FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00087.ptfa, 1054 aa
 vs ./tmplib.26680 library

1767963 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.7532+/-0.00572; mu= 3.7950+/- 0.380
 mean_var=164.8714+/-39.429, 0's: 0 Z-trim: 5  B-trim: 0 in 0/36
 Lambda= 0.0999

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1743  ( 811 res)   mbg02378                   ( 811) 1109  172 2.5e-43


>>mKIAA1743  ( 811 res)   mbg02378                        (811 aa)
 initn: 1156 init1: 1109 opt: 1109  Z-score: 870.3  bits: 172.3 E(): 2.5e-43
Smith-Waterman score: 1111;  47.354% identity (48.907% ungapped) in 378 aa overlap (454-819:1-378)

           430       440       450       460       470       480   
mFLJ00 LELDEVSIPRAPAAGLERWFPVLGAPAGAVLRARIRVRCLRVLPSERYKELAEFLTFHYA
                                     .: . : . . .:: : :::.:: .: :: 
mKIAA1                               IRIKARYQTVSILPMEMYKEFAEHITNHYL
                                             10        20        30

           490       500       510       520       530       540   
mFLJ00 RLCGALEPALSAQAKEELAAAMVRVLRATGRAQALVTDLGTAELARCGGREALLFRENTL
        ::.:::: :::..:::.:.:.:..:..::... ..:::  .:. :::  : :.::::::
mKIAA1 GLCAALEPILSAKTKEEMASALVHILQSTGKVKDFLTDLMMSEVDRCGDNEHLIFRENTL
               40        50        60        70        80        90

           550       560       570       580       590       600   
mFLJ00 ATKAIDEYMKLVAQEYLQDTLGQVVRCLCASTEDCEVDPSKCPTPELPKHQARLRDSCEE
       :::::.::.:::.:.::::.::. .. :  : :.:::::::: . .::.::. :.  :: 
mKIAA1 ATKAIEEYLKLVGQKYLQDALGEFIKALYESDENCEVDPSKCSSADLPEHQGNLKMCCEL
              100       110       120       130       140       150

           610       620       630       640       650       660   
mFLJ00 VFENIIHSYNCFPAELGSVFSSWREACKARGSEALGPRLVCASLFLRLLCPAILAPSLFG
       .: .::.::  :: ::  ::.:::. :..::   .. ::. ::::::.:::::..::::.
mKIAA1 AFCKIINSYCVFPRELKEVFASWRQECSSRGRPDISERLISASLFLRFLCPAIMSPSLFN
              160       170       180       190       200       210

           670       680       690       700       710       720   
mFLJ00 LAPEHPAPGPARTLTLIAKVIQNLANCAPFGEKEAYMAFMNSFLEDHGPAMQHFLDQVAT
       :  :.:    :::::::::: ::::: : :: :: ::.:::.::: .   ::.:: ....
mKIAA1 LLQEYPDDRTARTLTLIAKVTQNLANFAKFGSKEEYMSFMNQFLEHEWTNMQRFLLEISN
              220       230       240       250       260       270

           730       740       750       760       770       780   
mFLJ00 VDADTTPSGYQGSGDLALQLAVLHVQLCTIFAELDQKTQDSLEPLPTILRAIEEGRPVPV
        .. .. .:..:  ::. .:. ::  :    ..:::.. ..: ::: ::: .. .  .: 
mKIAA1 PETLSNTAGFEGYIDLGRELSSLHSLLWEAVSQLDQSVVSKLGPLPRILRDVHTALSTPG
              280       290       300       310       320       330

                  790            800       810       820       830 
mFLJ00 S--VP-----MRLP-----RISTQVQSSFFSGEKPGFLAPRDLPKHTPLISKSQSLRSFQ
       :  .:        :      .:. .:.  . ..  :..    ::. ::            
mKIAA1 SGQLPGTNDLASTPGSGSSSVSAGLQKMVIENDLSGLIDFTRLPSPTPENKDLFFVTRSS
              340       350       360       370       380       390

             840       850       860       870       880       890 
mFLJ00 GAGSWASRRPDEERPQRRPRPVLRTQSVPARRPTHRRPSAGSKPRPKGSLRMGPAPCGRA
                                                                   
mKIAA1 GVQPSPARSSSYSEANEPDLQMANGSKSLSMVDLQDARTLDGEAGSPVGPDALPADGQVP
              400       410       420       430       440       450




1054 residues in 1 query   sequences
1767963 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:06:47 2006 done: Mon Mar 27 10:06:48 2006
 Scan time:  1.060 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]