FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0014.ptfa, 453 aa vs ./tmplib.26680 library 1768564 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.7530+/-0.00406; mu= 14.6561+/- 0.272 mean_var=83.2597+/-18.921, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.1406 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mFLJ00348 ( 1089 res) mth00001 (1089) 137 38 0.0044 mKIAA1986 ( 767 res) mph02350 ( 767) 130 36 0.0094 >>mFLJ00348 ( 1089 res) mth00001 (1089 aa) initn: 70 init1: 70 opt: 137 Z-score: 147.7 bits: 37.8 E(): 0.0044 Smith-Waterman score: 137; 25.676% identity (27.404% ungapped) in 222 aa overlap (168-384:817-1029) 140 150 160 170 180 190 mKIAA0 YTFLREALQSSVASPLRLCCRDLRAEDLPMRNTVALLQLLDAG-CLRRIDLRFNNLGLRG :...:: . : .. :. .::. :... : mFLJ00 GLIGAQQMADALKQNRSLKALMFSSNTIGDRGAIALAEALKVNQILENLDLQSNSISDMG 790 800 810 820 830 840 200 210 220 230 240 250 mKIAA0 LSVIIPHVARFQHLASLRLHYVHGDSRQPSVDGEDNFRYFLAQMGRFMCLRELSMGSSLL ..:.. . : :.:: : :. :.. : . . . : :..:.. ..:: mFLJ00 VTVLMRALCSNQTLSSLNL-------RENSISPEGA-QALTQALCRNNTLKHLDLTANLL 850 860 870 880 890 260 270 280 290 300 310 mKIAA0 SGRLDQLLSTL---QRPLESLELAFCALLPEDLCFLAQSSHAAH-LKKLDLSGNDLSGNQ : : ... .. : :.: . . :.:. . . : :::. : .. . mFLJ00 HDRGAQAIAVAVGENHSLTHLHLQWNFIQAGAARALGQALQLNRTLTTLDLQENAIGDEG 900 910 920 930 940 950 320 330 340 350 360 370 mKIAA0 LTPFQGLLQAVATTLLHLELTECQLADAQLLATLPTLTRCASLRYLGLYGNPLSMAGLKE . : :. : :::. : : .... : .:: .:. : : :: .. :: : mFLJ00 ASSVAGALK-VNTTLIALYLQVASIGSQGAQALGEALTVNRTLEILDLRGNDVGAAGAKA 960 970 980 990 1000 1010 380 390 400 410 420 430 mKIAA0 LLRDSVVQAELRTVVHPFPVDCYEGLPWPPPASVLLEASINEEKFARVEAELHQLLLASG : ... :: mFLJ00 LANALKLNSSLRRLNLQENSLGMDGAIFVASALSENHGLHHINLQGNPIGESAARMISEA 1020 1030 1040 1050 1060 1070 >>mKIAA1986 ( 767 res) mph02350 (767 aa) initn: 92 init1: 69 opt: 130 Z-score: 141.8 bits: 36.2 E(): 0.0094 Smith-Waterman score: 130; 23.013% identity (24.336% ungapped) in 239 aa overlap (140-373:156-386) 110 120 130 140 150 160 mKIAA0 QQQGGTAEPGLSPVPVEIRVDLRVNRASYTFLREALQSSVASPLRLCCRDLRAEDLPMRN .::. :: . :. : ::..: : ... mKIAA1 WRHAQNVTVDEVISAYRQACQKLNCRQIPKLLRQ-LQEFTDLEQRINCLDLKGEKLDYKT 130 140 150 160 170 180 170 180 190 200 210 220 mKIAA0 TVALLQLLDAGCLRRIDLRFNNLGLRGLSVIIPHVARFQHLASLRLHYVHGDSRQPSVDG :: ... .. .::. .:: : :... . .. . : . . ... .. : mKIAA1 CEALEEVFKRLQFKVVDLEQTNLDEDGASALFDMIEYYESATHLNISF----NKHIGTRG 190 200 210 220 230 240 230 240 250 260 270 280 mKIAA0 EDNFRYFLAQMGRFMCLRELSMGSSLLSGRLDQLLSTLQR---PLESLELAFCALLPEDL . .. : . ::. :. .. : . ... : : :.: .: . : mKIAA1 WQAAAHM---MRKTSCLQYLDARNTPLLDHSAPFVARALRIRSSLAVLHLENASLSGRPL 250 260 270 280 290 290 300 310 320 330 340 mKIAA0 CFLAQS-SHAAHLKKLDLSGNDLSGNQLTPFQGLLQAVATTLLHLELTECQLADAQLLAT .:: . . .:..: :. : :.: : . : : .: :.: . .. :. : mKIAA1 MLLATALKMNMNLRELYLADNKLNGLQDSAQLGNLLKFNCSLQILDLRNNHVLDSGLAYI 300 310 320 330 340 350 350 360 370 380 390 400 mKIAA0 LPTLTRC-ASLRYLGLYGNPLSMAGLKELLRDSVVQAELRTVVHPFPVDCYEGLPWPPPA : . .: : :..: :. .:. : mKIAA1 CEGLKEQRKGLVTLVLWNNQLTHTGMAFLGMALPHTQSLETLNLGHNPIGNEGVRNLKNG 360 370 380 390 400 410 453 residues in 1 query sequences 1768564 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:10:33 2006 done: Mon Mar 27 10:10:34 2006 Scan time: 0.660 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]