAACCTGCAGGATTCCATCCAGGAAAGTCTTCAGGTGTTGTCCAAGATCT 993

          1001 ----+----*----+----*----+----*----+----*----+----* 1050
msh08255   565 TGGAATTGGCA....................................... 575
               |||   | | |                                       
sj08895    994 TGGCCATCGAAAAGTCAGGAGATTTAAACAAAATAGCTTTGGAGTGGGTG 1043

          1051 ----+----*----+----*----+----*----+----*----+----* 1100
msh08255   576 ..............TTTGGACCCCGAGCTGTGGGCAAGATCTGTTCGACA 611
                               |||   ||  ||||  ||   |      |   ||
sj08895   1044 GCCATCATGCATGGCCTGGGTGCCCTGCTGGAGGTGTGGCTGACTTTCCA 1093

          1101 ----+----*----+----*----+----*----+----*----+----* 1150
msh08255   612 GCAATTGAATACCTGCCTCCGCTTTATTCTGGAAGAGAAGAAAAACCCAT 661
               |||   |   |  |  ||        ||||| | |||| ||| | ||  |
sj08895   1094 GCAGAAGTGGATTTTTCTGAATAAAGTTCTGCATGAGATGAAGATCCAGT 1143

          1151 ----+----*----+----*----+----*----+----*----+----* 1200
                                                    P  S  V  W  V
msh08255   662 GGTTTTAT...........................ACCCTTCAGTCTGGG 684
                   | ||                            |||||   ||   |
sj08895   1144 TTCCTAATGCTGACCTGTGCCCAGTGCCGAGAGGAGCCCTTACTTCCAAG 1193
                            P  V  P  S  A  E  R  S  P  Y  F  Q  G

          1201 ----+----*----+----*----+----*----+----*----+----* 1250
                 R  W  M  *  L  Q  R  T  R  T  L  L  G  L    K  *
msh08255   685 TTCGTTGGATGTAGCTGCAGCGGACAAGAACACTCTTGGGACTGTCAAAT 734
                 |    | || | |  | || |  |  |  |    |||  |||   |  
sj08895   1194 GCCAGCAGCTGCAACAACTGCTGCAAGCAGGATCGGTGGAGCTG..GAGG 1241
                 Q  Q  L  Q  Q  L  L  Q  A  G  S  V  E  L    E  G

          1251 ----+----*----+----*----+----*----+----*----+----* 1300
                 N  R  R  I  S  R  Q  W  L  N  Q  S  S  G  H  C  
msh08255   735 GAAACAGGAGGATCTCAAGGCAGTGGTTGAATCAGAGCAGCGGACACTGC 784
               | | ||  | ||       |     | |  ||  |    | |  |||| |
sj08895   1242 GCATCATCATGAGTCTGGAGAGCGTGCTCTATGGGGTGTGTGCTCACTTC 1291
                 I  I  M  S  L  E  S  V  L  Y  G  V  C  A  H  F  

          1301 ----+----*----+----*----+----*----+----*----+----* 1350
               *  S  C  C  C  L  S  F  S     L  C  S  Q  L   D  A
msh08255   785 TGAAGCTGCTGCTGTCTGAGCTTCAGT...CTCTGTTCTCAGCTGTGATG 831
                   ||  || ||  || ||   ||||   ||     | | |||| | ||
sj08895   1292 CCCCGCCTCTTCTTCCTTAGTGACAGTGAGCTGGTAGCCCTGCTG.GCTG 1340
               P  R  L  F  F  L  S  D  S  E  L  V  A  L  L   A  A

          1351 ----+----*----+----*----+----*----+----*----+----* 1400
                 G  W  Q  -  C  E  A  W  R  -                    
msh08255   832 CAGGATGGCAGT..TGTGAAGCTTGGCGCT.................... 859
               |  ||  | | |  || |||||   ||  |                    
sj08895   1341 CTCGACTGGAATCATGCGAAGCCCAGCTATGGGTACGACGCTGCTTTCCT 1390
                 R  L  E  S  C  E  A  Q  L  W  V  R  R  C  F  P  

          1401 ----+----*----+----*----+----*----+----*----+----* 1450
                  L  H  A  V  L  G  L  L  P  P  Y  R  E  -       
msh08255   860 .ATCTGCATGCAGTACTGGGCCTGTTGCCTCCATACCGTGAGA....... 901
                || ||||||| ||      |  ||     |||    ||||||       
sj08895   1391 CATGTGCATGCTGTGAGCTTCAGGTCTTGCCCAACTGGTGAGAAAAACAC 1440
               H  V  H  A  V  S  F  R  S  C  P  T  G  E  K  N  T 

          1451 ----+----*----+----*----+----*----+----*----+----* 1500
msh08255   902 .................................................. 902
                                                                 
sj08895   1441 AGATGACTGGGAGTCAAGCCCAAACACACAGACTCAGGTGGAGGCACTTG 1490
                D  D  W  E  S  S  P  N  T  Q  T  Q  V  E  A  L  A

          1501 ----+----*----+----*----+----*----+----*----+----* 1550
msh08255   902 .................................................. 902
                                                                 
sj08895   1491 CAGTGCTAGGGGCAGGTGGGGAGGAGGTGAAGCTGCAGGGTCCCCTTCCT 1540
                 V  L  G  A  G  G  E  E  V  K  L  Q  G  P  L  P  

          1551 ----+----*----+----*----+----*----+----*----+----* 1600
                  L  A  G  Q  L  E  L  L  P  F  L  E  Q  L  Y  C 
msh08255   902 .TGCTAGCTGGTCAACTCGAGTTGCTGCCCTTCCTGGAGCAGCTGTACTG 950
                |||   | | ||  |   ||| |||| |||  |||||| ||       |
sj08895   1541 CTGCATCCAGATCTCCCTAAGTGGCTGGCCTCTCTGGAGAAGTGTCTGCG 1590
               L  H  P  D  L  P  K  W  L  A  S  L  E  K  C  L  R 

          1601 ----+----*----+----*----+----*----+----*----+----* 1650
                W  A        P  K  V  Q  A  R  L  -  A  G  P  A  R
msh08255   951 CTGGGCA......CCCAAGGTCCAAGCCCGGCTAG.AGCTGGACCTGCTA 993
               || ||||      | || | | || | | |  | |  ||| | | |||| 
sj08895   1591 CTTGGCACTGGTGCACATGCTGCAGGGCTGTGTGGCTGCTCGCCTTGCTC 1640
                L  A  L  V  H  M  L  Q  G  C  V  A  A  R  L  A  R

          1651 ----+----*----+----*----+----*----+----*----+----* 1700
                 C  H  R  Q  G  L  S  P  R  Q  F  F  V  T  *  F  
msh08255   994 GATGCCATAGACAAGGCCTTTCCCCCAGACAGTTCTTTGTTACATAGTTC 1043
               || |||     | |||     ||| ||  ||  |         | |    
sj08895   1641 GAGGCCCATCTCTAGGTGAGGCCCTCAAGCAACTGCCCAAGCAAAACAAG 1690
                 G  P  S  L  G  E  A  L  K  Q  L  P  K  Q  N  K  

          1701 ----+----*----+----*----+----*----+----*----+----* 1750
               F  P  C  *  L  -  V  Y  G  *  R  G  F  I  E  G  L 
msh08255  1044 TTCCCATGTTGACTGT.GGTCTATGGATGAAGAGGTTTCATCGAGGGCCT 1092
               ||         |||||  ||| |    || |  |  ||  || ||| | |
sj08895   1691 TTGTACCTGCAACTGTATGTCCAGCACTGGATCGACTTAGTCCAGGCCTT 1740
               L  Y  L  Q  L  Y  V  Q  H  W  I  D  L  V  Q  A  F 

          1751 ----+----*----+----*----+----*----+----*----+----* 1800
                H  A  Q  H  A  L  L     E  G  P  V  G  P  A  T  K
msh08255  1093 CCATGCTCAGCATGCCCTTTTG..TGAAGGCCCAGTGGGACCGGCAACAA 1140
               ||     |||  ||  ||  ||   || |     ||  | | |||    |
sj08895   1741 CCCATGGCAGTGTGTGCTGGTGGCAGAGGAGGTGGTATGGCGGGCCGAGA 1790
                P  W  Q  C  V  L  V  A  E  E  V  V  W  R  A  E  M

          1801 ----+----*----+----*----+----*----+----*----+----* 1850
                 K  G  I  G  H  V  A  P  T  I  D  -     C  L  S  
msh08255  1141 AAAAAGGAATTGGCCACGTGGCTCCGACCATTGACA....CTGCCTGAGC 1186
                  | |    |   |  | |      ||| | | ||    || | ||   
sj08895   1791 TGGAGGAGGCTCTGCTTGAGTGGGGTACCCTGGCCATGGTCTCCATGCAT 1840
                 E  E  A  L  L  E  W  G  T  L  A  M  V  S  M  H  

          1851 ----+----*----+----*----+----*----+----*----+----* 1900
               Y  S  T  V  W  A  L  L  V  L  R  W  P  *  K  R  P 
msh08255  1187 TACAGCACTGTCTGGGCATTGTTGGTGCTGAGGTGGCCCTAGAAGAGACC 1236
                   |||   |   || | || ||    | | | || || ||| |    |
sj08895   1841 ATGCGCAAGCTTGAGGTACTGGTGAATTTTATGCGGGCCCAGAGGGCTTC 1890
               M  R  K  L  E  V  L  V  N  F  M  R  A  Q  R  A  S 

          1901 ----+----*----+----*----+----*----+----*----+----* 1950
                H  G  W  T  A  L  V  F  C  P  W  H  W  L  Q  T  S
msh08255  1237 CCATGGCTGGACAGCCTTAGTCTTTTGCCCTTGGCACTGGCTACAGACAT 1286
               ||| ||  ||    || |    | |  ||    |  | | || |  |   
sj08895   1891 CCAAGGTGGGCAGTCCCTGCCTTCTGTCCGCCAGACCAGCCTTCTCAGTG 1940
                Q  G  G  Q  S  L  P  S  V  R  Q  T  S  L  L  S  A

          1951 ----+----*----+----*----+----*----+----*----+----* 2000
                 L  Y  S  M     A  V  I  R     R  Q  K  A  N  L  
msh08255  1287 CCCTGTACAGTATGAAAGCAGTGATACTGAGCAGGCAGAAGGCGAACCTG 1336
               |||||      |||   |||||||  |    | || | |  ||  | |||
sj08895   1941 CCCTGCTGGTCATG...GCAGTGACTC...ACCGGGATATAGCACAGCTG 1984
                 L  L  V  M     A  V  T  H     R  D  I  A  Q  L  

          2001 ----+----*----+----*----+----*----+----*----+----* 2050
               L  G  E  N        Q  V  A  S  E  A  P  E  E  K  A 
msh08255  1337 CTGGGAGAAAAC....TTCAGGTTGCCTCTGAAGCTCCTGAGGAGAAGGC 1382
               |||| | |  ||    |    | |  | | ||   ||    ||       
sj08895   1985 CTGGAACAGCACCAGGTCAGTGATCTCACAGACTTTCACTGGGTCCGCCA 2034
               L  E  Q  H  Q  V  S  D  L  T  D  F  H  W  V  R  Q 

          2051 ----+----*----+----*----+----*----+----*----+----* 2100
                L  K                    K  K  S  S  R  T  P  V  L
msh08255  1383 CCTCAAG..................AAGAAAAGCTCTAGGACTCCCGTCT 1414
                ||||||                   | | || | | |  |  ||| |  
sj08895   2035 ACTCAAGTATCACTTGGGTTCACCTCACATAATCCCCAAAAGCCCCCTAC 2084
                L  K  Y  H  L  G  S  P  H  I  I  P  K  S  P  L  Q

          2101 ----+----*----+----*----+----*----+----*----+----* 2150
                 R  S  Q  V  K  -  P  S  G  E  R  L  D  P  E  E  
msh08255  1415 TGAGAAGTCAGGTGAAATC.CCTTCTGGAGAGAGACTGGACCCAGAAGAA 1463
                |||   | ||   |   |  |||||| |      |||   ||||  | |
sj08895   2085 AGAGTCTTAAGACTATTGCATCTTCTGAACCCTCTCTGTCACCAGCGGCA 2134
                 S  L  K  T  I  A  S  S  E  P  S  L  S  P  A  A  

          2151 ----+----*----+----*----+----*----+----*----+----* 2200
                                    I  H  F  L  Y  L  N  V     F 
msh08255  1464 ....................GATCCACTTCCTTTATCTCAATGTG.GTTT 1492
                                    |    |||||| ||     | | |  | |
sj08895   2135 TGCTGGATAGATGTGCTAGGCAGGTCCTTCCTGTACAATTACGAGTATCT 2184
               C  W  I  D  V  L  G  R  S  F  L  Y  N  Y  E  Y  L 

          2201 ----+----*----+----*----+----*----+----*----+----* 2250
                *  S  A  L  *  P  L     K  L  V  A  V  P  P  D  K
msh08255  1493 CTGATCGGCACTTTAACCCTTA..CAAGCTGGTGGCAGTGCCACCAGACA 1540
                 || |   |||    ||  ||  ||  ||  || | |  |  |||| | 
sj08895   2185 GGGACCTAGACTAGGGCCTCTACCCAGCCTACTGCCTGAACGGCCAGCCC 2234
                G  P  R  L  G  P  L  P  S  L  L  P  E  R  P  A  L

          2251 ----+----*----+----*----+----*----+----*----+----* 2300
                 -  E  S  *  A  L  H  L  L   P  F  G  I  L  H  I 
msh08255  1541 AGGT.GAATCCTGAGCACTACATCTTCTCTCCCTTTGGGATCCTGCATAT 1589
                |||   ||  |  || ||| |     |   ||| ||||| | | |    
sj08895   2235 TGGTACTATTATTGGCCCTAGAGGAGGT.GGCCTGTGGGACCGTACTGGG 2283
                 V  L  L  L  A  L  E  E  V   A  C  G  T  V  L  G 

          2301 ----+----*----+----*----+----*----+----*----+----* 2350
                H  P  V  E  G  K     A  M  T  L  G  -  L  A  P  R
msh08255  1590 ACATCCTGTGGAGGGCAGTGAGGCAATGACACTGGGCA.CTTGGCACCGA 1638
                | |  ||  | |||||   ||  |   | | ||  || | |||||| | 
sj08895   2284 TCCTAATGGTGTGGGCA...AGAGAGCTATAGTGAACAGCCTGGCACAGG 2330
                P  N  G  V  G  K     R  A  I  V  N  S  L  A  Q  A

          2351 ----+----*----+----*----+----*----+----*----+----* 2400
                 L  C  S  L     R  E  L  Q  R  I  P  F  F  K  N  
msh08255  1639 GACTGTGCTCTCTG..GCGTGAGCTCCAGCGCATCCCATTCTTTAAGAAT 1686
                 ||| ||   | |  |     ||| |   ||   ||     |  ||  |
sj08895   2331 CCCTGGGCCGCCAGCTGGTGATGCTACCCTGCTCACCTCAGATAGAGGCT 2380
                 L  G  R  Q  L  V  M  L  P  C  S  P  Q  I  E  A  

          2401 ----+----*----+----*----+----*----+----*----+----* 2450
               C  L  L  R  K  A  L  T  C  W  K  K  N  -          
msh08255  1687 TGCCTCTTGCGAAAGGCGTTGACCTGTTGGAAGAAAAATG.........T 1727
                    | || | ||     |||   ||     | |   ||         |
sj08895   2381 CAATGCCTGAGCAACTATCTGAATGGTGCCCTGCAGGGTGGTGCCTGGCT 2430
               Q  C  L  S  N  Y  L  N  G  A  L  Q  G  G  A  W  L 

          2451 ----+----*----+----*----+----*----+----*----+----* 2500
                R  L  C  G  L  H  R  I  Q  T  F  L  K  T  H  L  L
msh08255  1728 GAGGTTGTGTGGGCTGCATCGGATCCAGACTTTCTTGAAGACTCATCTGC 1777
               |  ||||       | |||| | | |   ||  ||||    ||   ||| 
sj08895   2431 GCTGTTGGAGAAAGTTCATCAGCTGCCCCCTGGCTTGCTCTCTGCCCTGG 2480
                L  L  E  K  V  H  Q  L  P  P  G  L  L  S  A  L  G

          2501 ----+----*----+----*----+----*----+----*----+----* 2550
                 S     Y  S  S  F  W  S  W  D  A  P  Y  *  Q  A  
msh08255  1778 TCTCG.GCTATTCCTCATTTTGGAGCTGGGATGCTCCATATTAACAGGCT 1826
                |  | ||        | |      || | |||| |||   || ||||  
sj08895   2481 GCCAGCGCCTGGGTGAACTGCACCACTTGTATGCCCCACTGTACCAGGAG 2530
                 Q  R  L  G  E  L  H  H  L  Y  A  P  L  Y  Q  E  

          2551 ----+----*----+----*----+----*----+----*----+----* 2600
               S  S  R  V  S  F  C  V  L  A  T  Q    S  Q        
msh08255  1827 TCTTCAAGAGTTTCGTTCTGTGTCCTGGCTACCCAAGGAGCCAG...... 1870
                ||||  ||    |   |    |     | |||||  |  ||||      
sj08895   2531 GCTTCCCGAAACACAAGCACCATAGACCCCACCCA..GCCCCAGCTCCTT 2578
               A  S  R  N  T  S  T  I  D  P  T  Q    P  Q  L  L  

          2601 ----+----*----+----*----+----*----+----*----+----* 2650
                     R  S  Y  E  L  V  D  L  Q  K  A  I  A  K  E 
msh08255  1871 ....ATAGGTCCTATGAGCTGGTGGACCTGCAGAAGGCAATAGCCAAAGA 1916
                    ||| | || |||        || ||     |    | | | | | 
sj08895   2579 GGCAGTAGCTTCTTTGAAAAACATCACGTGTCTGTGCGCCTTGGCTATGG 2628
               G  S  S  F  F  E  K  H  H  V  S  V  R  L  G  Y  G 

          2651 ----+----*----+----*----+----*----+----*----+----* 2700
                N  H  K  A  L    S  A  L  S  L  S  E  S  L  Y  I 
msh08255  1917 GAACCACAAGGCTCTTCGAGTGCTCTGTCACTTTCTGAATCTCTGTACAT 1966
                   | |  ||  ||  | |||| |||     | |||   ||    || |
sj08895   2629 CTGTCTCCTGGTACT..GCGTGCCCTGAGCTCTGCTGTGCCTGCCAACCT 2676
                C  L  L  V  L    R  A  L  S  S  A  V  P  A  N  L 

          2701 ----+----*----+----*----+----*----+----*----+----* 2750
                H  S  S  T  G  P     A  G  E  S  A  K  L  E  Q  D
msh08255  1967 CCATTCTTCAACTGGGCCT...GCAGGAGAGAGTGCAAAACTGGAACAGG 2013
                ||           |||||   |||   |      |  | |||   || |
sj08895   2677 GCACCTGCTGCTGCGGCCTGTGGCATTGGCATTGCCTGATCTGCGGCAAG 2726
                H  L  L  L  R  P  V  A  L  A  L  P  D  L  R  Q  V

          2751 ----+----*----+----*----+----*----+----*----+----* 2800
                 Q  E  R  P  R  L  H  I  P  S  E  D  A  V  Q  -  
msh08255  2014 ATCAGGAAAGGCCAAGGCTCCATATACCTTCAGAGGACGCTGTGCAGA.. 2061
                    ||   | |   |||   |  |        ||| ||  | ||||  
sj08895   2727 TGGCAGAGCTGACTCTGCTGGGTGCAGGGATGAGGGATGCCTTCCAGATG 2776
                 A  E  L  T  L  L  G  A  G  M  R  D  A  F  Q  M  

          2801 ----+----*----+----*----+----*----+----*----+----* 2850
msh08255  2062 .................................................. 2062
                                                                 
sj08895   2777 GCTACCCGCCTATCCAAATTCTTCTCTCTAGAGCGTGAGCTGGTGTCTGG 2826
               A  T  R  L  S  K  F  F  S  L  E  R  E  L  V  S  G 

          2851 ----+----*----+----*----+----*----+----*----+----* 2900
                                  H  L  E  K  K  L  K  Q  A  E  T
msh08255  2062 ...................CATCTGGAGAAGAAGCTGAAGCAGGCCGAAA 2092
                                  |  |||   ||| || |   | | | |  ||
sj08895   2827 GCCCCTGCCCTGCCGCCTGCCACTGCTCAAGCAGATACTGGAAGACACAA 2876
                P  L  P  C  R  L  P  L  L  K  Q  I  L  E  D  T  I

          2901 ----+----*----+----*----+----*----+----*----+----* 2950
                 W  L  L  K  L  G  K                 D  Y  M  I  
msh08255  2093 CATGGTTGTTGAAGTTGGGAAAGTTTGCCCGCCTGATTGACTACATGATT 2142
                | ||    | ||  ||   |||               ||  |   ||  
sj08895   2877 TACGGACACTAAATGTGACCAAG...............GAGGAACCGAAG 2911
                 R  T  L  N  V  T  K                 E  E  P  K  

          2951 ----+----*----+----*----+----*----+----*----+----* 3000
               C  Q  N  L  V  S  I  L  E  D  E  I  S  S  F  I  A 
msh08255  2143 TGTCAGAACCTTGTATCCATCTTAGAAGATGAAATATCTTCCTTTATAGC 2192
               || ||||| | |     | |    |    |||     || || |  |   
sj08895   2912 TGCCAGAAGCCTCGCAGCCTAGCTGCCATTGAGGAGGCTGCCCTACTGCA 2961
               C  Q  K  P  R  S  L  A  A  I  E  E  A  A  L  L  H 

          3001 ----+----*----+----*----+----*----+----*----+----* 3050
                N  T  L  Q  A  P  R  Q  T     F  L  L  S  Q  L  V
msh08255  2193 TAATACTCTGCAAGCCCCAAGGCAAAACCCCTTTCTCTTATCACAGCTGG 2242
               |      ||||   | |||  |   |    | |||||      |  |   
sj08895   2962 TGCCCTACTGCGCTCACCACTGTTTA...GCATTCTCAATGGGCTCCACC 3008
                A  L  L  R  S  P  L  F  S     I  L  N  G  L  H  L

          3051 ----+----*----+----*----+----*----+----*----+----* 3100
                 F  D  D  N  G  Q  L  S  P  M  P  R  V  E  S  I  
msh08255  2243 TCTTTGATGACAATGGTCAGTTGTCACCTATGCCCCGTGTTGAATCTATA 2292
               |     |   |   || | |||||   |  |   || |   |       |
sj08895   3009 TGCACAACCTCCGAGGGCTGTTGTGTGCGCTTTTCCCTAGCGCCAGCCAA 3058
                 H  N  L  R  G  L  L  C  A  L  F  P  S  A  S  Q  

          3101 ----+----*----+----*----+----*----+----*----+----* 3150
               I  Q  G  L  I  K  S  L  Q  S  I  K  T  S  A  L  K 
msh08255  2293 ATCCAGGGTCTCATTAAGAGCCTGCAGTCTATCAAGACCTCTGCCTTAAA 2342
                | | ||       || ||      ||   || ||| | |  |   |  |
sj08895   3059 GTGCTGGCAGAACCTATGACTTACAAGCTGATGAAGCCATTGGTGGTGGA 3108
               V  L  A  E  P  M  T  Y  K  L  M  K  P  L  V  V  E 

          3151 ----+----*----+----*----+----*----+----*----+----* 3200
                V  L  Q  S  T  D  L  R  T  S  R  D  L  L  Y  S  E
msh08255  2343 GGTACTGCAGTCTACAGATCTGAGGACCTCCAGAGATCTCCTGTATTCTG 2392
               || ||||||      || ||||    ||  |   ||  |  ||   ||  
sj08895   3109 GGAACTGCAACAGGTAGGTCTGGATCCCAGCCCTGACATTTTGGGGTCCT 3158
                E  L  Q  Q  V  G  L  D  P  S  P  D  I  L  G  S  L

          3201 ----+----*----+----*----+----*----+----*----+----* 3250
                 D  N  K  D  Q  D  S  -     A  E  F  L  M  P  K  
msh08255  2393 AAGACAACAAAGACCAGGACTCAA...ATGCAGAATTCCTGATGCCCAAG 2439
                 ||  |      ||||| |   |     ||   |  | |  ||| |  |
sj08895   3159 TGGAACAGTTGAGCCAGGCCCTGAGCCGGGCCTCAGGCATTCTGCTCCTG 3208
                 E  Q  L  S  Q  A  L  S  R  A  S  G  I  L  L  L  

          3251 ----+----*----+----*----+----*----+----*----+----* 3300
                     S  W  K  G  Q  R  C  C  S  P  L  L  W  P  * 
msh08255  2440 ....TTTCATGGAAAGGCCAGCGATGCTGTTCGCCTCTTCTGTGGCCCTA 2485
                    | |  | |  ||| ||      |||| ||      | |       
sj08895   3209 GGCCCTGCGGGCAGCGGCAAGACCACTTGTTGGCACAGCTTATTTAAGAT 3258
               G  P  A  G  S  G  K  T  T  C  W  H  S  L  F  K  I 

          3301 ----+----*----+----*----+----*----+----*----+----* 3350
                R  R  I  R  V  A  L  E  V  S  C  N  Y  C       W 
msh08255  2486 ACGTAGGATACGTGTGGCCTTGGAAGTCTCATGCAATTACTGATGTCCTG 2535
                |  |     |  |  ||| |||| | | | |  |   |  |     |||
sj08895   3259 CCAGAATCGGCTGGCAGCCATGGAGGACACCTCAACCCAAGG.....CTG 3303
                Q  N  R  L  A  A  M  E  D  T  S  T  Q  G       C 

          3351 ----+----*----+----*----+----*----+----*----+----* 3400
                K  S  V  G  T  S  Y  G     V  S  F  C  T  P  I  M
msh08255  2536 GAAGTCCGTGGGCACAAGCTACGGG...GTCAGTTTCTGCACCCCAATTA 2582
                 || | ||||  |  | | ||  |     ||||  |  || |||     
sj08895   3304 CCAGCCTGTGGAAATTACCCACCTGTACCCCAGTGGCCTCAGCCCCCAGG 3353
                Q  P  V  E  I  T  H  L  Y  P  S  G  L  S  P  Q  E

          3401 ----+----*----+----*----+----*----+----*----+----* 3450
                 I  M        Q  E  D  L  D  K  N  A  G  I     Q  
msh08255  2583 TGATCATG....TGCAGGAGGACTTGGACAAGAATGCTGGAATC...CAA 2625
                | || ||     ||  |||| ||    |  | ||  ||| |||   |  
sj08895   3354 AGTTCCTGGGATGGCTAGAGGGCTCCTGCTGGCATCATGGCATCTTTCCC 3403
                 F  L  G  W  L  E  G  S  C  W  H  H  G  I  F  P  

          3451 ----+----*----+----*----+----*----+----*----+----* 3500
               Q  A  L  A  V   N  S  H  -        L  E  D  M  R  Q
msh08255  2626 CAGGCACTTGCTGTACAACAGTCACT.......CTTGGAGGACATGAGGC 2668
                ||| ||||  || |   | |||| |       | |||   | | |||||
sj08895   3404 AAGGTACTTCGTGCA.GCCGGTCAGTGTAACAACATGGGCCAAAAGAGGC 3452
               K  V  L  R  A   A  G  Q  C  N  N  M  G  Q  K  R  Q

          3501 ----+----*----+----*----+----*----+----*----+----* 3550
                 E  V  Q  E  F  C  N  K  H  K                    
msh08255  2669 AGGAGGTGCAGGAATTCTGCAATAAACACAAG.................. 2700
               ||   | | |   | || | |   | |||  |                  
sj08895   3453 AGACAGAGGAATCAATCGGGATCCAGCACTGGATAATATGTGATGGAGCC 3502
                 T  E  E  S  I  G  I  Q  H  W  I  I  C  D  G  A  

          3551 ----+----*----+----*----+----*----+----*----+----* 3600
                           W  V  E  G  I  Y  E  F  L  K  -       
msh08255  2701 ............TGGGTAGAAGGCATCTATGAGTTCCTGAAAG....... 2731
                           ||| | ||   ||||  |    ||||||  |       
sj08895   3503 TCCAATGGTGCTTGGCTGGACTCCATCACTTGCCTCCTGAGTGAGCTTCC 3552
               S  N  G  A  W  L  D  S  I  T  C  L  L  S  E  L  P 

          3601 ----+----*----+----*----+----*----+----*----+----* 3650
msh08255  2732 .................................................. 2732
                                                                 
sj08895   3553 CCAGCTTAGTCTCCCCAGTGGACAGCAGATAGCACGACCCCCAGGCACCT 3602
                Q  L  S  L  P  S  G  Q  Q  I  A  R  P  P  G  T  F

          3651 ----+----*----+----*----+----*----+----*----+----* 3700
                       L  E  L  S  E  A  R  -                    
msh08255  2732 .......CCTGGAGCTCTCAGAAGCTAGAG.................... 2754
                        ||||| |  | ||  | | ||                    
sj08895   3603 TTCTCTTGATGGAGGTGGCTGACACAACAGGCATATCCCCCACAGTGGTA 3652
                 L  L  M  E  V  A  D  T  T  G  I  S  P  T  V  V  

          3701 ----+----*----+----*----+----*----+----*----+----* 3750
                                                   T  *  E  A  L 
msh08255  2755 ...................................GACCTGAGAGGCTCT 2769
                                                  ||| ||  ||  | |
sj08895   3653 GGCTGTTGTGCCCTAGTCTGGTGTGGTGGAGAGCAGACTTGGCAGTGTAT 3702
               G  C  C  A  L  V  W  C  G  G  E  Q  T  W  Q  C  I 

          3751 ----+----*----+----*----+----*----+----*----+----* 3800
                L  L  T  I  M           N  L  V  I  Q  L  K  K  W
msh08255  2770 CCTATTAACAATTATG.......TAAATCTGGTAATCCAACTGAAAAAGT 2812
                ||     |  | |||       |   |   |    ||  ||| |  |  
sj08895   3703 ACTTAGTGCCCTGATGGCATCCCTTCCTTATGAGTACCGCCTGCAGCACC 3752
                L  S  A  L  M  A  S  L  P  Y  E  Y  R  L  Q  H  R

          3801 ----+----*----+----*----+----*----+----*----+----* 3850
                 Q  E  R  V  S  N  M  S  V  E  L  L  T  K  G  K  
msh08255  2813 GGCAGGAACGTGTCTCCAATATGTCTGTCGAATTACTGACAAAAGGCAAG 2862
               ||   |    ||    |||       |  ||  | |||      |  |  
sj08895   3753 GGACAGTCGCTGAGCTCAACCACATGGCTGAGGTTCTGGTGCCTGCAACA 3802
                 T  V  A  E  L  N  H  M  A  E  V  L  V  P  A  T  

          3851 ----+----*----+----*----+----*----+----*----+----* 3900
               L  L  F  L  S  G  H  D  V       R  V  G  I  Q  V  
msh08255  2863 TTGCTGTTCCTGAGTGGCCATGATGTTCAAGAAGAGTTGGGATCCAAGTT 2912
               ||||  ||||| |   |||| | |||      ||   |  | | || || 
sj08895   3803 TTGCGATTCCTCACCTGCCAAGGTGT.....CAGCTCTCTGCTGCAGGTA 3847
               L  R  F  L  T  C  Q  G  V       S  S  L  L  Q  V  

          3901 ----+----*----+----*----+----*----+----*----+----* 3950
               K  *  H  E  E  D     S  *  T  G  A  K             
msh08255  2913 AAATAACATGAGGAAGAACATTCTTGAACAGGCGCAAAA........... 2951
                |    ||  |||  |    || |  |   |  ||| ||           
sj08895   3848 CACGGGCAGCAGGCTG...TTTGTGCAGGTGTGGCAGAAGTTACCAGCAT 3894
               H  G  Q  Q  A  V     C  A  G  V  A  E  V  T  S  M 

          3951 ----+----*----+----*----+----*----+----*----+----* 4000
                                                       *  M  L  E
msh08255  2952 ........................................TGAATGCTGG 2961
                                                         || |  ||
sj08895   3895 GGCACGCATCTTGCATAGTCTGCTTGACCTCCACCTTCGCCTAAAGGAGG 3944
                A  R  I  L  H  S  L  L  D  L  H  L  R  L  K  E  E

          4001 ----+----*----+----*----+----*----+----*----+----* 4050
                 P  *  S  A  A  D  D  R  T  D  R  V  L  A  V     
msh08255  2962 AGCCGTAATCAGCAGCTGATGACAGAACTGACAGAGTTCTTGCGGGTCTT 3011
               ||  |    | |   | || |||   |   | || | || || ||     
sj08895   3945 AGAAGGCCCCTGGCCCAGAGGACCTCAGCTATAGTGATCCTGTGG....C 3990
                 K  A  P  G  P  E  D  L  S  Y  S  D  P  V  A     

          4051 ----+----*----+----*----+----*----+----*----+----* 4100
                Q  T  I  S  S  D  I  H  A  I  A  Q  C  S  Q  K  L
msh08255  3012 CCAAACCATCAGCTCAGACATCCATGCCATTGCACAGTGCTCCCAGAAAC 3061
               ||||| | |||| ||    |       | ||  | |  | ||||||    
sj08895   3991 CCAAAGCTTCAGGTCTTCAAAAAGCAGCTTTCTAAACCGGTCCCAGGTTG 4040
                Q  S  F  R  S  S  K  S  S  F  L  N  R  S  Q  V  D

          4101 ----+----*----+----*----+----*----+----*----+----* 4150
                 S  D     N  E  Q  Y  C  Q  L  E  E  R  V  E  Y  
msh08255  3062 TAAGTGAAGCCAATGAGCAATACTGCCAGCTAGAGGAGCGAGTGGAATAT 3111
                 |||||   | ||| || | |          ||  |     |||     
sj08895   4041 ACAGTGA...CGATGTGCCAGATAAGTGCAGGGAACACTTGCTGGCTGTC 4087
                 S  D     D  V  P  D  K  C  R  E  H  L  L  A  V  

          4151 ----+----*----+----*----+----*----+----*----+----* 4200
               V  R  S  L  H  D  L  I  R  N  H  C  A  L  -       
msh08255  3112 GTCCGATCACTCCATGACCTCATCCGAAACCACTGTGCCCTCTT...... 3155
                 | | |  ||   || | | ||| |   |    | |||| | |      
sj08895   4088 AGCAGTTTTCTTTTTGCCTTGATCTGGGGCTTTGGAGCCCACCTTCCCTC 4137
               S  S  F  L  F  A  L  I  W  G  F  G  A  H  L  P  S 

          4201 ----+----*----+----*----+----*----+----*----+----* 4250
msh08255  3156 .................................................. 3156
                                                                 
sj08895   4138 CAGGTACCTACCAGGATGGGGGATGGGAGATGCAGAGGGCTGAGATGGAC 4187
                R  Y  L  P  G  W  G  M  G  D  A  E  G  *         

          4251 ----+----*----+----*----+----*----+----*----+----* 4300
msh08255  3156 ....CATTGCTGAGAATGAGACTCTAGACATTGCGCTTCTAGATTTATGG 3201
                   |  ||     ||  |  | |  |||||  |  ||   |  |  |||
sj08895   4188 TGGCCCATGGAAGTAAAAACCCACATGACATCACTGTTAGGGTATGGTGG 4237

          4301 ----+----*----+----*----+----*----+----*----+----* 4350
msh08255  3202 GAGGCATTTCAATTTGAAAGAAGCCAGGTTTCAGAGTTCCTGCTCAGCAA 3251
                  |  |     | | | | | |  ||  ||   | |  |||       |
sj08895   4238 AGTGTGTGAGTGTGTCATAAATGGAAGTGTTGTAACTGTCTG.......A 4280

          4351 ----+----*----+----*----+----*----+----*----+----* 4400
msh08255  3252 GCAACATGCCATTGTGCCCAGGCTGCAGCAGCTGATGGCAGCAGCATTGG 3301
                     ||||  |||| |||      ||||| |  ||||  || | ||| 
sj08895   4281 CGCTTTTGCCTGTGTGTCCA..TCTGAGCAGGTTCTGGC.CCATCTTTGA 4327

          4401 ----+----*----+----*----+----*----+----*----+----* 4450
msh08255  3302 CAGAGCTGGAAGGCCTGCTAGCGAAGGCACTGTCTGGTCCCTTTATGGAT 3351
                |       ||||  | |||      ||     |   | || | |   | 
sj08895   4328 TACCTTCATAAGGGATTCTATTAGTCGCCTCTCCAACTACCCTGAGCCAC 4377

          4451 ----+----*----+----*----+----*----+----*----+----* 4500
msh08255  3352 CCTTCACAAGAACAGAGGAGCACTGAGCAACAGCTTGGTGCCTTGGAGCA 3401
               |   | ||      | |    |   |     |           |||| ||
sj08895   4378 CACCCTCAGCCTTGGTGTTTGATCTACATGTAAGCCCTGAAGATGGAACA 4427

          4501 ----+----*----+----*----+----*----+----*----+----* 4550
msh08255  3402 TCAGTTCCTGAATATACTCAATAACTTCAATGCCCTATGCAATG..CTTA 3449
                  || ||      |   ||||| ||     |||  ||  || |  ||| 
sj08895   4428 CTGGTCCCCTTCACTGGCCAATACCTGAGCAGCCACATCAAAGGAACTTT 4477

          4551 ----+----*----+----*----+----*----+----*----+----* 4600
msh08255  3450 CTGCACCTTCACTGGTACTGAGCATCATCATCTCTGTTTTTACCCTGGGA 3499
                 |||||||      | ||   ||   | | |     || ||   || | 
sj08895   4478 GGGCACCTTTCACCCTTCTATCCAGACTGAACGGCTCTTGTA...TGTGG 4524

          4601 ----+----*----+----*----+----*----+----*----+----* 4650
msh08255  3500 GGACCCTTCATCTAAGATAAGGGCTGGGACTTGAGGTG............ 3537
                |  ||| | |||   |   || | |  | |   | ||            
sj08895   4525 TGGACCTGCTTCTGTCAGGGGGACAGCCAGTGTTGCTGGCTGGAGAGGCA 4574

          4651 ----+----*----+----*----+----*----+----*----+----* 4700
msh08255  3538 .................................................. 3538
                                                                 
sj08895   4575 GCAACAGGGAAGTCAGCCTTTGTGGAGGTGCTGGTAGAGCCACATCACCC 4624

          4701 ----+----*----+----*----+----*----+----*----+----* 4750
msh08255  3538 ...........................................TTTTGTC 3544
                                                           |  |||
sj08895   4625 TTACATATACAGCCCCATCCACCCTGCCTTCAGTTCCTCCCACCTCCGTC 4674

          4751 ----+----*----+----*----+----*----+----*----+----* 4800
msh08255  3545 TTCTGTCAACCTCAGCAAGCCTTGG......................... 3569
               | |||   | |  || || ||  ||                         
sj08895   4675 TCCTGCTGAGCAGAGGAATCCAGGGCCAAACACAAGCCAGCCCACAGCCT 4724

          4801 ----+----*----+----*----+----*----+----*----+----* 4850
msh08255  3570 ...........GAATCATATGCCTTCCCTGGTC................. 3591
                          | ||  ||  || |||||  ||                 
sj08895   4725 GGGCATCACCAGGATTCTAAACCCTCCCTCCTCTTCTTGCTGGAGGACCT 4774

          4851 ----+----*----+----*----+----*----+----*----+----* 4900
msh08255  3592 .................................................. 3592
                                                                 
sj08895   4775 GCACCTAGCCACTTCTGGTGAGGAGCTGCGAAGAGGGAAGGAAGGAGCTA 4824

          4901 ----+----*----+----*----+----*----+----*----+----* 4950
msh08255  3592 .....................................TCTTTTACAAACA 3604
                                                    || || ||   ||
sj08895   4825 CTGTCATCTCTTGAGACTATAAAATCCCTAGCAATATTCATTGACTCTCA 4874

          4951 ----+----*----+---- 4969
msh08255  3605 AATATGAGAGGACATATT. 3622
               |||||  |     | ||  
sj08895   4875 AATATATGTCTGTAGATCT 4893