Comparison of KIAA cDNA sequences between mouse and human (FLJ00419)
<<Original sequence data>>
mouse mFLJ00419 (msh04045) length: 2874 bp, CDS: 1 - 2190
human (sj09483) length: 4662 bp, CDS: 311 - 1000
In this page, the longest coding region predicted by GeneMark
was assigned as CDS for each of mouse and human KIAA cDNAs.
They were colored in green. When the CDS positions were not identical
on the aligned sequences between mouse and human cDNAs, mouse cDNA
sequence was translated based on the human CDS information.
The amino acid sequence produced here may not be identical to the
protein sequence deduced (see Description).
<<Aligned sequence information>>
----------------------------------------------------------
region #match #mismatch %diff
----------------------------------------------------------
DNA
5'UTR: 3 - 318 128 167 56.6
CDS: 319 - 1024 543 143 20.8
3'UTR: 1025 - 4766 997 825 45.3
amino acid
CDS: 319 - 1024 188 42 18.3
----------------------------------------------------------
<<Alignment>>
1 ----+----*----+----*----+----*----+----*----+----* 50
msh04045 1 CTCAGAGGCCAGGTTAAAGGAAACTGCACGTGGGGAATGAG.......CT 43
| | ||| | | | | || | ||| | | |
sj09483 1 ..CCACGCCCAACTAATTTTGTATTTTTAGTAGAGAAGGGGTTTCTCCAT 48
51 ----+----*----+----*----+----*----+----*----+----* 100
msh04045 44 GTAGGTTTATCCACCCTGGAGTGAATGACAAAGGCAACTACTCCCTCAT. 92
|| ||| | | || | |||| | | | || | |
sj09483 49 GTTGGTCAGGCTGCTCTCAAACTCCTGACCTCAGGTGATCCACCTGCCTC 98
101 ----+----*----+----*----+----*----+----*----+----* 150
msh04045 93 ...CACCAAAGCGGAACCTTTTCCACCCAACGGTGCCCCGCCTCTTGGAC 139
| || | | | || || || | ||| | | | ||| |
sj09483 99 GGCCTCCCACGGTGCTGGGATTACAGGCA..TGAGCCACCACACCTGGCC 146
151 ----+----*----+----*----+----*----+----*----+----* 200
msh04045 140 CTCACCCACTGATGCCTGCCAACCCTTGGGGTGGGCCAGTGGTTGATGAA 189
||||| || | || || | | | | || |
sj09483 147 CTCACTTCCTATTTTCTTGAGTATTTT....TTATCAAAAAGGCTATTGA 192
201 ----+----*----+----*----+----*----+----*----+----* 250
msh04045 190 ATTTTGCCTCCACCCCCTCCAGAGCCCCCAACAGAGAGC...GCCTGGGA 236
||||| | || | | | || ||| | | ||
sj09483 193 ATTTTTGTTAGACATTTTTATCATCTGTGAATAGAACCCTTTGACTTCTG 242
251 ----+----*----+----*----+----*----+----*----+----* 300
msh04045 237 ACGTGGACTCCGACAT......GCAAAAGAGGTTTTAA..AAAAAGCAAC 278
| || || || | || || | ||| | ||||
sj09483 243 GCCTGCTCTTAGATGTAGTTTGTGAACGGATTTCCTAACCTTGAGCCAAC 292
301 ----+----*----+----*----+----*----+----*----+----* 350
A R L * R K K V H S N
msh04045 279 CATTCGGAAAGAGCAGGAGCCCGACTTTGAAGAAAAAAGGTTCACAGTAA 328
| | || | | ||| ||| | | | | |
sj09483 293 CTTGCGCTCCTGGAGTAAACCCCACTGCGTCACGGTCTGTTACTTTCTGT 342
T P L R H G L L L S V
351 ----+----*----+----*----+----*----+----*----+----* 400
H K T T G S L T R R M V F R
msh04045 329 CCATTGGTGAAGACGACCGGGAGTTTGACAAGGAGAATGAAGTCTTCCGA 378
|| | || | | || | | | | || || | |
sj09483 343 CCCT.....AATGTTTCGTGTGGTCTTTTTACGCCAGTG..CTCCTAAGT 385
P N V S C G L F T P V L L S
401 ----+----*----+----*----+----*----+----*----+----* 450
D W N S R V P R D V R L E P
msh04045 379 GATTGGAATTCTCGAGTCCCGAGAGATGTCAGAGACACAACACTTGAGCC 428
||| || |||| | | |||| ||| |||||
sj09483 386 GATGAGAGTTCTTTTTCATTGGCCCTTTTCAG.........ACTCGAGCC 426
D E S S F S L A L F R L E P
451 ----+----*----+----*----+----*----+----*----+----* 500
Y A D P Y Y D Y E I E R F W R G G
msh04045 429 TTATGCAGACCCTTATTATGACTATGAGATAGAACGGTTTTGGCGTGGTG 478
||| ||||||||||||||||||||||| || || |||||||||||||| |
sj09483 427 TTACGCAGACCCTTATTATGACTATGAAATTGAGCGGTTTTGGCGTGGCG 476
Y A D P Y Y D Y E I E R F W R G G
501 ----+----*----+----*----+----*----+----*----+----* 550
Q Y E N F R V Q Y T E A E P Y H
msh04045 479 GACAGTACGAGAATTTCAGGGTGCAGTATACAGAAGCAGAACCGTATCAT 528
||||||| ||||||||||||||||||||||||||| |||| |||||||||
sj09483 477 GACAGTATGAGAATTTCAGGGTGCAGTATACAGAAACAGAGCCGTATCAT 526
Q Y E N F R V Q Y T E T E P Y H
551 ----+----*----+----*----+----*----+----*----+----* 600
N Y R E R E R E R E R E N R Q R E
msh04045 529 AACTATCGCGAACGAGAGAGGGAACGAGAGCGAGAAAACAGACAACGAGA 578
|| || || ||| | ||| |||| |||||| |||| |||||||| || ||
sj09483 527 AATTACCGAGAAAGGGAGCGGGAGCGAGAGAGAGAGAACAGACAGCGCGA 576
N Y R E R E R E R E R E N R Q R E
601 ----+----*----+----*----+----*----+----*----+----* 650
R E R E R E R D R E R E R R Q R E
msh04045 579 ACGCGAGCGGGAACGAGAGCGTGACCGAGAGCGGGAGCGCAGGCAGAGAG 628
||||||||||| || ||||| |||||||||||||||||| ||||||| |
sj09483 577 GCGCGAGCGGGAGCGGGAGCGGGACCGAGAGCGGGAGCGCCGGCAGAGGG 626
R E R E R E R D R E R E R R Q R E
651 ----+----*----+----*----+----*----+----*----+----* 700
R E R E R E R E R D K E R Q R R
msh04045 629 AGCGGGAGCGAGAACGGGAACGAGAGCGGGACAAGGAGCGGCAGCGGAGG 678
|||| |||||||| ||||| || ||||| |||||||||||||||||||||
sj09483 627 AGCGCGAGCGAGAGCGGGAGCGCGAGCGCGACAAGGAGCGGCAGCGGAGG 676
R E R E R E R E R D K E R Q R R
701 ----+----*----+----*----+----*----+----*----+----* 750
K E E W E R E R A K R D E K D R Q
msh04045 679 AAAGAGGAGTGGGAGAGAGAGAGAGCCAAGCGAGACGAGAAGGACCGGCA 728
|| |||||||||||| | ||| |||||||||| |||||||||||||||||
sj09483 677 AAGGAGGAGTGGGAGCGTGAGCGAGCCAAGCGGGACGAGAAGGACCGGCA 726
K E E W E R E R A K R D E K D R Q
751 ----+----*----+----*----+----*----+----*----+----* 800
H R D R D R D K D R E K D K E K P
msh04045 729 ACACCGAGACCGAGACAGGGACAAGGACCGGGAGAAGGACAAGGAGAAGC 778
||||| ||||| ||| |||| ||||| ||||||||||| |||| |||||
sj09483 727 GCACCGTGACCGCGACCGGGAGAAGGAGCGGGAGAAGGAGAAGGGGAAGC 776
H R D R D R E K E R E K E K G K P
801 ----+----*----+----*----+----*----+----*----+----* 850
K P R S P Q P P S R Q A E P P K
msh04045 779 CGAAGCCCAGGTCCCCACAGCCACCGAGCCGTCAAGCTGAACCACCAAAG 828
| |||||| | ||||| ||||| || ||||| |||||||| |||||||||
sj09483 777 CCAAGCCCCGCTCCCCGCAGCCGCCAAGCCGCCAAGCTGAGCCACCAAAG 826
K P R S P Q P P S R Q A E P P K
851 ----+----*----+----*----+----*----+----*----+----* 900
K E S T S V G P Q V K R A D E W K
msh04045 829 AAGGAGAGCACCTCTGTGGGGCCCCAGGTGAAGCGAGCCGATGAGTGGAA 878
|||||| || | |||||| ||||||||| |||| |||||||||||
sj09483 827 AAGGAGGCTGCCACCACGGGGCCGCAGGTGAAGAGAGCAGATGAGTGGAA 876
K E A A T T G P Q V K R A D E W K
901 ----+----*----+----*----+----*----+----*----+----* 950
D P W R R S K S P K K K L G V S V
msh04045 879 GGACCCCTGGCGCCGATCCAAGTCTCCCAAGAAGAAGCTTGGCGTGTCCG 928
|||||| ||||||||||||||||||||||||||||| || || ||||| |
sj09483 877 GGACCCTTGGCGCCGATCCAAGTCTCCCAAGAAGAAACTCGGGGTGTCGG 926
D P W R R S K S P K K K L G V S V
951 ----+----*----+----*----+----*----+----*----+----* 1000
S P S R A R R R R K T S A S S A
msh04045 929 TCTCCCCAAGCCGGGCACGAAGACGTCGCAAAACCTCCGCCTCCTCAGCC 978
||||||| |||||||| ||||| ||||| ||||| || ||||| ||||||
sj09483 927 TCTCCCCGAGCCGGGCTCGAAGGCGTCGGAAAACATCAGCCTCGTCAGCC 976
S P S R A R R R R K T S A S S A
1001 ----+----*----+----*----+----*----+----*----+----* 1050
S A S N S -
msh04045 979 TCTGCTTCCAATTCCT.................................. 994
||||| || |||||||
sj09483 977 TCTGCCTCTAATTCCTCCAGGTAAGGAGGGCTCGTGGGACGGCTGGGGTG 1026
S A S N S S R *
1051 ----+----*----+----*----+----*----+----*----+----* 1100
msh04045 995 .................................................. 995
sj09483 1027 TCAGCGCCTTGGAGCCGTCAGCTGACACCATGTACCTCACTGGGTCAGGT 1076
1101 ----+----*----+----*----+----*----+----*----+----* 1150
msh04045 995 .................................................. 995
sj09483 1077 GGGGAACACCCCAGCCCCACTGTTTGCTGTGGCGTCGTTACCTGCAGACC 1126
1151 ----+----*----+----*----+----*----+----*----+----* 1200
msh04045 995 .................................................. 995
sj09483 1127 AGTCAGTGGGACTAACCCGGCGTTTATACCTTCAGCAAAGAGCATCAATG 1176
1201 ----+----*----+----*----+----*----+----*----+----* 1250
msh04045 995 .................................................. 995
sj09483 1177 CCAAGTAGGACTGACGCAGTGACCCCAAATGGGGCACAGACCCCGGCGAC 1226
1251 ----+----*----+----*----+----*----+----*----+----* 1300
msh04045 995 .................................................. 995
sj09483 1227 TGAGCCTGACTGCTCCCAGGGAGTCACAGGCCACACTGGAGGGAGGGGCA 1276
1301 ----+----*----+----*----+----*----+----*----+----* 1350
msh04045 995 .................................................. 995
sj09483 1277 CCTGGATGCGGGAGGACGCACAGACCTGGGGCCCAGTGAGTCCATCTGTT 1326
1351 ----+----*----+----*----+----*----+----*----+----* 1400
msh04045 995 .................................................. 995
sj09483 1327 CCTCCAGACTGGACCTGAAACTGTTGCCCCTCCACCTACGGTCCTGGTCT 1376
1401 ----+----*----+----*----+----*----+----*----+----* 1450
msh04045 995 .................................................. 995
sj09483 1377 CAGCACACAGGAGCCCGGCTCCCGAGTGAGGGATGATGGAAAGCAGGGGG 1426
1451 ----+----*----+----*----+----*----+----*----+----* 1500
msh04045 995 .................................................. 995
sj09483 1427 CCGGGGTAGACCCCATCATGCTCGGCAGGAACAGGAGGTGTGGGTGGGAG 1476
1501 ----+----*----+----*----+----*----+----*----+----* 1550
msh04045 995 .................................................. 995
sj09483 1477 GCCAGGCTTCACTGAAAGTGGATGCAGATGAACAGATAGACACACACACG 1526
1551 ----+----*----+----*----+----*----+----*----+----* 1600
msh04045 995 .................................................. 995
sj09483 1527 GACCCACGTGAGCTGGGTCTGCCCACTCAGGCAGCGCCACCCGGTAACAG 1576
1601 ----+----*----+----*----+----*----+----*----+----* 1650
msh04045 995 .................................................. 995
sj09483 1577 CAGGCACACCGCACGCCCAGGTCTTGATTTCTAAATGCCGTTCTGCACCA 1626
1651 ----+----*----+----*----+----*----+----*----+----* 1700
msh04045 995 .................................................. 995
sj09483 1627 AGGAGGGATGGCACTGAAGAGTGTCTGGGGGAGGCTGTATGCGTCTGTGC 1676
1701 ----+----*----+----*----+----*----+----*----+----* 1750
msh04045 995 .................................................. 995
sj09483 1677 GCGCGTCTGCAGCTGTGCGCGCGTGCGCAGCTGTGCGCTTGTGTGTAGCT 1726
1751 ----+----*----+----*----+----*----+----*----+----* 1800
msh04045 995 .................................................. 995
sj09483 1727 GTGCGTCTGTGGGTGTGTAGCTGTGCATGTGTGCGTCAGGGCGTGTGGGG 1776
1801 ----+----*----+----*----+----*----+----*----+----* 1850
msh04045 995 ..............................................CCAG 998
||||
sj09483 1777 CAGGGAGGGCCCTTCTCACTTCTCGCCACGCTCCGTCCCGCCCGCCCCAG 1826
1851 ----+----*----+----*----+----*----+----*----+----* 1900
msh04045 999 GTCATCGTCACGGTCTTCATCCTACTCTGGCTCTGGCTCGTCCCGCTCCC 1048
||| || || ||||| || |||||||||||||| ||||| ||||| || |
sj09483 1827 GTCGTCTTCGCGGTCATCGTCCTACTCTGGCTCCGGCTCCTCCCGGTCGC 1876
1901 ----+----*----+----*----+----*----+----*----+----* 1950
msh04045 1049 GCTCCCGCTCCTCCTCCTACAGCTCCTATTCTAGCCGCTCTTCCAGACAC 1098
| ||||| || || |||||||||||||| || ||||||||||||||||||
sj09483 1877 GATCCCGGTCTTCATCCTACAGCTCCTACTCCAGCCGCTCTTCCAGACAC 1926
1951 ----+----*----+----*----+----*----+----*----+----* 2000
msh04045 1099 AGCTCGTTCTCAGGCAGCCGATCC.......................... 1122
|||||||||||||| ||||| |||
sj09483 1927 AGCTCGTTCTCAGGAAGCCGGTCCAGATGCGTGCTGTCACTGAGGGCCAC 1976
2001 ----+----*----+----*----+----*----+----*----+----* 2050
msh04045 1123 .................................................. 1123
sj09483 1977 AGCCTGAGATCCTCGAGTTGAGGTACTCCAGTCCTCCGCAGACAGGCCGA 2026
2051 ----+----*----+----*----+----*----+----*----+----* 2100
msh04045 1123 .................................................. 1123
sj09483 2027 GGAAGGGGCCAGACCCAGCCCTGTCCTGTGGGTGTTTCTATGGGAGCTGT 2076
2101 ----+----*----+----*----+----*----+----*----+----* 2150
msh04045 1123 .................................................. 1123
sj09483 2077 GCTGCTGCCCCACTGCCAAGGAGCCTGTCTCCTCCTGTCCTGCACACACA 2126
2151 ----+----*----+----*----+----*----+----*----+----* 2200
msh04045 1123 .................................................. 1123
sj09483 2127 TGAACGTGACACTCGCCTCCCGGAGGACCCGCCAGTGGATGCTGACACCT 2176
2201 ----+----*----+----*----+----*----+----*----+----* 2250
msh04045 1123 .................................................. 1123
sj09483 2177 TCCACGCTCTCTGGTCTACTCTGGGCCTGTGTTTTTAGCAGATGACAGAA 2226
2251 ----+----*----+----*----+----*----+----*----+----* 2300
msh04045 1123 .................................................. 1123
sj09483 2227 CAGTCCAGAACTGAAGTTAAAACTGAGGCACATAAATGGAAATTCGTGGC 2276
2301 ----+----*----+----*----+----*----+----*----+----* 2350
msh04045 1123 .................................................. 1123
sj09483 2277 CTTCTCCATGGGTCTGGGTGGGTCCTCAGTGGGCTTGGGCTGGTGAAGAA 2326
2351 ----+----*----+----*----+----*----+----*----+----* 2400
msh04045 1123 ........................................AGGTCCCGGT 1132
||||||||||
sj09483 2327 ACACCCCCAGGCCCCTTCCGACACCTTTGTTCACTCCCCTAGGTCCCGGT 2376
2401 ----+----*----+----*----+----*----+----*----+----* 2450
msh04045 1133 CCTTCTCCTCGTCCCCATCCCCGTCTCCCACACCTTCCCCACACAGACCT 1182
||||||| |||||||| |||||||| || |||||||||||||| ||||||
sj09483 2377 CCTTCTCTTCGTCCCCGTCCCCGTCCCCAACACCTTCCCCACATAGACCT 2426
2451 ----+----*----+----*----+----*----+----*----+----* 2500
msh04045 1183 CCAGTCAGAACCAAGGGGGAGCCGGCCCCACCTCCTGGGAAAGCAGGG.. 1230
| ||||||||||||| ||||||||||| || || ||||||||||||
sj09483 2427 TCCATCAGAACCAAGGGAGAGCCGGCCCCGCCGCCCGGGAAAGCAGGGTG 2476
2501 ----+----*----+----*----+----*----+----*----+----* 2550
msh04045 1231 .................................................. 1231
sj09483 2477 AGTGCCCAGCCTGTGGGCAAGTCCTGGCCGGCCAGGCCTCCACAGGCTGC 2526
2551 ----+----*----+----*----+----*----+----*----+----* 2600
msh04045 1231 .................................................. 1231
sj09483 2527 AGCCTCCTCCCTCCGTCTCTATCTCTCATTTGTGTTTGGGACCAAAGAGG 2576
2601 ----+----*----+----*----+----*----+----*----+----* 2650
msh04045 1231 .................................................. 1231
sj09483 2577 TGAGGATGCCTCAGGGGGCTGGCCCCAGGGGGTGACTGGGCTGGGAGGCA 2626
2651 ----+----*----+----*----+----*----+----*----+----* 2700
msh04045 1231 .................................................. 1231
sj09483 2627 CTGGGCACAGCTCCTGTTCTCACGGGCCACCCTTACACAGCAGCACTCCC 2676
2701 ----+----*----+----*----+----*----+----*----+----* 2750
msh04045 1231 .................................................. 1231
sj09483 2677 TCGGGAACCCTGGGGACAGAGCACAGCCCTGGGGACACGGCAGCAGCCGG 2726
2751 ----+----*----+----*----+----*----+----*----+----* 2800
msh04045 1231 .................................................. 1231
sj09483 2727 GTGTTCTTAAGGGGTCTTCCTATTAGCCTGCTCTCCCCACTGCCTGGCGG 2776
2801 ----+----*----+----*----+----*----+----*----+----* 2850
msh04045 1231 .................................................. 1231
sj09483 2777 TGCCTGTAGCTCTTGCCTGTTAGAGGGGAGCCTGGAAGGGCTGCTGGGGG 2826
2851 ----+----*----+----*----+----*----+----*----+----* 2900
msh04045 1231 .................................................. 1231
sj09483 2827 CTTTGAAGCCGTTCCCAAGCACTCTGACACCGATGGGTGGGGAGCCGTGT 2876
2901 ----+----*----+----*----+----*----+----*----+----* 2950
msh04045 1231 .................................................. 1231
sj09483 2877 CCAGGCACGAGCAGCGTGCTCACCGAGCGTCACAGGCATGCAGTGTCGTT 2926
2951 ----+----*----+----*----+----*----+----*----+----* 3000
msh04045 1231 .................................................. 1231
sj09483 2927 CCCCGAGCTGTGGGTCCATTGAAAGGGGATGTAGGCCAGCGGGGCCCCGT 2976
3001 ----+----*----+----*----+----*----+----*----+----* 3050
msh04045 1231 ........................................GAGAAGTCAA 1240
|||||||||
sj09483 2977 CCACCAGCCCTGCCCTGCTCGAGCCTCCCTGTCTCACAGAGAGAAGTCAG 3026
3051 ----+----*----+----*----+----*----+----*----+----* 3100
msh04045 1241 TAAAGAAGCCAGCCCCTCCCCCAGCCCCACCACAGGCCACCAAAACTACT 1290
| |||||||| ||||| || |||||||||||||||||||||||||| |||
sj09483 3027 TGAAGAAGCCGGCCCCGCCTCCAGCCCCACCACAGGCCACCAAAACCACT 3076
3101 ----+----*----+----*----+----*----+----*----+----* 3150
msh04045 1291 GCTCCTGGTCCTGAGCCTGCCAAACCTGGAGATCTCCGAGAAGCCAGGAG 1340
||||||| || ||||| |||| || ||||| | || |||||||||||
sj09483 3077 GCTCCTGTCCCCGAGCCCACCAAGCCAGGAGACCCTCGGGAAGCCAGGAG 3126
3151 ----+----*----+----*----+----*----+----*----+----* 3200
msh04045 1341 AAAGGAGCGGCAAACCAGGA.CTCCCCCAAGGAGGCGGACGCTCAGCGGC 1389
|||||||||| | |||||| | ||||| |||||||||||||| ||||||
sj09483 3127 GAAGGAGCGGCCAGCCAGGACCCCCCCCCAGGAGGCGGACGCTAAGCGGC 3176
3201 ----+----*----+----*----+----*----+----*----+----* 3250
msh04045 1390 AGTGGTAGCGGCAGTGGTAGCAGCTACAGTGGCTCCAGTTCCCGATCCAG 1439
|| || || ||||||||||||||||| ||||| ||||| |||||||||||
sj09483 3177 AGCGGCAGTGGCAGTGGTAGCAGCTATAGTGGTTCCAGCTCCCGATCCAG 3226
3251 ----+----*----+----*----+----*----+----*----+----* 3300
msh04045 1440 GT.....CTCTGAGTGTGAGCAGCGTTTCCTCAGTGTCCAGCGCCACCTC 1484
|| | | | || || | || ||| | || || ||
sj09483 3227 GTCATCCCCATCACCCTGTGCCTCTGTTTCTCCCTCCCCGTCGGGGCCAG 3276
3301 ----+----*----+----*----+----*----+----*----+----* 3350
msh04045 1485 G.AGTAGCAGCTCAGTGCACAGTGTGGACTCAGATGACATGTATGCAGAC 1533
| ||| ||| || |||||||| | | || |
sj09483 3277 GAAGTCCCAG..AAGCAGCCAGTGTGGGTTGGGCTGTC............ 3312
3351 ----+----*----+----*----+----*----+----*----+----* 3400
msh04045 1534 CTGGCCAGTCCTGTGTCCTCAGCCAGCTCTCGATCCCCAACTCCTGCCCA 1583
| | ||| || | | ||| |||| | ||
sj09483 3313 ....TCCCACAGGTGGGCTGGGGCCCTTCTGGATCTGAGTCACC.CTGGG 3357
3401 ----+----*----+----*----+----*----+----*----+----* 3450
msh04045 1584 GACCAAGAAGGAGAGAGGGAAATCCAAGAAAGAAGACGGAGTGAGAGAGG 1633
| ||||| | || | || | | || | || | |||
sj09483 3358 GCTGTGGAAGGCTGCGGTTGAAGCTTTGACACAGGAGAAAATGGGCCAGG 3407
3451 ----+----*----+----*----+----*----+----*----+----* 3500
msh04045 1634 AAAAGCGGAGGCGGGACCCATCCGCGCAGCCGCCCAAGTCCTCTAAAGCT 1683
| | | | ||||| | | | || || || || ||
sj09483 3408 ACTCGTGATAGGAAGACCCCCTCCCCCCACCAAAAAAAGATTCACAAACT 3457
3501 ----+----*----+----*----+----*----+----*----+----* 3550
msh04045 1684 CCAGCGGGTGGGAAGGCCTCCCAGCAGGCAGCGGCGCCTCAGCCGGCGGT 1733
| || | ||| |||| | || ||||| ||| | |
sj09483 3458 C.........GGGGGCACTCAGGTCAGGAGGAGGTGCCTCTGCC..CTGC 3496
3551 ----+----*----+----*----+----*----+----*----+----* 3600
msh04045 1734 CCCCGGGCAGCCCCAACAGGGCTCCTTTGTTGCCCACAAGGAGATAAAGC 1783
| | |||| || || | | ||| | | | ||
sj09483 3497 TGACTTGATGCCC......AGCACCCTGAGAGAGCACCTGCACCTGGAGA 3540
3601 ----+----*----+----*----+----*----+----*----+----* 3650
msh04045 1784 TGACACTGCTGAACAAGGCGGCTGATAAAGGAAGCCGGAAGCGCTATGAG 1833
|| | || | | || | | || || | | || | |
sj09483 3541 GGAGCCGGC...AGCTTCCAGCCCAGCAGGGCAGAGGCTGGGCCTGCGTG 3587
3651 ----+----*----+----*----+----*----+----*----+----* 3700
msh04045 1834 CCATCAGACAAGGACCGGCAGAGCCCTCCTGCCAAGAAGGCCAACTTG.. 1881
| | ||| || || || |||| | || || |
sj09483 3588 ACCTATCACACCTGTCGAGGGAACCGGCCTGAGGGGGTGGGGAAGCCGAT 3637
3701 ----+----*----+----*----+----*----+----*----+----* 3750
msh04045 1882 ...................TCCCCAGACCGAGGTTCTCGAGACCGGAAAT 1912
| | || || | | | ||
sj09483 3638 AAAAACATCTGAGAAGAGAATACATGGAAAAGCTTTGTGGGCCAGGTGCG 3687
3751 ----+----*----+----*----+----*----+----*----+----* 3800
msh04045 1913 CAGGTGGAAGAATGGGCTCCCCAAAACCAGAGAGG.CAGAGAGGCCAGAA 1961
|| | | || | |||| | | | |||| || | | ||
sj09483 3688 GCGGCTCACGCCTGTGATCCCAGCACCGTGGGAGGCCAAGGCAGGAGGAT 3737
3801 ----+----*----+----*----+----*----+----*----+----* 3850
msh04045 1962 CGCTAAAGCTC....CTGCTGCCCCAGCGGACAGGAAGCGTCCACTGTCA 2007
||| ||| | || ||||| | | | ||
sj09483 3738 TGCTTGAGCCCAGGACTTGACGACCAGCCTGAGCAACATAGACCCCATCT 3787
3851 ----+----*----+----*----+----*----+----*----+----* 3900
msh04045 2008 CCCCAGTCTAAG...............................GGCTCCA 2026
|| ||| ||| | ||
sj09483 3788 CCACAGAAAAAGATTTTTTTTTTTTTTTTTTTTTTTTGAGACAGTTTCAT 3837
3901 ----+----*----+----*----+----*----+----*----+----* 3950
msh04045 2027 GCAAGGTCACCAGCGTGCCTGGCAAAGCCACAGATACTGCCACAGCAGGC 2076
| | | |||| || |||| | | | ||| || || | | |
sj09483 3838 TCTTGTTGCCCAGGCTGGAGTGCAATGGCGC.GATCTCGCTACCTCCGCC 3886
3951 ----+----*----+----*----+----*----+----*----+----* 4000
msh04045 2077 ACCAAGTCAGGGAAGGCCAGCACATTGTCACGGCGAGAGGAGCTCCTTAA 2126
|| | | || |||| | || | |||| | | |
sj09483 3887 TCCCGG..ATTCAACCTCAGCCCCCTGAGTAGCTGAGACTACAGGCGCAC 3934
4001 ----+----*----+----*----+----*----+----*----+----* 4050
msh04045 2127 ACAG...CTCAAAGCGGTTGAGGACGCCATCGCTCGCAAGCGGG.....C 2168
|| | | | ||| | | | | | ||| |
sj09483 3935 ACTGCCACGCCCAGCTAATTTTCTGTATTTTAGTAGAGATGGGGTTTCAC 3984
4051 ----+----*----+----*----+----*----+----*----+----* 4100
msh04045 2169 CAAGATCCCCGGGAAAGTGTAGTGGCCCAGCTCACTCCTGGAGTAGACTC 2218
|| | | ||| || || | || | ||| | | | || |
sj09483 3985 CATGTTGCCCAGGTTGGTCTCAAACTCCTG..AGCTCAGGCATTCCACCC 4032
4101 ----+----*----+----*----+----*----+----*----+----* 4150
msh04045 2219 TTCATGTTTTTATAAAGAGTAGGGTAAGCGCAGCCATTTTGGATTTTCCA 2268
| || | |||| | || | ||| || ||
sj09483 4033 ACCTTGGCCTCCCAAAGTGCTGG......GATTACATGCGTGAGCCGCCG 4076
4151 ----+----*----+----*----+----*----+----*----+----* 4200
msh04045 2269 GTCAATGTCTTATTTTGGCTGTGATTCTTTTTAAAAATTAAAAAAGAAAA 2318
| | || |||||| |||| | | | |
sj09483 4077 CACGCAGCCTAATTTTG.........TATTTTTAGTAGAGACTGGGTTTT 4117
4201 ----+----*----+----*----+----*----+----*----+----* 4250
msh04045 2319 AAAAAGTTTCTCAGCTGGAAAAGAAGCCACACACAAGATGAAGATGAGGC 2368
| | |||||| | || ||| | | | || ||| | | |
sj09483 4118 ACCACGTTTCTGATCTTGAACTCCTGAC.CTCAGGTGATCCATCCGCCTC 4166
4251 ----+----*----+----*----+----*----+----*----+----* 4300
msh04045 2369 TGAGTCCCAACCTCC.....CCACCAGACTGAACCAGCTTCTTCCAGAAT 2413
| |||||| | | || | ||| ||| || | ||||
sj09483 4167 GGCTTCCCAAAGTGCTGGGATTACAGGTGTGAGCCA.CTGCACCCAGCCC 4215
4301 ----+----*----+----*----+----*----+----*----+----* 4350
msh04045 2414 AG.AGTCTCCATGGACAGACGGACAGATCAGCACTGAACAGGGGACACCA 2462
|| | | | | | | | | | || | | || |||
sj09483 4216 AGAAATTTTTTTTAATTAGCTGGGTGTAGTGGTGTGTGCCTGTGATCCCA 4265
4351 ----+----*----+----*----+----*----+----*----+----* 4400
msh04045 2463 ACTCTGTGTAACTTAAGAGCTTCAGGCACGCAGGGGCTGGCCTCACCCTT 2512
|| || | | | | | | | | | | | | | |
sj09483 4266 GCTACTTGGGAGGTCAAGGTTGAATGAGCTGTGATCACGACATTGCATTC 4315
4401 ----+----*----+----*----+----*----+----*----+----* 4450
msh04045 2513 CTGCCTCCGTCCTCACTTCTCCCAGGTGACCTCCTGGGCTGCAGTTTTCA 2562
| |||| | | || ||| | | | | |||
sj09483 4316 CAGCCT.GGACAACAGAGATCCTGTCTCAAAACAAAAAAAAAGGATTTTT 4364
4451 ----+----*----+----*----+----*----+----*----+----* 4500
msh04045 2563 GCAGCTTCCTCTGGGGACAGGAAAGCCGAACACTTCTGGACTACAGGCAC 2612
|| || | | | ||||| || |
sj09483 4365 GCTATTTAGTTGTTTTAAAAGAAAG................TATTAAATC 4398
4501 ----+----*----+----*----+----*----+----*----+----* 4550
msh04045 2613 CATCCCTCCCTCCCTGGATCAGAAGTATATATATACTTGCCTAAAGAATA 2662
||| | | ||| | |||| | | | | | | | ||
sj09483 4399 AGTCCTTAGATTCCTTGCATAGAACTCTTTCATTTCCAGGCAGCAGGTCG 4448
4551 ----+----*----+----*----+----*----+----*----+----* 4600
msh04045 2663 TATATATATATATTCTTGCCTAAAGTCTGATTGGGAAACATTTCCTGTCT 2712
| ||||||| | | | || | ||| | | |
sj09483 4449 TTTATATATTTGTCACAGTTCTTTGTTT...........CTTTTGTTTGT 4487
4601 ----+----*----+----*----+----*----+----*----+----* 4650
msh04045 2713 TTTATTTTAAGCATCAAATTGTTTTAGTTGATTAAAAAGGAAAAAAACAG 2762
||| ||| | | || || || | || ||| ||
sj09483 4488 TTTGTTTCTGGAGAGACATGGTCTTGCTGTGTTGCCCAGGCTGGTCTCAA 4537
4651 ----+----*----+----*----+----*----+----*----+----* 4700
msh04045 2763 AAAAGACAAAAAAATAATAATAATAATAAAGGCCAGGGGTATTGTTGGGG 2812
| || | || | | | ||||
sj09483 4538 ACTCCTGGGCTCAAGTGATCCTCCCACCGTGGTCTCCCAAACTCGTGGGA 4587
4701 ----+----*----+----*----+----*----+----*----+----* 4750
msh04045 2813 TGTCTGTCCAATGTGGAGGGTCTTTTTTGAGCTATCTCCTAAAA....TA 2858
| | | | | | | | | || ||| | |
sj09483 4588 TTATAGGCATGAGCCACCACGCCTGGCCTAAATGTTTCTTAATAAGTCTG 4637
4751 ----+----*----+----*----+ 4775
msh04045 2859 AAATATTTTGATAAGC......... 2874
|||| |||| | | |
sj09483 4638 AAATGTTTTAAAGACCTGACTTTTG 4662