Comparison of KIAA cDNA sequences between mouse and human (KIAA1868)
<<Original sequence data>>
mouse mKIAA1868 (msh06100) length: 616 bp, CDS: 2 - 523
human KIAA1868 (fj22550) length: 3748 bp, CDS: 1 - 1392
In this page, the longest coding region predicted by GeneMark
was assigned as CDS for each of mouse and human KIAA cDNAs.
They were colored in green. When the CDS positions were not identical
on the aligned sequences between mouse and human cDNAs, mouse cDNA
sequence was translated based on the human CDS information.
The amino acid sequence produced here may not be identical to the
protein sequence deduced (see Description).
<<Aligned sequence information>>
----------------------------------------------------------
region #match #mismatch %diff
----------------------------------------------------------
DNA
5'UTR: 411 - 411 0 1 100.0
CDS: 412 - 1031 457 66 12.6
3'UTR: 1032 - 3723 54 41 43.2
amino acid
CDS: 412 - 1031 163 44 21.3
----------------------------------------------------------
<<Alignment>>
1 ----+----*----+----*----+----*----+----*----+----* 50
msh06100 1 .................................................. 1
fj22550 1 GTTCTGCAAGCCTACATCAGCAATGACCTCTTGGACTGTTATAGCCACAA 50
V L Q A Y I S N D L L D C Y S H N
51 ----+----*----+----*----+----*----+----*----+----* 100
msh06100 1 .................................................. 1
fj22550 51 CCAGAGGAGTGTGCTTCAGTTGCTGCACTCCACGAGCGACGTGGTGCGGC 100
Q R S V L Q L L H S T S D V V R Q
101 ----+----*----+----*----+----*----+----*----+----* 150
msh06100 1 .................................................. 1
fj22550 101 AGTACATGGCCAGGCTCATCAATGCTTTTGCGTCACTGGCAGAAGGTCGC 150
Y M A R L I N A F A S L A E G R
151 ----+----*----+----*----+----*----+----*----+----* 200
msh06100 1 .................................................. 1
fj22550 151 CTCTACCTTGCCCAGAACACAAAGGTGCTGCAGATGCTGGAGGGAAGGCT 200
L Y L A Q N T K V L Q M L E G R L
201 ----+----*----+----*----+----*----+----*----+----* 250
msh06100 1 .................................................. 1
fj22550 201 GAAGGAGGAGGACAAGGATATCATCACCAGGGAGAATGTTCTTGGGGCCC 250
K E E D K D I I T R E N V L G A L
251 ----+----*----+----*----+----*----+----*----+----* 300
msh06100 1 .................................................. 1
fj22550 251 TGCAGAAGTTCAGTCTCAGGCGCCCGCTGCAGACAGCGATGATTCAAGAC 300
Q K F S L R R P L Q T A M I Q D
301 ----+----*----+----*----+----*----+----*----+----* 350
msh06100 1 .................................................. 1
fj22550 301 GGCCTCATCTTCTGGCTGGTTGATGTTCTGAAGGACCCTGACTGCCTGTC 350
G L I F W L V D V L K D P D C L S
351 ----+----*----+----*----+----*----+----*----+----* 400
msh06100 1 .................................................. 1
fj22550 351 TGACTACACGCTGGAGTACTCGGTGGCTTTGCTCATGAACCTCTGCCTCC 400
D Y T L E Y S V A L L M N L C L R
401 ----+----*----+----*----+----*----+----*----+----* 450
K N M C A K V A G L M L K
msh06100 1 ..........AAAGAACATGTGTGCTAAGGTGGCAGGGCTCATGCTGAAA 40
|||||||||||||| ||||||||||| ||| |||| |||
fj22550 401 GCAGCACAGGGAAGAACATGTGTGCCAAGGTGGCAGGCCTCGTGCTCAAA 450
S T G K N M C A K V A G L V L K
451 ----+----*----+----*----+----*----+----*----+----* 500
V L S D L L G H E N H E I Q P Y V
msh06100 41 GTTCTTTCGGATCTCCTTGGACACGAAAACCATGAGATCCAGCCGTATGT 90
|| ||||||||||| ||||| || |||||||||||||| |||||||||||
fj22550 451 GTCCTTTCGGATCTTCTTGGCCATGAAAACCATGAGATACAGCCGTATGT 500
V L S D L L G H E N H E I Q P Y V
501 ----+----*----+----*----+----*----+----*----+----* 550
N G A L Y S I L S I P S I R E E A
msh06100 91 GAATGGAGCCCTGTACAGCATCCTCTCCATCCCGTCCATTCGAGAGGAGG 140
||||||||| |||||||||||||| || | || |||||||| ||||| |
fj22550 501 GAATGGAGCTCTGTACAGCATCCTTTCTGTTCCATCCATTCGTGAGGAAG 550
N G A L Y S I L S V P S I R E E A
551 ----+----*----+----*----+----*----+----*----+----* 600
R A M G M E D I L R C F I K E G
msh06100 141 CCAGAGCCATGGGAATGGAGGATATCCTGCGATGCTTCATCAAAGAAGGC 190
| ||||| ||||||||||| || ||||| || ||||||||||||||||||
fj22550 551 CAAGAGCAATGGGAATGGAAGACATCCTACGCTGCTTCATCAAAGAAGGC 600
R A M G M E D I L R C F I K E G
601 ----+----*----+----*----+----*----+----*----+----* 650
N A E M I R Q I E F I I K Q L N S
msh06100 191 AACGCTGAAATGATCCGCCAGATAGAGTTTATCATCAAGCAGCTGAATTC 240
|| ||||||||||||||||||||||| || |||||||||||||| |||||
fj22550 601 AATGCTGAAATGATCCGCCAGATAGAATTCATCATCAAGCAGCTAAATTC 650
N A E M I R Q I E F I I K Q L N S
651 ----+----*----+----*----+----*----+----*----+----* 700
E D L L D G V L E S D D D E D E D
msh06100 241 TGAAGATTTACTCGATGGTGTTCTTGAATCCGACGATGATGAAGATGAAG 290
||||| ||| ||||||||||||||||| || ||||||||||||||||
fj22550 651 CGAAGAGCTACCAGATGGTGTTCTTGAATCTGATGATGATGAAGATGAAG 700
E E L P D G V L E S D D D E D E D
701 ----+----*----+----*----+----*----+----*----+----* 750
D E E D H D I M E A D L D K D E
msh06100 291 ATGATGAAGAGGATCATGACATCATGGAAGCTGACCTGGACAAAGATGAA 340
||||||||||||| ||||||||||||||||| || ||||||||||| |||
fj22550 701 ATGATGAAGAGGACCATGACATCATGGAAGCCGATCTGGACAAAGACGAA 750
D E E D H D I M E A D L D K D E
751 ----+----*----+----*----+----*----+----*----+----* 800
L I Q P Q L G E L S G E K L L T T
msh06100 341 CTGATCCAGCCCCAGCTGGGAGAACTCTCAGGCGAGAAGCTTCTAACCAC 390
||||||||||||||||| |||||||||||||| ||||||||||| |||||
fj22550 751 CTGATCCAGCCCCAGCTCGGAGAACTCTCAGGAGAGAAGCTTCTGACCAC 800
L I Q P Q L G E L S G E K L L T T
801 ----+----*----+----*----+----*----+----*----+----* 850
E Y L G I M T N T G K A R R K G P
msh06100 391 AGAGTACTTGGGAATCATGACCAACACTGGGAAGGCACGGAGGAAAGGGC 440
|||||| |||| |||||||||||||| |||||| || || |||| ||||
fj22550 801 GGAGTACCTGGGGATCATGACCAACACGGGGAAGACAAGGCGGAAGGGGC 850
E Y L G I M T N T G K T R R K G L
851 ----+----*----+----*----+----*----+----*----+----* 900
A S V Q W S G D E P L R R P V T
msh06100 441 CGGCCAGTGTGCAGTGGAGTGGGGATGAGCCCCTTCGTCGGCCAGTCACC 490
||| | |||||||||||| |||||||||||||| | |||| ||||||
fj22550 851 TGGCTAATGTGCAGTGGAGCGGGGATGAGCCCCTGCAAAGGCCCGTCACC 900
A N V Q W S G D E P L Q R P V T
901 ----+----*----+----*----+----*----+----*----+----* 950
P G G H R T G C P -
msh06100 491 CCTGGTGGCCACAGGACAGGGTGCCCAGT..................... 519
|| || |||||||| | |||| ||||||
fj22550 901 CCCGGCGGCCACAGAAACGGGTACCCAGTGGTGGAAGACCAACACACACC 950
P G G H R N G Y P V V E D Q H T P
951 ----+----*----+----*----+----*----+----*----+----* 1000
msh06100 520 .................................................. 520
fj22550 951 TCCCCAGACAGCCCAGCACGCCAGAAACGGCCACCCGCAGGCCCTGCCAG 1000
P Q T A Q H A R N G H P Q A L P A
1001 ----+----*----+----*----+----*----+----*----+----* 1050
K F G I Q E A
msh06100 520 ...........................GTAAGTTCGGGATACAGGAGGCG 542
| ||| | | | | |||| |
fj22550 1001 CCGCTCACGAGGCTGTCTACAGGGAGGGCAAGCCCAGCACCCCGGAGTCC 1050
A H E A V Y R E G K P S T P E S
1051 ----+----*----+----*----+----*----+----*----+----* 1100
G V Y F S -
msh06100 543 GGAGTCTATTTTTCTT.................................. 558
| |||| | ||| |
fj22550 1051 TGCGTCTCCTCTTCATCAGCCATCATCGCCAAGCCAGGAGAGTGGCTCCC 1100
C V S S S S A I I A K P G E W L P
1101 ----+----*----+----*----+----*----+----*----+----* 1150
msh06100 559 .................................................. 559
fj22550 1101 AAGAGGACGCCAGGAAGAGCCTCGCCCAGCCCCCACGGGGACCCCCCGCC 1150
R G R Q E E P R P A P T G T P R Q
1151 ----+----*----+----*----+----*----+----*----+----* 1200
msh06100 559 .................................................. 559
fj22550 1151 AGCCAAGGGAGGCGCCCCAGGACCCAGGCAATGGAGTGACCACCAGGGAA 1200
P R E A P Q D P G N G V T T R E
1201 ----+----*----+----*----+----*----+----*----+----* 1250
msh06100 559 .................................................. 559
fj22550 1201 TGTGCATCAGCCTTCACCTGCAAGCCCCGGGCCCCCTGCACTCCAGAGAT 1250
C A S A F T C K P R A P C T P E M
1251 ----+----*----+----*----+----*----+----*----+----* 1300
msh06100 559 .................................................. 559
fj22550 1251 GCTGGACTGGAACCCACCCAAGGCAAAGGCGTCAGTTCTGGCCCCTCTGT 1300
L D W N P P K A K A S V L A P L F
1301 ----+----*----+----*----+----*----+----*----+----* 1350
msh06100 559 .................................................. 559
fj22550 1301 TCTCTTCGTGTGGCCCCCAGCAGGCCAGCCGCCCCGGCTCCACAGCGTCC 1350
S S C G P Q Q A S R P G S T A S
1351 ----+----*----+----*----+----*----+----*----+----* 1400
msh06100 559 .................................................. 559
fj22550 1351 TCCACAAGGGGCCTGCCGAGCAGCCAGTCTCACAGGAAGTAAGGATGTCC 1400
S T R G L P S S Q S H R K *
1401 ----+----*----+----*----+----*----+----*----+----* 1450
msh06100 559 .................................................. 559
fj22550 1401 CCGGGTGTCCCCATCACGTTGCCGGAGGACCAGCCAGCTTCCCGCTCTCA 1450
1451 ----+----*----+----*----+----*----+----*----+----* 1500
msh06100 559 .................................................. 559
fj22550 1451 GCTGGCAGCAGCTGCCGGTGATGGATGTGAAGGGACAGTTGTCCACAAGA 1500
1501 ----+----*----+----*----+----*----+----*----+----* 1550
msh06100 559 .................................................. 559
fj22550 1501 CTCTGGGAGCTGAGGGGAGGCCGGCTCTCCAGGCAGCACCAGAGCAAGGC 1550
1551 ----+----*----+----*----+----*----+----*----+----* 1600
msh06100 559 .................................................. 559
fj22550 1551 CATCGCAGCCCCGCCAGCCGGGTCACTTTCTCCCAGGGCAGAGCCACCAA 1600
1601 ----+----*----+----*----+----*----+----*----+----* 1650
msh06100 559 .................................................. 559
fj22550 1601 GGAGGGCTGGGGAGAGCCTGGCATTGCCCTCCTGGAGAGGGGAATTTCCT 1650
1651 ----+----*----+----*----+----*----+----*----+----* 1700
msh06100 559 .................................................. 559
fj22550 1651 GCTCACCCTTCACACACAGAGGAGAGGGGTGGCTTTTGCCCGCAGGAGAT 1700
1701 ----+----*----+----*----+----*----+----*----+----* 1750
msh06100 559 .................................................. 559
fj22550 1701 CTTCTGGCCCCAGAAACAGCAGGTGCTGGATTTGCAGCCCTGGCCCTCCA 1750
1751 ----+----*----+----*----+----*----+----*----+----* 1800
msh06100 559 .................................................. 559
fj22550 1751 GGCCCCAACAGGGCGACAGTGTAGGGCCAGCCTGGAGCAGGGCTTTTCCA 1800
1801 ----+----*----+----*----+----*----+----*----+----* 1850
msh06100 559 .................................................. 559
fj22550 1801 AGGCTGCTGAAGCCAGCCCTCCTCACTTGGGCTGACTACCAGGACCCAGA 1850
1851 ----+----*----+----*----+----*----+----*----+----* 1900
msh06100 559 .................................................. 559
fj22550 1851 AGGAACTCAGGGTGAAGCTCATTTTATTCTCAAGCCTGCGTCTCAGCAGC 1900
1901 ----+----*----+----*----+----*----+----*----+----* 1950
msh06100 559 .................................................. 559
fj22550 1901 AAAGTTGGTGTTTTCTTCCTGTGTTAAAATCTGAGAAAGAAGGCCAGGTG 1950
1951 ----+----*----+----*----+----*----+----*----+----* 2000
msh06100 559 .................................................. 559
fj22550 1951 CGGTGGCTCACGCCTGTAATTCCAGGACTTTGGAAGGCTGAGGCGGGCAG 2000
2001 ----+----*----+----*----+----*----+----*----+----* 2050
msh06100 559 .................................................. 559
fj22550 2001 ATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACGTGGTGAAACCCC 2050
2051 ----+----*----+----*----+----*----+----*----+----* 2100
msh06100 559 .................................................. 559
fj22550 2051 GTCTCTACTAAAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGC 2100
2101 ----+----*----+----*----+----*----+----*----+----* 2150
msh06100 559 .................................................. 559
fj22550 2101 TTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCC 2150
2151 ----+----*----+----*----+----*----+----*----+----* 2200
msh06100 559 .................................................. 559
fj22550 2151 GGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCTAGCCT 2200
2201 ----+----*----+----*----+----*----+----*----+----* 2250
msh06100 559 .................................................. 559
fj22550 2201 GGGTGACAGAGCGAGACTCCGTCCCCAAAAAAAAAATTCTGAGAATATGG 2250
2251 ----+----*----+----*----+----*----+----*----+----* 2300
msh06100 559 .................................................. 559
fj22550 2251 TGTGTTCCAGCCTCTTCAAAGCTCTGCTCTTCTGCACACGTTTTTTGAAG 2300
2301 ----+----*----+----*----+----*----+----*----+----* 2350
msh06100 559 .................................................. 559
fj22550 2301 GCCTTAAAAAGGCCACCAGTGTGACCAGGGAGCACCCTCTGCCTCCCTCC 2350
2351 ----+----*----+----*----+----*----+----*----+----* 2400
msh06100 559 .................................................. 559
fj22550 2351 CTGCACTGGGACCATAAACATAAACAGCTCTACCAGCAAAGTGACCCATC 2400
2401 ----+----*----+----*----+----*----+----*----+----* 2450
msh06100 559 .................................................. 559
fj22550 2401 CCGCGGGGGAGGCCTGCGCACGCCCCTCACCAGGGCTGTCATCAGAATCC 2450
2451 ----+----*----+----*----+----*----+----*----+----* 2500
msh06100 559 .................................................. 559
fj22550 2451 AGTCTTAGGACAGAGGAAGGATGTTTGCCTTCAGGACCAGCAAGTCACAG 2500
2501 ----+----*----+----*----+----*----+----*----+----* 2550
msh06100 559 .................................................. 559
fj22550 2501 GTGTCCTGGATGTTACCCAAGCTCTAAAATCAAATAAAACCCATCAGTAT 2550
2551 ----+----*----+----*----+----*----+----*----+----* 2600
msh06100 559 .................................................. 559
fj22550 2551 TTAGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 2600
2601 ----+----*----+----*----+----*----+----*----+----* 2650
msh06100 559 .................................................. 559
fj22550 2601 GTGTGTGTATGAGTGTATGAAGGGAAATGGAAAGCAGAGAAAAGTCGCGT 2650
2651 ----+----*----+----*----+----*----+----*----+----* 2700
msh06100 559 .................................................. 559
fj22550 2651 GCCCTCCCCCAGGCACCTGATCTGCCCACAGACCCTTCAATGGGGACATC 2700
2701 ----+----*----+----*----+----*----+----*----+----* 2750
msh06100 559 .................................................. 559
fj22550 2701 TCTGGTCCCAATGGTCGTAAATAAAGGCTAAGCGCTGGATTTTTCCATGG 2750
2751 ----+----*----+----*----+----*----+----*----+----* 2800
msh06100 559 .................................................. 559
fj22550 2751 CCCCCTGACTCCTCAGGAGCGCAGGCAGAGGAGGTAAACAGGAGGCCAGG 2800
2801 ----+----*----+----*----+----*----+----*----+----* 2850
msh06100 559 .................................................. 559
fj22550 2801 TTACCCATGAGATGACCAGAAGCTCATCCAGGGCCGGGACCCTGGTTCAT 2850
2851 ----+----*----+----*----+----*----+----*----+----* 2900
msh06100 559 .................................................. 559
fj22550 2851 CTCGTGAATTCTTGGCAGCGGCTCCAGGCTGGGCACATTAGATGCTGTCA 2900
2901 ----+----*----+----*----+----*----+----*----+----* 2950
msh06100 559 .................................................. 559
fj22550 2901 TGTGACTGGCCTGGTGGCCACCTCTTGGTTCTCTGGAAATGTGTCCACTC 2950
2951 ----+----*----+----*----+----*----+----*----+----* 3000
msh06100 559 .................................................. 559
fj22550 2951 TGTGCTCAGGGAAGAAGGCTGCCGTCCTGACCTGTCAGCCACCAGGCCCT 3000
3001 ----+----*----+----*----+----*----+----*----+----* 3050
msh06100 559 .................................................. 559
fj22550 3001 CTCTGAACTCCTCACTTGACCCGGAGGCATTGGGAGCAAACACAAAGCTC 3050
3051 ----+----*----+----*----+----*----+----*----+----* 3100
msh06100 559 .................................................. 559
fj22550 3051 GCCCCTGGTGTCAGTGGTGCAGACAGAGGAAAAGCAGAGGGTCCGCAAAA 3100
3101 ----+----*----+----*----+----*----+----*----+----* 3150
msh06100 559 .................................................. 559
fj22550 3101 TGCAACTCCTCCGTGGTGAGACTTTGAAAAGGTGTAGAGTGGTTGCAGAC 3150
3151 ----+----*----+----*----+----*----+----*----+----* 3200
msh06100 559 .................................................. 559
fj22550 3151 AAACAGCAAAGGAGTGGAATGGAAAAATCTCTCTTGCTCCCCACAAGAAG 3200
3201 ----+----*----+----*----+----*----+----*----+----* 3250
msh06100 559 .................................................. 559
fj22550 3201 TCCACTCCCCTACGGATTCCTCAGATGCCACTGGCTGGCACAGCCTTTCC 3250
3251 ----+----*----+----*----+----*----+----*----+----* 3300
msh06100 559 .................................................. 559
fj22550 3251 CGCCCTTGGTGTGGGAGCAGCAGAAGTCCAGCGGGGGTGGGAGAATCATC 3300
3301 ----+----*----+----*----+----*----+----*----+----* 3350
msh06100 559 .................................................. 559
fj22550 3301 GGGGTCAGGTCAGTGTCTCCCTCGTCTGAAGTCAACCACTACTTTTCCCT 3350
3351 ----+----*----+----*----+----*----+----*----+----* 3400
msh06100 559 .................................................. 559
fj22550 3351 CAAGCCTACCAAAGAGCTAAAGTCTGATCTGTAGATGTCTGATGGTTTGA 3400
3401 ----+----*----+----*----+----*----+----*----+----* 3450
msh06100 559 .................................................. 559
fj22550 3401 GGAGAAGAAAAGATAGTCTTTTAGAGAAGTGGGGAGTATCCAACTTAGGG 3450
3451 ----+----*----+----*----+----*----+----*----+----* 3500
msh06100 559 .................................................. 559
fj22550 3451 TCAAAATACACTGAGATTAGGCCGGGCACAGTGGCTCACACCTGTAATCC 3500
3501 ----+----*----+----*----+----*----+----*----+----* 3550
msh06100 559 .................................................. 559
fj22550 3501 CAGTGCTTTGGGAGGCCGAGGCGGATGGATCACTTGAGGCCTCCAGGAGT 3550
3551 ----+----*----+----*----+----*----+----*----+----* 3600
msh06100 559 .................................................. 559
fj22550 3551 TCGAGACCAGCCTGGCCAACATGGCGAAACCCCGTCTCTACTAAAATACA 3600
3601 ----+----*----+----*----+----*----+----*----+----* 3650
msh06100 559 .AAACTTTGCTTTAATTGCTG............................. 578
||| || ||| | || ||
fj22550 3601 AAAAATTAGCTGGATGTGGTGGTGGGTGCCTGTAATCTCAGCTACTCAAG 3650
3651 ----+----*----+----*----+----*----+----*----+----* 3700
msh06100 579 ...................................TGTAATATGCATTAA 593
|| || ||||| | |
fj22550 3651 GAGGCTGAGGCACAAGAATAGCTTGAACCGGGAGATGGAAGATGCAGTGA 3700
3701 ----+----*----+----*----+----*----+----*----+--- 3748
msh06100 594 TGCATAATAAAGCATTCATACTG......................... 616
|| || | || |||
fj22550 3701 GCCAAGATCACGCCCCTGCACTCCAGCCTGGGCGACAGAGACTCCGTC 3748