FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0838.ptfa, 609 aa vs ./tmplib.26680 library 1768408 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.9383+/-0.0064; mu= 1.3650+/- 0.427 mean_var=203.0076+/-47.869, 0's: 0 Z-trim: 2 B-trim: 2 in 1/35 Lambda= 0.0900 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4146 ( 616 res) msj06308 ( 616) 2282 309 8.3e-85 >>mKIAA4146 ( 616 res) msj06308 (616 aa) initn: 2246 init1: 2246 opt: 2282 Z-score: 1614.9 bits: 308.9 E(): 8.3e-85 Smith-Waterman score: 2282; 63.235% identity (64.419% ungapped) in 544 aa overlap (70-606:4-544) 40 50 60 70 80 90 mKIAA0 LCRRPRGGSRPTAGLVAAARLHPWWGGGGRAKGPG---AGGLSSSPSEILQELGKGGTPP : ::. :::. : . . . :...:. mKIAA4 TSGAPGPSGWRAGGMRSMRA-LQNALSRAGS-- 10 20 30 100 110 120 130 140 150 mKIAA0 QQQQQQQQQPGASPPAAPGPKDSPGETDA--FGNSEGKEMVAAGDNKIKQGLLPSLEDLL . .. .:. .: . : . ::. : :. .... . . ..:.:: : ::: mKIAA4 HGRRGGWGHPSRGPLLGRGVRYYLGEAAAQGRGTPHSHQPQHSDHDASHSGMLPRLGDLL 40 50 60 70 80 90 160 170 180 190 200 210 mKIAA0 FYTIAEGQEKIPVHKFITALKSTGLRTSDPRLKECMDMLRLTLQTTSDGVMLDKDLFKKC :::::::::.::.::: ::::.:::.::::::..::. .. .: .:.: .::..::.:: mKIAA4 FYTIAEGQERIPIHKFTTALKATGLQTSDPRLQDCMSKMQRMVQESSSGGLLDRELFQKC 100 110 120 130 140 150 220 230 240 250 260 270 mKIAA0 VQSNIVLLTQAFRRKFVIPDFMSFTSHIDELYESAKKQSGGKVADYIPQLAKFSPDLWGV :.:::::::::::.::::::: ::.:.:...:.::. .::::: :::.::: .:::::: mKIAA4 VSSNIVLLTQAFRKKFVIPDFEEFTGHVDRIFEDAKEPTGGKVAAYIPHLAKSNPDLWGV 160 170 180 190 200 210 280 290 300 310 320 330 mKIAA0 SVCTVDGQRHSIGDTKVPFCLQSCVKPLKYAIAVNDLGTEYVHRYVGKEPSGLRFNKLFL :.:::::::::.: ::.::::::::::: :::.:. :::.:::..:::::::::.::: : mKIAA4 SLCTVDGQRHSVGHTKIPFCLQSCVKPLTYAISVSTLGTDYVHKFVGKEPSGLRYNKLSL 220 230 240 250 260 270 340 350 360 370 380 390 mKIAA0 NEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATFQSERE ::. :::::::::::::.::::. :.:::::.:.:.::::::::..::::::::::.: mKIAA4 NEEGIPHNPMVNAGAIVVSSLIKMDCNKAEKFDFVLQYLNKMAGNEFMGFSNATFQSEKE 280 290 300 310 320 330 400 410 420 430 440 450 mKIAA0 SGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPIT .::::.:::::::::::::.:.::.. ::.::::::.::::::.:::::::::::.:::: mKIAA4 TGDRNYAIGYYLKEKKCFPKGVDMMAALDLYFQLCSVEVTCESGSVMAATLANGGICPIT 340 350 360 370 380 390 460 470 480 490 500 510 mKIAA0 GERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSP :: ::: ::::::::::::::::::::::::::::::::.:.:.::::::::::::: :: mKIAA4 GESVLSAEAVRNTLSLMHSCGMYDFSGQFAFHVGLPAKSAVSGAILLVVPNVMGMMCLSP 400 410 420 430 440 450 520 530 540 550 560 570 mKIAA0 PLDKMGNSVKGIHFCHDLVSLCNFHNYDNLRHFAKKLDPRREGGDQRH-SFGPLDYESLQ ::::.::: .::.::. :::: :::::::::: :.:::::::::. :. . : . . . mKIAA4 PLDKLGNSQRGINFCQKLVSLFNFHNYDNLRHCARKLDPRREGGEVRNKTVVNLLFAAYS 460 470 480 490 500 510 580 590 600 mKIAA0 QEL-ALKDTVWKKVSPESSDDTSTTVVYRMESLGERS .. ::. . . .. :..: : :... . :. mKIAA4 GDVSALRRFALSAMDMEQKDYDSRTALHVAAAEGHIEVVKFLIEACKVNPFVKDRWGNIP 520 530 540 550 560 570 mKIAA4 LDDAVQFNHLEVVKLLQDYHDSYLLSETQAEAAAETLSKENLESMV 580 590 600 610 609 residues in 1 query sequences 1768408 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:29:59 2006 done: Mon Mar 27 10:30:00 2006 Scan time: 0.740 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]