FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1696.ptfa, 675 aa
 vs ./tmplib.26680 library

1768342 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 10.4509+/-0.00844; mu= -7.8372+/- 0.557
 mean_var=443.2279+/-109.166, 0's: 0 Z-trim: 11  B-trim: 0 in 0/36
 Lambda= 0.0609

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1113  ( 1071 res)   mpm06042                  (1071)  278   39  0.0028


>>mKIAA1113  ( 1071 res)   mpm06042                       (1071 aa)
 initn: 284 init1: 201 opt: 278  Z-score: 151.1  bits: 39.0 E(): 0.0028
Smith-Waterman score: 309;  22.785% identity (25.472% ungapped) in 474 aa overlap (77-530:451-894)

         50        60        70        80        90       100      
mKIAA1 ADLKKQLHELQAKITALSEKQKRVVEQLRKNLIVKQEQPDKFQIQPLSQSENKLQTAQQQ
                                     :..: :  :   .:   :.. .... :: .
mKIAA1 FHCDPTFWAKNVVNLGNLVIESKPAPGYTPNVVVGQVPPGTNHI---SKTPGQINLAQLR
              430       440       450       460          470       

        110       120       130       140         150       160    
mKIAA1 PLQPLQQQQPQQPQQQQQQQQQHAQQSAAAPPSLTAS--QKTVTTASMITTKTLPLVLKA
        :: .:::     :..:: ::.. ::  :  :. ::.  :.   .: ..  .  : ....
mKIAA1 -LQHMQQQV--YAQKHQQLQQMRLQQPPAPIPTTTATTQQHPRQAAPQMLQQQPPRLISV
        480         490       500       510       520       530    

          170       180       190          200       210        220
mKIAA1 ATATMPASVVGQRPTIAMVTAINSQKA---VLSTDVQNTPVNLQTSSKVTGPG-AEAVQI
        :        :   .  :  : :. .       .  : . .. . . . ..:: :    .
mKIAA1 QTMQRGNMNCGAFQAHQMRLAQNAARIPGIPRHSAPQYSMMQPHLQRQHSNPGHAGPFPV
          540       550       560       570       580       590    

              230       240       250       260       270          
mKIAA1 VAKNTVTLQVQATPPQPIKVPQFIPPPRLTPRPNFLPQVRPKPVAQNNIPIAPAPPPML-
       :. ..    .. : :    . .    :  .:  . .  . :. .  .:.:  :  ::.  
mKIAA1 VSAHN---PINPTSPTTATMANANRGPT-SPSVTAIELI-PSVTNPENLPSLPDIPPIQL
             600       610        620        630       640         

           280       290       300       310       320       330   
mKIAA1 ------AAPQLIQRPVMLTKFTPTTLPTSQNSIHPVRVVNGQTATIAKTFPMAQLTSIVI
             .  .:..: .  ... :    : . :  :  .  :...   .  :.   ..   
mKIAA1 EDAGSSSLDNLLSRYISGSHLPPQPTSTMNPSPGPSALSPGSSGLSNSHTPVRPPSTSST
     650       660       670       680       690       700         

           340       350       360       370       380       390   
mKIAA1 ATPGTRLAGPQTVQLSKPSLEKQLNPTQKQRKNKQGLVTHDHLEEIQSKRQERKRRTTAN
       .. :.  .. .:.. :  :....      : : ::   :.   ::: :     :.. : .
mKIAA1 GSRGSCGSSGRTAEKSAHSFKSD------QVKVKQEPGTE---EEICSFSGAVKQEKTED
     710       720       730             740          750       760

           400        410       420       430       440       450  
mKIAA1 PVYSGAVFE-PERKKSAVTYLNSTMHPGTRKRGRPPKYNAVLGFGALTPTSPPSSHPDSP
          :. ..  ::  .: .  :....:  .       . ... :.   . : : ..  .: 
mKIAA1 GRRSACMLSSPE--SSLTPPLSTNLHLES-------ELDTLTGLENHVKTEP-TDISESC
              770         780              790       800        810

            460       470             480       490       500      
mKIAA1 ENEKTETTFTFPAPVQPVSLPSP------TSTDGDIHEDFCSVCRKSGQLLMCDTCSRVY
       ..    .  .  .:.. .   :       .: : : .::.:.::...:.:: :. : .:.
mKIAA1 KQSGLSNLVNGKSPIRNLMHRSARIGGDGNSKDDDPNEDWCAVCQNGGDLLCCEKCPKVF
              820       830       840       850       860       870

        510       520       530       540       550       560      
mKIAA1 HLDCLEPPLKTIPKGMWICPRCQDQMLKKEEAIPWPGTLAIVHSYIAYKAAKEEEKQKLL
       :: :  : : ..:.: :::  :.:                                    
mKIAA1 HLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDNMQHSKKGKTAQGLSPVDQRKCERL
              880       890       900       910       920       930




675 residues in 1 query   sequences
1768342 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:51:07 2006 done: Mon Mar 27 10:51:08 2006
 Scan time:  0.840 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]