Comparison of KIAA cDNA sequences between mouse and human (KIAA0014)

<<Original sequence data>>

mouse  mKIAA0014 (msh04335)     length:   2839 bp, CDS:  1041 -  2372
human   KIAA0014  (ha00442)     length:   5323 bp, CDS:    87 -  1628

In this page, the longest coding region predicted by GeneMark
was assigned as CDS for each of mouse and human KIAA cDNAs.
They were colored in green.  When the CDS positions were not identical
on the aligned sequences between mouse and human cDNAs, mouse cDNA
sequence was translated based on the human CDS information.
The amino acid sequence produced here may not be identical to the
protein sequence deduced (see Description).


<<Aligned sequence information>>

----------------------------------------------------------
            region      #match  #mismatch  %diff
----------------------------------------------------------
DNA

5'UTR:     57 -  1041     223       74      24.9
  CDS:   1042 -  2376    1130      202      15.2
3'UTR:   2377 -  6060     286      189      39.8

amino acid

  CDS:   1042 -  2376     414       31      7.0
----------------------------------------------------------


<<Alignment>>

             1 ----+----*----+----*----+----*----+----*----+----* 50
msh04335     1 TGGGCGAGGAAGGGTTGCAGGCCTTGGTAGTCGGGGAGGCGGATGAGCGG 50
                                                                 
ha00442      1 .................................................. 1

            51 ----+----*----+----*----+----*----+----*----+----* 100
msh04335    51 GGGCCGCGGGGCTGGGATTCGAGTCGAGCTGAGAGTCAAGCAGCCGTTAG 100
                     ||||||||                                    
ha00442      1 ......CGGGGCTG.................................... 8

           101 ----+----*----+----*----+----*----+----*----+----* 150
msh04335   101 TGGTCAGGGCACTTGGACGGCAGGTTCGACGGGGACTGGCGCTTGAAGAC 150
                                                                 
ha00442      9 .................................................. 9

           151 ----+----*----+----*----+----*----+----*----+----* 200
msh04335   151 CACGGCTGAGGCGGATTCTCGGGAGGTGCCGCCGGCGCGCGGGGATGGGC 200
                      |||||||   ||  ||  | |   ||||| |   |        
ha00442      9 .......GAGGCGGTGGCTGCGGTTGCGGGACCGGCACTATG........ 43

           201 ----+----*----+----*----+----*----+----*----+----* 250
msh04335   201 CGCAAGCGAAGGGAGACCTAGGGGCGGGCGAGGCCGGTCTCGGCCTGTGG 250
                                                                 
ha00442     44 .................................................. 44

           251 ----+----*----+----*----+----*----+----*----+----* 300
msh04335   251 CTCCAGGCTCGCCCGGGTCAGTTGATGTTCCGGGCTTTTTGTTTTCTCCA 300
                                                                 
ha00442     44 .................................................. 44

           301 ----+----*----+----*----+----*----+----*----+----* 350
msh04335   301 AGGATCCGAGCGTGCGCGTCTGTATGCCGCAGAGACCGCTGTGTCCTGTG 350
                                                                 
ha00442     44 .................................................. 44

           351 ----+----*----+----*----+----*----+----*----+----* 400
msh04335   351 TGCAGTAGCATCACCCAGAAGCAATCCTTGCTTGGAGGCCAGGCGGGCTG 400
                                                                 
ha00442     44 .................................................. 44

           401 ----+----*----+----*----+----*----+----*----+----* 450
msh04335   401 CCACCGGTTCCTCTTATGACAGGTGTTTGGTTGGCTTGTCCTGTCAGTTA 450
                  | ||  | || ||  ||  |||| ||| | | | ||    |      
ha00442     44 ...CTGGGCCTTCCTACCACTTGTGTGTGGCTTGGTAGTGGCCT...... 84

           451 ----+----*----+----*----+----*----+----*----+----* 500
msh04335   451 GGCAGTCCTATTATCTTAAGCTAGAGCCAGATCAAGGACAGTCACGCGGG 500
                                                                 
ha00442     85 .................................................. 85

           501 ----+----*----+----*----+----*----+----*----+----* 550
msh04335   501 GTTCCCCAGGGACGCGTGCCTTAAGGACTCGTAGGAGATGTTAGAAGCAA 550
                                                                 
ha00442     85 .................................................. 85

           551 ----+----*----+----*----+----*----+----*----+----* 600
                                    S  F  W  S  P  V  L  S  L    
msh04335   551 GCAAACCCTGGGCTTCATCAGTCTTTCTGGTCCCCAGTCTTGTCCCTTGC 600
                                  ||  | |||  ||||   |   ||||||   
ha00442     85 ...................AGGGTCTCTCCTCCCTGCTGAAGTCCCT... 112
                                    G  L  S  S  L  L  K  S  L    

           601 ----+----*----+----*----+----*----+----*----+----* 650
msh04335   601 TGCGGCTTTGCGTAAGGCCTAGGCCCTGGTTTTCCATTCTGTTGTGGGCT 650
                                                                 
ha00442    113 .................................................. 113

           651 ----+----*----+----*----+----*----+----*----+----* 700
msh04335   651 GAGGACTGTAGCATAGTTCTGAGGGTAAGGTGTTTTGCCCACAGGAAGTC 700
                                                                 
ha00442    113 .................................................. 113

           701 ----+----*----+----*----+----*----+----*----+----* 750
msh04335   701 TACTGACCCAGGATAGCAAGAATCATTCAGGCTCAGGATCTTTTGTATGT 750
                                                                 
ha00442    113 .................................................. 113

           751 ----+----*----+----*----+----*----+----*----+----* 800
msh04335   751 GGCTTCTCAGCTGGAACGCTTTAGCAGTTTTGGCTTGGATCGTTATGAAT 800
                                                                 
ha00442    113 .................................................. 113

           801 ----+----*----+----*----+----*----+----*----+----* 850
msh04335   801 CTCGTGAATTTAAGACATGGTTTCTCAGTGAAGAGGAGGTACCCGAATAG 850
                                                                 
ha00442    113 .................................................. 113

           851 ----+----*----+----*----+----*----+----*----+----* 900
                          H  R  G  W  L  S  A  Q  S  S  T  M  H  
msh04335   851 GAGACAAGGACCACAGAGGGTGGCTGTCTGCCCAGTCCAGCACCATGCAC 900
                         |  | |  |||||| |||||||| | ||||||||||||||
ha00442    113 ..........CTCCTGCAGGTGGCCGTCTGCCCGGCCCAGCACCATGCAC 152
                          S  C  R  W  P  S  A  R  P  S  T  M  H  

           901 ----+----*----+----*----+----*----+----*----+----* 950
               T  L  V  F  L  S  T  R  Q  V  L  Q  C  Q  P  A  A 
msh04335   901 ACACTTGTGTTCCTCAGCACGCGTCAGGTCCTTCAGTGCCAGCCAGCTGC 950
               || ||||||||| | ||||| || ||||| || |||||||||||||||||
ha00442    153 ACGCTTGTGTTCTTGAGCACACGGCAGGTGCTGCAGTGCCAGCCAGCTGC 202
               T  L  V  F  L  S  T  R  Q  V  L  Q  C  Q  P  A  A 

           951 ----+----*----+----*----+----*----+----*----+----* 1000
                C  Q  A  L  P  L  L  P  R  E  L  F  P  L  L  F  K
msh04335   951 ATGCCAGGCCCTGCCCCTGCTGCCCCGGGAACTCTTCCCTCTGCTCTTCA 1000
                ||||||||||||||||||||||| || ||||||||||| ||||| ||||
ha00442    203 CTGCCAGGCCCTGCCCCTGCTGCCACGCGAACTCTTCCCCCTGCTGTTCA 252
                C  Q  A  L  P  L  L  P  R  E  L  F  P  L  L  F  K

          1001 ----+----*----+----*----+----*----+----*----+----* 1050
                 V  A  F  M  D  K  K  T  L  V  L  R  E  L  V  H  
msh04335  1001 AGGTGGCCTTCATGGACAAAAAGACGCTTGTGCTGCGTGAGCTGGTGCAC 1050
               ||||||||||||||||||| |||||  | || ||||| ||| |||| |||
ha00442    253 AGGTGGCCTTCATGGACAAGAAGACAGTGGTACTGCGCGAGTTGGTACAC 302
                 V  A  F  M  D  K  K  T  V  V  L  R  E  L  V  H  

          1051 ----+----*----+----*----+----*----+----*----+----* 1100
               T  W  P  F  P  L  L  S  F  Q  Q  L  L  Q  E  C  A 
msh04335  1051 ACGTGGCCCTTTCCCCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTGTGC 1100
               ||||||||||| || |||||||| |||||||||||||| |||||||||||
ha00442    303 ACGTGGCCCTTCCCGCTGCTCAGTTTCCAGCAGCTGCTACAGGAGTGTGC 352
               T  W  P  F  P  L  L  S  F  Q  Q  L  L  Q  E  C  A 

          1101 ----+----*----+----*----+----*----+----*----+----* 1150
                H  C  S  R  A  L  L  Q  E  R  L  S  T  E  S  M  Q
msh04335  1101 CCACTGCAGTCGAGCCCTGCTGCAGGAGCGGCTCAGCACAGAAAGCATGC 1150
               ||||||||| || ||||| |||||||||||||  ||||| || |||||||
ha00442    353 CCACTGCAGCCGTGCCCTCCTGCAGGAGCGGCCTAGCACTGAGAGCATGC 402
                H  C  S  R  A  L  L  Q  E  R  P  S  T  E  S  M  Q

          1151 ----+----*----+----*----+----*----+----*----+----* 1200
                 A  V  I  L  G  L  T  A  R  I  H  T  Q  E  T  E  
msh04335  1151 AGGCTGTGATCCTGGGGCTGACAGCTCGGATTCACACTCAAGAAACAGAG 1200
               ||||||| |||||||||||||| || ||| | |||||   |||  | | |
ha00442    403 AGGCTGTTATCCTGGGGCTGACTGCCCGGCTCCACACCTCAGAGCCTGGG 452
                 A  V  I  L  G  L  T  A  R  L  H  T  S  E  P  G  

          1201 ----+----*----+----*----+----*----+----*----+----* 1250
               A  G  T  Q  P  L  C        H  A  L  R  V  L  D  M 
msh04335  1201 GCTGGCACGCAGCCCTTGTGC....AGCATGCATTGCGGGTTCTGGACAT 1246
               ||  |||| |||||| | |||    |||||||  ||||||| ||||||||
ha00442    453 GCCAGCACACAGCCCCTCTGCAGGAAGCATGCGCTGCGGGTGCTGGACAT 502
               A  S  T  Q  P  L  C  R  K  H  A  L  R  V  L  D  M 

          1251 ----+----*----+----*----+----*----+----*----+----* 1300
                T  G  L  L  D  D  G  V  E  Q  D  P  E  T  M  S  M
msh04335  1247 GACGGGTCTCCTGGATGATGGTGTGGAGCAGGATCCTGAAACCATGAGCA 1296
               |||||| ||| |||||||||||||||| ||||||||||  ||||||||||
ha00442    503 GACGGGCCTCTTGGATGATGGTGTGGAACAGGATCCTGGCACCATGAGCA 552
                T  G  L  L  D  D  G  V  E  Q  D  P  G  T  M  S  M

          1301 ----+----*----+----*----+----*----+----*----+----* 1350
                 W  D  C  T  A  A  V  A  R  T  C  I  A  Q  Q  Q  
msh04335  1297 TGTGGGACTGTACAGCCGCTGTAGCCAGAACGTGCATTGCCCAGCAGCAG 1346
               ||||||||||||| || || |||||  | || ||||||||||||||||||
ha00442    553 TGTGGGACTGTACTGCTGCCGTAGCTCGCACATGCATTGCCCAGCAGCAG 602
                 W  D  C  T  A  A  V  A  R  T  C  I  A  Q  Q  Q  

          1351 ----+----*----+----*----+----*----+----*----+----* 1400
               G  G  T  A  E  P  G  L  S  P  V  P  V  E  I  R  V 
msh04335  1347 GGTGGGACTGCCGAGCCAGGGCTGTCACCAGTCCCCGTGGAAATCCGAGT 1396
               |||||| | || ||||| ||||   | ||  ||||||||||  | || ||
ha00442    603 GGTGGGGCCGCAGAGCCTGGGCCAGCCCCCATCCCCGTGGAGGTGCGCGT 652
               G  G  A  A  E  P  G  P  A  P  I  P  V  E  V  R  V 

          1401 ----+----*----+----*----+----*----+----*----+----* 1450
                D  L  R  V  N  R  A  S  Y  T  F  L  R  E  A  L  Q
msh04335  1397 AGACCTTCGGGTAAACCGGGCCTCGTACACATTCCTTCGTGAGGCCCTCC 1446
                ||||| ||||| ||||||||||| ||  | ||||| || ||||| ||||
ha00442    653 GGACCTGCGGGTGAACCGGGCCTCCTATGCGTTCCTGCGGGAGGCACTCC 702
                D  L  R  V  N  R  A  S  Y  A  F  L  R  E  A  L  R

          1451 ----+----*----+----*----+----*----+----*----+----* 1500
                 S  S  V  A  S  P  L  R  L  C  C  R  D  L  R  A  
msh04335  1447 AAAGCAGTGTGGCCAGCCCGCTGCGGCTGTGCTGCCGGGACCTGCGGGCT 1496
                |||||| |||| ||||||||||||||| ||||||||||||||||| |||
ha00442    703 GAAGCAGCGTGGGCAGCCCGCTGCGGCTCTGCTGCCGGGACCTGCGAGCT 752
                 S  S  V  G  S  P  L  R  L  C  C  R  D  L  R  A  

          1501 ----+----*----+----*----+----*----+----*----+----* 1550
               E  D  L  P  M  R  N  T  V  A  L  L  Q  L  L  D  A 
msh04335  1497 GAGGATCTACCCATGCGTAACACTGTGGCCCTGCTACAGCTTTTAGATGC 1546
               ||||| || |||||||| ||||||||||||||||| |||||| | |||||
ha00442    753 GAGGACCTGCCCATGCGCAACACTGTGGCCCTGCTGCAGCTTCTGGATGC 802
               E  D  L  P  M  R  N  T  V  A  L  L  Q  L  L  D  A 

          1551 ----+----*----+----*----+----*----+----*----+----* 1600
                G  C  L  R  R  I  D  L  R  F  N  N  L  G  L  R  G
msh04335  1547 AGGCTGTCTGCGCCGGATAGACCTGCGCTTCAATAACCTGGGCTTGCGTG 1596
               |||||| ||||||||  | |||||||||||||| || |||||| |||| |
ha00442    803 AGGCTGCCTGCGCCGCGTGGACCTGCGCTTCAACAATCTGGGCCTGCGCG 852
                G  C  L  R  R  V  D  L  R  F  N  N  L  G  L  R  G

          1601 ----+----*----+----*----+----*----+----*----+----* 1650
                 L  S  V  I  I  P  H  V  A  R  F  Q  H  L  A  S  
msh04335  1597 GCCTGTCTGTCATTATCCCACATGTGGCCCGCTTTCAGCACTTAGCTAGC 1646
               |||||||||| || |||||||| ||||||||||| |||||| | || |||
ha00442    853 GCCTGTCTGTGATCATCCCACACGTGGCCCGCTTCCAGCACCTGGCCAGC 902
                 L  S  V  I  I  P  H  V  A  R  F  Q  H  L  A  S  

          1651 ----+----*----+----*----+----*----+----*----+----* 1700
               L  R  L  H  Y  V  H  G  D  S  R  Q  P  S  V  D  G 
msh04335  1647 CTGAGGCTGCACTACGTGCATGGGGACTCAAGACAGCCTTCCGTGGACGG 1696
               ||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||
ha00442    903 CTGCGGCTCCACTATGTGCATGGGGATTCAAGGCAGCCCTCCGTGGATGG 952
               L  R  L  H  Y  V  H  G  D  S  R  Q  P  S  V  D  G 

          1701 ----+----*----+----*----+----*----+----*----+----* 1750
                E  D  N  F  R  Y  F  L  A  Q  M  G  R  F  M  C  L
msh04335  1697 GGAGGACAACTTTCGCTACTTTCTGGCCCAGATGGGCCGGTTTATGTGTC 1746
                ||||||||||| |||||||| || |||||||||||||| || |  ||||
ha00442    953 CGAGGACAACTTCCGCTACTTCCTTGCCCAGATGGGCCGCTTCACCTGTC 1002
                E  D  N  F  R  Y  F  L  A  Q  M  G  R  F  T  C  L

          1751 ----+----*----+----*----+----*----+----*----+----* 1800
                 R  E  L  S  M  G  S  S  L  L  S  G  R  L  D  Q  
msh04335  1747 TTCGGGAGCTCAGCATGGGGTCTTCTCTCCTTTCAGGCAGGCTGGATCAA 1796
               | || |||||||||||||| || |||||||||||||| |||||||| || 
ha00442   1003 TGCGTGAGCTCAGCATGGGCTCCTCTCTCCTTTCAGGGAGGCTGGACCAG 1052
                 R  E  L  S  M  G  S  S  L  L  S  G  R  L  D  Q  

          1801 ----+----*----+----*----+----*----+----*----+----* 1850
               L  L  S  T  L  Q  R  P  L  E  S  L  E  L  A  F  C 
msh04335  1797 CTGCTCAGCACCCTGCAGAGGCCCCTGGAAAGCCTAGAACTGGCCTTCTG 1846
               |||||||||||||||||||| |||||||| ||||| ||  ||||||||||
ha00442   1053 CTGCTCAGCACCCTGCAGAGCCCCCTGGAGAGCCTGGAGTTGGCCTTCTG 1102
               L  L  S  T  L  Q  S  P  L  E  S  L  E  L  A  F  C 

          1851 ----+----*----+----*----+----*----+----*----+----* 1900
                A  L  L  P  E  D  L  C  F  L  A  Q  S  S  H  A  A
msh04335  1847 TGCGCTCTTGCCTGAGGACCTATGCTTCCTGGCTCAGAGTTCTCATGCTG 1896
               ||| ||  |||||||||||||| |||||||||| | |||  | |||||||
ha00442   1103 TGCTCTGCTGCCTGAGGACCTACGCTTCCTGGCACGGAGCCCACATGCTG 1152
                A  L  L  P  E  D  L  R  F  L  A  R  S  P  H  A  A

          1901 ----+----*----+----*----+----*----+----*----+----* 1950
                 H  L  K  K  L  D  L  S  G  N  D  L  S  G  N  Q  
msh04335  1897 CCCATCTCAAAAAGTTGGATTTGAGTGGCAACGACCTGTCAGGCAACCAG 1946
               |||| ||||| ||||||||  ||||||| ||||||||||| |||| ||||
ha00442   1153 CCCACCTCAAGAAGTTGGACCTGAGTGGTAACGACCTGTCTGGCAGCCAG 1202
                 H  L  K  K  L  D  L  S  G  N  D  L  S  G  S  Q  

          1951 ----+----*----+----*----+----*----+----*----+----* 2000
               L  T  P  F  Q  G  L  L  Q  A  V  A  T  T  L  L  H 
msh04335  1947 TTGACACCCTTCCAGGGTCTGCTGCAGGCAGTAGCCACCACACTGCTGCA 1996
                || ||||||||||||||||| ||||||||  |||  |||||||| ||||
ha00442   1203 CTGGCACCCTTCCAGGGTCTGTTGCAGGCATCAGCAGCCACACTGTTGCA 1252
               L  A  P  F  Q  G  L  L  Q  A  S  A  A  T  L  L  H 

          2001 ----+----*----+----*----+----*----+----*----+----* 2050
                L  E  L  T  E  C  Q  L  A  D  A  Q  L  L  A  T  L
msh04335  1997 TCTTGAGCTGACTGAGTGCCAGCTTGCTGATGCCCAGCTGTTGGCTACCC 2046
               ||| |||||||||||||| ||||| || ||  ||||||||||||| || |
ha00442   1253 TCTGGAGCTGACTGAGTGTCAGCTCGCAGACACCCAGCTGTTGGCCACAC 1302
                L  E  L  T  E  C  Q  L  A  D  T  Q  L  L  A  T  L

          2051 ----+----*----+----*----+----*----+----*----+----* 2100
                 P  T  L  T  R  C  A  S  L  R  Y  L  G  L  Y  G  
msh04335  2047 TGCCCACCCTCACTCGATGTGCCAGTCTCCGCTACCTTGGTCTCTATGGC 2096
               | |||| ||| ||||  || ||||||||||| |||||||| |||||||||
ha00442   1303 TACCCATCCTGACTCAGTGCGCCAGTCTCCGGTACCTTGGCCTCTATGGC 1352
                 P  I  L  T  Q  C  A  S  L  R  Y  L  G  L  Y  G  

          2101 ----+----*----+----*----+----*----+----*----+----* 2150
               N  P  L  S  M  A  G  L  K  E  L  L  R  D  S  V  V 
msh04335  2097 AACCCTTTGTCTATGGCAGGACTTAAAGAACTGCTTCGGGACTCTGTGGT 2146
               |||||  |||| ||||| || || || || ||||| |||||||| |||| 
ha00442   1353 AACCCACTGTCCATGGCGGGCCTCAAGGAGCTGCTGCGGGACTCAGTGGC 1402
               N  P  L  S  M  A  G  L  K  E  L  L  R  D  S  V  A 

          2151 ----+----*----+----*----+----*----+----*----+----* 2200
                Q  A  E  L  R  T  V  V  H  P  F  P  V  D  C  Y  E
msh04335  2147 ACAGGCTGAGCTACGTACCGTGGTACACCCCTTCCCTGTGGACTGCTATG 2196
               |||||||||||| ||||| ||||| |||||||||||||||||||||||||
ha00442   1403 ACAGGCTGAGCTGCGTACTGTGGTGCACCCCTTCCCTGTGGACTGCTATG 1452
                Q  A  E  L  R  T  V  V  H  P  F  P  V  D  C  Y  E

          2201 ----+----*----+----*----+----*----+----*----+----* 2250
                 G  L  P  W  P  P  P  A  S  V  L  L  E  A  S  I  
msh04335  2197 AGGGTCTTCCTTGGCCACCACCTGCCTCTGTCCTTCTGGAAGCCTCCATC 2246
               ||||  | || ||||| || |||||||||||||| ||||| |||||||||
ha00442   1453 AGGGCTTGCCCTGGCCGCCGCCTGCCTCTGTCCTGCTGGAGGCCTCCATC 1502
                 G  L  P  W  P  P  P  A  S  V  L  L  E  A  S  I  

          2251 ----+----*----+----*----+----*----+----*----+----* 2300
               N  E  E  K  F  A  R  V  E  A  E  L  H  Q  L  L  L 
msh04335  2247 AATGAGGAGAAGTTTGCCCGGGTGGAAGCTGAGTTACACCAACTGCTGTT 2296
               |||||||||||||||||||| || ||||||||||| ||||| |||||  |
ha00442   1503 AATGAGGAGAAGTTTGCCCGCGTAGAAGCTGAGTTGCACCAGCTGCTTCT 1552
               N  E  E  K  F  A  R  V  E  A  E  L  H  Q  L  L  L 

          2301 ----+----*----+----*----+----*----+----*----+----* 2350
                A  S  G  R  A  H  V  L  W  T  T  D  I  Y  G  R  L
msh04335  2297 AGCTTCGGGCCGTGCCCATGTGCTCTGGACCACAGACATCTATGGCCGGC 2346
               ||| || |||||||||||||||||||||||||| |||||||| || || |
ha00442   1553 AGCCTCAGGCCGTGCCCATGTGCTCTGGACCACGGACATCTACGGGCGAC 1602
                A  S  G  R  A  H  V  L  W  T  T  D  I  Y  G  R  L

          2351 ----+----*----+----*----+----*----+----*----+----* 2400
                 A  A  D  Y  F  S  L  *                          
msh04335  2347 TAGCTGCAGACTATTTTAGCCTCTGATCTCCAGGGT.............. 2382
               | ||||| ||||| || ||||| ||||      | |              
ha00442   1603 TGGCTGCGGACTACTTCAGCCTATGATGAAGTAGCTCTGGGTGAGACACA 1652
                 A  A  D  Y  F  S  L  *                          

          2401 ----+----*----+----*----+----*----+----*----+----* 2450
msh04335  2383 ..............................................CATA 2386
                                                             | | 
ha00442   1653 GGCCGCCCTGCAGTCTCTTTAGGTAGGCAGGGCCTTTGCTGGGACCCCTG 1702

          2451 ----+----*----+----*----+----*----+----*----+----* 2500
msh04335  2387 GTGAAGCCTGACACAAAGGCTCT.GTCTTAGGTTTTCTGC..AGTTTGCC 2433
               ||| || |   |||||| || || ||    ||||| ||||   || | ||
ha00442   1703 GTGGAGGCCTTCACAAAAGCACTGGTTACTGGTTTCCTGCTGGGTCTACC 1752

          2501 ----+----*----+----*----+----*----+----*----+----* 2550
msh04335  2434 TTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCA 2483
               || || ||||| | ||||  || | |  |||||||||||||| |||  | 
ha00442   1753 TTGCTTCTGGGCACACCTCAAGCCTCCCCTGCTTTCTGCAGTGCCCCACG 1802

          2551 ----+----*----+----*----+----*----+----*----+----* 2600
msh04335  2484 CCTGCTCCCAGTATCT...........................GGCAGCC 2506
               |    | ||     ||                           |||  | 
ha00442   1803 CGGTTTTCCCTGCACTTGCTCCATAATTGGCTGATCATCTGTGGGCCCCG 1852

          2601 ----+----*----+----*----+----*----+----*----+----* 2650
msh04335  2507 TGTTGCTATCTCAGGCCTGTGCGCCCCTGTTCTGTTT.GATGTACTTGTT 2555
                |     || ||||||||      ||||| || |||| | || | |||  
ha00442   1853 GGGCTGGATGTCAGGCCTCCATTGCCCTGCTCAGTTTGGCTGCATTTGGC 1902

          2651 ----+----*----+----*----+----*----+----*----+----* 2700
msh04335  2556 GGCTCTGTTGGGTTGTAGTCTCTCTGTAGAAA.................. 2587
                ||  | | ||||  | ||| || |||  |||                  
ha00442   1903 TGCCGTCTGGGGTCCTGGTC.CTTTGTGCAAATGCTTTGGGATTCCAGTT 1951

          2701 ----+----*----+----*----+----*----+----*----+----* 2750
msh04335  2588 ...................ACGCTTCCTGGACACATCCCATGCCCTAAGC 2618
                                     ||  |||| |   |||  | || | |  
ha00442   1952 GTGAGCTGAGAGAGATGATGGCCTCTCTGGGCCTTTCCTCTCCCTTTACT 2001

          2751 ----+----*----+----*----+----*----+----*----+----* 2800
msh04335  2619 AGGCATGCAGTGC.ACTGAGGTAGATGT..CAGGGTGATCTGCTTCAGGG 2665
                 |    ||||||  ||| ||| || ||   |  | |  |||||||||||
ha00442   2002 GAGAGCTCAGTGCTTCTGGGGTTGAAGTTGGACAGAGGCCTGCTTCAGGG 2051

          2801 ----+----*----+----*----+----*----+----*----+----* 2850
msh04335  2666 CATTTTGGGGT...............CTTACATTGTGTACCCTGCCTGGC 2700
                |  | || ||               | |     |||| |||| ||  ||
ha00442   2052 AAGCTGGGAGTCCCCAGGCACTCACGCCTCTTACGTGTTCCCTACCCTGC 2101

          2851 ----+----*----+----*----+----*----+----*----+----* 2900
msh04335  2701 ACCCTA...............TTACCTGGCTCTGGAGGGTGTGGATAAGG 2735
                 || |               |   || |  |||||||| ||    ||||
ha00442   2102 CACCCAGCCACCCCACTGGGCTGGGCTCGGGCTGGAGGGGGTCATCAAGG 2151

          2901 ----+----*----+----*----+----*----+----*----+----* 2950
msh04335  2736 TACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTTTTTTGATGTGT 2785
               |||| | |||      ||||||  ||||||| | |||| ||||  | | |
ha00442   2152 TACACATGTG.....CCTGGAAGTTGAATTTGT.GGCTGTTTTTTTTTCT 2195

          2951 ----+----*----+----*----+----*----+----*----+----* 3000
msh04335  2786 GTCCTAATTGG....................................... 2796
               ||||   ||||                                       
ha00442   2196 GTCCACGTTGGTCACCCTTATCCTTATCTCTGCTGTCACCCCCAACATGG 2245

          3001 ----+----*----+----*----+----*----+----*----+----* 3050
msh04335  2797 .................................................. 2797
                                                                 
ha00442   2246 CCACCGGGCAACAACTGCCATCCAGCCTGTCGCCCCGCCCTTCGCGGGGC 2295

          3051 ----+----*----+----*----+----*----+----*----+----* 3100
msh04335  2797 .................................................. 2797
                                                                 
ha00442   2296 AGCCCCGTCGGCACTGCCGGCCAGTCCTTGCTCTTCCCACCTTTCGGAGG 2345

          3101 ----+----*----+----*----+----*----+----*----+----* 3150
msh04335  2797 .................................................. 2797
                                                                 
ha00442   2346 CCCAAGATCCTACTGTGGCCGGCCAGGGCCAGCGAGGGACCCCCCCCATG 2395

          3151 ----+----*----+----*----+----*----+----*----+----* 3200
msh04335  2797 .................................................. 2797
                                                                 
ha00442   2396 CAGAGCTGGAGGTTGGGGTGATGTCTTTTCGGAAGAGCTTCAAGGGAGGT 2445

          3201 ----+----*----+----*----+----*----+----*----+----* 3250
msh04335  2797 .................................................. 2797
                                                                 
ha00442   2446 GTTGGGGCCTCCCCGGCCACCTTCCATTGCTACCCCAGGATTCCCGAGTG 2495

          3251 ----+----*----+----*----+----*----+----*----+----* 3300
msh04335  2797 .................................................. 2797
                                                                 
ha00442   2496 CAACGTTCCCGGCTCGCGCCCCACACACGGCTCAGCGCACACTGCGCGGC 2545

          3301 ----+----*----+----*----+----*----+----*----+----* 3350
msh04335  2797 .................................................. 2797
                                                                 
ha00442   2546 TTCCACCTTTACTGACGGAGCATGCGCGAGGCCGCACCGGCCAATCTCCG 2595

          3351 ----+----*----+----*----+----*----+----*----+----* 3400
msh04335  2797 .................................................. 2797
                                                                 
ha00442   2596 GCGCCCACGTCATCCGCGCGCCCGCGGCCCTAGCAGTGGATCTCGTAGGC 2645

          3401 ----+----*----+----*----+----*----+----*----+----* 3450
msh04335  2797 .................................................. 2797
                                                                 
ha00442   2646 GACCGGCGGGGGCACGCGGAGTCCCGGCCCCGCCCCCTGTTCCGGGCCGC 2695

          3451 ----+----*----+----*----+----*----+----*----+----* 3500
msh04335  2797 .................................................. 2797
                                                                 
ha00442   2696 AGTCAGCGGGCGCCTCCGCCGGACCCTCGGCGAAGAGCGGCTTGGAGCGG 2745

          3501 ----+----*----+----*----+----*----+----*----+----* 3550
msh04335  2797 .................................................. 2797
                                                                 
ha00442   2746 TTGATGACGAACATCTCGTGGCCGCGCTCGTCGCGGAGCTCCTCTAGCTG 2795

          3551 ----+----*----+----*----+----*----+----*----+----* 3600
msh04335  2797 .................................................. 2797
                                                                 
ha00442   2796 TGCGAACGTACAGGGGCCGTCCAAGTAGTCGTTGACGAACAGCGCTCCCT 2845

          3601 ----+----*----+----*----+----*----+----*----+----* 3650
msh04335  2797 .................................................. 2797
                                                                 
ha00442   2846 CCCCCGGAGGCCCCCGCGCCTTTTTTCGCCTGCGGCGCCGGCGACAGATC 2895

          3651 ----+----*----+----*----+----*----+----*----+----* 3700
msh04335  2797 .................................................. 2797
                                                                 
ha00442   2896 ATGGCGACCAGGAGCAGCGCCGTGAGCGCCAGCAGCGCGATGGCCGCCGC 2945

          3701 ----+----*----+----*----+----*----+----*----+----* 3750
msh04335  2797 .................................................. 2797
                                                                 
ha00442   2946 AATGGCCGTCTGTGTGGCCACGCCCAGGGCGCGGAAGGCCATGCTGCCCG 2995

          3751 ----+----*----+----*----+----*----+----*----+----* 3800
msh04335  2797 .................................................. 2797
                                                                 
ha00442   2996 CCTCGGGCCGGGGCTCGCTGCCGGCGGGGCGGGCGGCCGGAGGCGGCGGT 3045

          3801 ----+----*----+----*----+----*----+----*----+----* 3850
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3046 TGCGCGGGCTGCTGCGGCTGCTGCCGGGACGCGTTGACCAGGAGCCGGAA 3095

          3851 ----+----*----+----*----+----*----+----*----+----* 3900
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3096 GGGCACGCGGGCAGCGCCGCCGGCGTTGGAGGCCTCGCACTCGTACTTAC 3145

          3901 ----+----*----+----*----+----*----+----*----+----* 3950
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3146 CGGCGTGCGCCAGCGTGATGTTGCTGAGGAAGAGCATGCCGCTGCCCGTG 3195

          3951 ----+----*----+----*----+----*----+----*----+----* 4000
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3196 TCGGATGCCGAGTGTCCGCCCAGGCCCAGCAACCCGCCTTCTAGCTGGGC 3245

          4001 ----+----*----+----*----+----*----+----*----+----* 4050
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3246 CTGGGCTCGCGGCCGGCCCTCGCGAGGCTGGGGCACCTTTCTCCAGGTCA 3295

          4051 ----+----*----+----*----+----*----+----*----+----* 4100
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3296 CCAATGGCTGCGGGTAGCCGGAGGCTTGGCAGGCAACCCGCAGGTCCTCA 3345

          4101 ----+----*----+----*----+----*----+----*----+----* 4150
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3346 CCCAGGTTGGCTGTGAGCTCCAGCGGCTGCACGTGGACAGAGGGCGGAAT 3395

          4151 ----+----*----+----*----+----*----+----*----+----* 4200
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3396 GCAGATGAGGCTGCTGTGGGATACGTCCAGGAGACTCTGGAGCGCCAGGC 3445

          4201 ----+----*----+----*----+----*----+----*----+----* 4250
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3446 GCGGGGGCTCTGCACACATGATCTTCCTGTCCCTGGAGGTGAGCAGCCGC 3495

          4251 ----+----*----+----*----+----*----+----*----+----* 4300
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3496 TGGCCGCCCTCCTTGATCCAGGCCCCCAGCCAGTGCAGGGCGCAGTCACA 3545

          4301 ----+----*----+----*----+----*----+----*----+----* 4350
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3546 GCGCCATGGGTTCTCTGTGGGAGAGCAGCGTTAGGCAGGTGGCTTGAGGG 3595

          4351 ----+----*----+----*----+----*----+----*----+----* 4400
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3596 TGCTGCTAAAACAGCCTGTGCAGTTGGGGTTTTGCAGGCCAGGACAGAGG 3645

          4401 ----+----*----+----*----+----*----+----*----+----* 4450
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3646 CCTCTTTCCCACCTCCCACAGCGTTTTCACACGGAGTCCAAGGCCCTGCC 3695

          4451 ----+----*----+----*----+----*----+----*----+----* 4500
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3696 ACCCCTTCCTTGACCCCAAGCTCCTTGGGGCGGCAGGCCCTTCACCCTCG 3745

          4501 ----+----*----+----*----+----*----+----*----+----* 4550
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3746 CCCCCCTCCCCTTTAGCTCTGTGATGCCTGCCTGTTACAGATCACTTCTC 3795

          4551 ----+----*----+----*----+----*----+----*----+----* 4600
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3796 CGTCGGTCTCTGAGAAAGCACCTGCTCCTTAAGTCTTCCTGCAACAAGTG 3845

          4601 ----+----*----+----*----+----*----+----*----+----* 4650
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3846 CCACTGTTTTTAGGAACCTGGGCGTCCACATAGACATCTCACCAGCACTG 3895

          4651 ----+----*----+----*----+----*----+----*----+----* 4700
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3896 AAACCTCACAAGTCCTCTCAGCTTTGCCTTTGGATGCCCTCTCTTGGGAA 3945

          4701 ----+----*----+----*----+----*----+----*----+----* 4750
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3946 TGTCCCCAGTCCTGGTCAGCTGTCTCTCTCCTTTGCAATTTTGTCTGCCT 3995

          4751 ----+----*----+----*----+----*----+----*----+----* 4800
msh04335  2797 .................................................. 2797
                                                                 
ha00442   3996 CCCCTCAGCCTAAAAGTGTGCAGAACCCTCAATTCTGTTAAGTCACCCTG 4045

          4801 ----+----*----+----*----+----*----+----*----+----* 4850
msh04335  2797 .................................................. 2797
                                                                 
ha00442   4046 TGGAGTTCCTGTCTTCTGTTTTCCCCAGGCAGGGTGCCTGAGCTGTATCC 4095

          4851 ----+----*----+----*----+----*----+----*----+----* 4900
msh04335  2797 .................................................. 2797
                                                                 
ha00442   4096 CCCAGCACACCCACTCCCGCAGCCCTCCAGTGTGGCTGCAGGCGGTGGTG 4145

          4901 ----+----*----+----*----+----*----+----*----+----* 4950
msh04335  2797 .................................................. 2797
                                                                 
ha00442   4146 CAGCCTTCCAGACTGCTGCCCAGTTGCCTGATGTCAGAGCCCCTCCACAC 4195

          4951 ----+----*----+----*----+----*----+----*----+----* 5000
msh04335  2797 .................................................A 2797
                                                                 
ha00442   4196 ATGAGCCTGCTCCCTACTGCCAACACCGTGGCCCAGACAGAGACGCTTTC 4245

          5001 ----+----*----+----*----+----*----+----*----+----* 5050
msh04335  2798 TGGGAAAGACTTACCTG................................. 2814
                | | ||||  ||||||                                 
ha00442   4246 CGAGGAAGAGGTACCTGTGAGGCGCAGGACTTGCAGACTGGCCAGGGGCT 4295

          5051 ----+----*----+----*----+----*----+----*----+----* 5100
msh04335  2815 .................................................. 2815
                                                                 
ha00442   4296 GCAGGGCCTCTCGGCTGATGGTGCCCAGCTGGTTCCTGCTGAGGTCCAGC 4345

          5101 ----+----*----+----*----+----*----+----*----+----* 5150
msh04335  2815 .................................................. 2815
                                                                 
ha00442   4346 AGTGCTAGGGAGGACAGCCCCGCTAGAGCCTGGTCCTCCAGCAGCTCAAT 4395

          5151 ----+----*----+----*----+----*----+----*----+----* 5200
msh04335  2815 .................................................. 2815
                                                                 
ha00442   4396 GCTGTTTTCTTGCAGGTGAAGCTCCTGCAGTCGCTGAAGTAAGGACAGCA 4445

          5201 ----+----*----+----*----+----*----+----*----+----* 5250
msh04335  2815 .................................................. 2815
                                                                 
ha00442   4446 GATCGTGAGGAAAAAGGGCGCCGAGGTTGGGGGCATGTCTCTCTTCTTAC 4495

          5251 ----+----*----+----*----+----*----+----*----+----* 5300
msh04335  2815 .................................................. 2815
                                                                 
ha00442   4496 CAAGCTAGACTGGGTTGCCTTTTCTAACTATTCCAGCCCTACAGGGCGAG 4545

          5301 ----+----*----+----*----+----*----+----*----+----* 5350
msh04335  2815 .................................................. 2815
                                                                 
ha00442   4546 GGGCCATAATGGAGTATCCCGCCCCTTTAGACCCCAGGCGCTCACCGGCA 4595

          5351 ----+----*----+----*----+----*----+----*----+----* 5400
msh04335  2815 .................................................. 2815
                                                                 
ha00442   4596 GGTGCAAGAAGGTGAAATCCAGCAGCCGCGCCAGCTGGTTGCCCGCCAGG 4645

          5401 ----+----*----+----*----+----*----+----*----+----* 5450
msh04335  2815 .................................................. 2815
                                                                 
ha00442   4646 TAGAGCACGCGCAGCTGGGCCAGGCCTACGAAGGCGCCGCTGCGCAAGCC 4695

          5451 ----+----*----+----*----+----*----+----*----+----* 5500
msh04335  2815 .................................................. 2815
                                                                 
ha00442   4696 GCGCAGCCGGTTGCTAGTGAGCGCCAGCTCCAGCAGGCGCGGCTGCGCGC 4745

          5501 ----+----*----+----*----+----*----+----*----+----* 5550
msh04335  2815 .................................................. 2815
                                                                 
ha00442   4746 GGAAGGCGCCGGCCTCCAGGGCGCGCAGGCTGTTGTTGTGCAGGTAGAGC 4795

          5551 ----+----*----+----*----+----*----+----*----+----* 5600
msh04335  2815 .................................................. 2815
                                                                 
ha00442   4796 CGGCGCAGAGCGGCGAGTGGCGCCAGGGCTCCCGGCTCTAGGCGGGCGAT 4845

          5601 ----+----*----+----*----+----*----+----*----+----* 5650
msh04335  2815 .................................................. 2815
                                                                 
ha00442   4846 GTTGTTGTCCTGCAGGAACAGTGTCTGCAGGCCGGGGAAAGAGGAGGCGC 4895

          5651 ----+----*----+----*----+----*----+----*----+----* 5700
msh04335  2815 .................................................. 2815
                                                                 
ha00442   4896 TTACCCCGCTGCGGGGGTCTTCCTCTCCCTGGGGGCACCCCGTCCTCCCG 4945

          5701 ----+----*----+----*----+----*----+----*----+----* 5750
msh04335  2815 .................................................. 2815
                                                                 
ha00442   4946 CAGCTCCACACGGTGCCCACCTGCGTCCCTGGCGGGATTCCCAGCGGGAC 4995

          5751 ----+----*----+----*----+----*----+----*----+----* 5800
msh04335  2815 .................................................. 2815
                                                                 
ha00442   4996 GACGCGCAACCGCAGGGCGCCACACTCCACCGTGGCGCTGTAGCAGCGGC 5045

          5801 ----+----*----+----*----+----*----+----*----+----* 5850
msh04335  2815 .................................................. 2815
                                                                 
ha00442   5046 AGGCTGCTGGGCAGCCGGCGGCGCGGAGCGGCAGTAGTAGCAGCAGCAGC 5095

          5851 ----+----*----+----*----+----*----+----*----+----* 5900
msh04335  2815 .................................................. 2815
                                                                 
ha00442   5096 GGCAGCAGTTCGGGGGCCCTCAGGGCCATCTCCCGAGGCCCGGTTCCTCA 5145

          5901 ----+----*----+----*----+----*----+----*----+----* 5950
msh04335  2815 .................................................. 2815
                                                                 
ha00442   5146 CCGGCCCTTCCGCGGTTCAGCCGCAGACGCGTGCCCTCCTGAAACACAGG 5195

          5951 ----+----*----+----*----+----*----+----*----+----* 6000
msh04335  2815 .................................................. 2815
                                                                 
ha00442   5196 TTGGCAGGCCAGTCTCGGCAGTCGAGAGCCAGCCAATAGATGGAATGGAG 5245

          6001 ----+----*----+----*----+----*----+----*----+----* 6050
msh04335  2815 ...................................CATTTCAAAAAAAAA 2829
                                                     ||||| |||  |
ha00442   5246 GCCTGCACCTGCGTCTAACTTTTGACACTATAAATAGGTTCAAGAAACTA 5295

          6051 ----+----*----+----*----+--- 6078
msh04335  2830 AAAAAAAAAC.................. 2839
               | ||||                      
ha00442   5296 ATAAAACGTTCTGGTTTTCTCCTTTGAC 5323