FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4023.ptfa, 888 aa vs ./tmplib.26680 library 1768129 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.2973+/-0.00601; mu= 6.6047+/- 0.399 mean_var=172.0525+/-41.975, 0's: 0 Z-trim: 3 B-trim: 104 in 1/35 Lambda= 0.0978 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0188 ( 684 res) mtj00866 ( 684) 1771 262 1.5e-70 mKIAA0249 ( 115 res) mph01493 ( 115) 489 81 1.2e-16 >>mKIAA0188 ( 684 res) mtj00866 (684 aa) initn: 1919 init1: 1196 opt: 1771 Z-score: 1358.8 bits: 262.2 E(): 1.5e-70 Smith-Waterman score: 1905; 46.444% identity (49.922% ungapped) in 689 aa overlap (215-880:9-672) 190 200 210 220 230 240 mKIAA4 PRRREEDAVDSSSEELEAGAESELTLLEKPTPESPSAQEAEEPSSQPKDIHPYSDGECTP :: : :. :: : . . .: .: mKIAA0 SSLVDCQRTP--PHLAEGVLSSSCPLQSCHFHASE-SP 10 20 30 250 260 270 280 290 300 mKIAA4 QANLSSGDLMSPKSDSELELRSLEPSPLRAESHMQWVWGRLPKVAKAERPEFSLILESMA ... : .::::::: .: . . . .: :.::.::..::. :. .: mKIAA0 SGSRPS----TPKSDSELVSKSADRLTPKNNLEMLWLWGELPQAAKSSSPH------KMK 40 50 60 70 80 310 320 330 340 350 360 mKIAA4 EAICALPEEPSPSSSPSEAGVDTLSPPVLHPGVRADTFHPAVEAHCEETAVDSPLAAPES :. :: .: . : .. ..: . .::: . . . . : : mKIAA0 ES--------SPLGSRKTP--DKMNFQAIH-SESSDTFSDQSPTMARGLLIHQSKAQTEM 90 100 110 120 130 370 380 390 400 410 420 mKIAA4 KETKTQN--SRGAGHPPATKSWSWTTPESHTPSGHPQV-SRGKGSLKRNQHLGPSDIYLD . .. .. : ::. ::. . .: .: .. .. : .. . ::..::: . .::: mKIAA0 QFVNEEDLESLGAAAPPSPVAEELKAPYPNTAQSSSKTDSPSRKKDKRSRHLGADGVYLD 140 150 160 170 180 190 430 440 450 460 470 mKIAA4 DLPSLDSENVALYFPKS-EYGMGARRWSEPSNQKLLESPNP------EHIAECTLDSV-- :: ..: : .::::::. . : .. :. . .. .::. . .: : ::. mKIAA0 DLTDMDPEVAALYFPKNGDPGGLPKQASDNGARSANQSPQSVGGSGIDSGVESTSDSLRD 200 210 220 230 240 250 480 490 500 510 520 530 mKIAA4 -DKIELSLCGGLADNRDISLEKFTQHMVSYEDLTKNPGLLDDPNLVVKINEKHYNWAVAA .: .::::::.:.:.:. . : .. :::.... ::...::::::::...:.:::..:: mKIAA0 LPSIAISLCGGLSDHREITKDAFLEQAVSYQQFADNPAIIDDPNLVVKVGNKYYNWTTAA 260 270 280 290 300 310 540 550 560 570 580 590 mKIAA4 PMILSLQAFQKNLPESTVDKLEKEKMPRKGGRWWFSWRRRDFPAEEHSSQREKAATRKQQ :..:..::::: ::..::... ..:::.:::::::::: :. .:.:. :. : : . mKIAA0 PLLLAMQAFQKPLPKATVESIMRDKMPKKGGRWWFSWRGRNATIKEESKP-EQCLTGKGH 320 330 340 350 360 370 600 610 620 630 640 mKIAA4 --GEKTEVLSSDDDVP-DSPVILE----VPPLPSSTPGYVP--TYKKSLRLSSDQIRCLN ::. :. . .: : . : :: . . .:::.:::.:.:.. :. mKIAA0 NTGEQPAQLGLATRIKHESSSSDEEHAAAKPSGSSHLSLLSNVSYKKTLRLTSEQLKSLK 380 390 400 410 420 430 650 660 670 680 690 700 mKIAA4 LNEGANDVVFSVTTQYQGTCRCKATIYLWNWDDKVVISDIDGTITKSDALGHILPQLGKD :..: :::::::::::::::::..:::::::::::.:::::::::.::.:::::: :::: mKIAA0 LKNGPNDVVFSVTTQYQGTCRCEGTIYLWNWDDKVIISDIDGTITRSDTLGHILPTLGKD 440 450 460 470 480 490 710 720 730 740 750 760 mKIAA4 WTHQGITSLYHKIHLNGYKFLYCSARAIGMADLTKGYLQWVSEHGCGLPKGPILLSPSSL ::::::..::::. :::::::::::::::::.:.:::.::.:.: ::.::.::::::: mKIAA0 WTHQGIAKLYHKVSQNGYKFLYCSARAIGMADMTRGYLHWVNERGTVLPQGPLLLSPSSL 500 510 520 530 540 550 770 780 790 800 810 820 mKIAA4 FSALHREVIEKKPEVFKVACLSDIQQLFLPQRQPFHAAFGNRPNDVFAYRQVGLPESRIF :::::::::::::: ::: ::.::..::.:. .::.::::::: ::..:.:::: .::: mKIAA0 FSALHREVIEKKPEKFKVQCLTDIKNLFFPNTEPFYAAFGNRPADVYSYKQVGLSLNRIF 560 570 580 590 600 610 830 840 850 860 870 880 mKIAA4 TVNPRGELIQELIKSHKSTYQRLGEVVELLFPPVVRGPSTDLA-SPEYSNLSYWRKPLPY ::::.:::.:: :.. :.: :: :::. .:: . :. : :. : .::...::.::: mKIAA0 TVNPKGELVQEHAKTNISSYVRLCEVVDHVFPLLKRSHSCDFPCSDTFSNFTFWREPLPP 620 630 640 650 660 670 mKIAA4 VDFEALA mKIAA0 FENQDMHSASA 680 >>mKIAA0249 ( 115 res) mph01493 (115 aa) initn: 489 init1: 489 opt: 489 Z-score: 391.4 bits: 80.6 E(): 1.2e-16 Smith-Waterman score: 489; 58.261% identity (58.261% ungapped) in 115 aa overlap (774-888:1-115) 750 760 770 780 790 800 mKIAA4 SEHGCGLPKGPILLSPSSLFSALHREVIEKKPEVFKVACLSDIQQLFLPQRQPFHAAFGN ::: ::. ::.::..:: :.::::.::::: mKIAA0 KPEKFKIECLNDIKNLFAPSRQPFYAAFGN 10 20 30 810 820 830 840 850 860 mKIAA4 RPNDVFAYRQVGLPESRIFTVNPRGELIQELIKSHKSTYQRLGEVVELLFPPVVRGPSTD :::::.:: :::.:. :::::::.:::::: :..::.:.::.:.:: .:: . . .. mKIAA0 RPNDVYAYTQVGVPDCRIFTVNPKGELIQERTKGNKSSYHRLSELVEHVFPLLSKEQNSA 40 50 60 70 80 90 870 880 mKIAA4 LASPEYSNLSYWRKPLPYVDFEALA . ::.:.. ::: :.: .:.. :: mKIAA0 FPCPEFSSFCYWRDPIPDLDLDDLA 100 110 888 residues in 1 query sequences 1768129 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:59:29 2006 done: Mon Mar 27 10:59:31 2006 Scan time: 0.990 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]