FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1635.ptfa, 399 aa vs ./tmplib.26680 library 1768618 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.1845+/-0.00561; mu= -2.8646+/- 0.364 mean_var=408.7883+/-102.408, 0's: 0 Z-trim: 16 B-trim: 0 in 0/36 Lambda= 0.0634 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0192 ( 1146 res) msp04171 (1146) 496 59 1.3e-09 mFLJ00386 ( 769 res) mbe05021 ( 769) 333 44 3.3e-05 mKIAA0827 ( 1033 res) mbg05617 (1033) 281 40 0.001 >>mKIAA0192 ( 1146 res) msp04171 (1146 aa) initn: 529 init1: 331 opt: 496 Z-score: 264.7 bits: 59.4 E(): 1.3e-09 Smith-Waterman score: 622; 34.204% identity (41.261% ungapped) in 421 aa overlap (15-387:741-1137) 10 20 30 40 mKIAA1 KSAELSDQGKATADEEKKTKGRKRKTKSSSRIDEYQQTNLYRVP ..:.:::.:: .. ... ..: . : mKIAA0 APALLEPEKKAPEPPKTDKPGAAPPSTEERKKKSTKGKKR-SQPATKNEDYGMGP-GRSG 720 730 740 750 760 50 60 70 80 90 100 mKIAA1 PNYSPMSSQMTHHPQPALWGYNLVSQPQQPSFFLQNPSLNPGGSRLDPAGSFVPTNTKQA : . .. :: .:. .. : . .. ... :: : :: :.:: . :. . mKIAA0 PYGVTVPPDLLHHANPGSISH-LSYRQSSMGLYTQNQPLPAGGPRVDP---YRPV--RLP 770 780 790 800 810 820 110 120 130 140 150 160 mKIAA1 LSNMLQRRSGAMLQPPSLHAVTSQQQLLQMKLLQQQQQQQQQQQQQQRLLRQAQTRPFQQ .... : . . : .. .: . . ..: . .::: : ::: .: :.. .: mKIAA0 MQKLPTRPTYPGVLPTTMSTVMGLEPS-SYKT-SVYRQQQPTVPQGQRLRQQLQAKIQSQ 830 840 850 860 870 880 170 180 190 200 210 220 mKIAA1 GQPGDQAALFTAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQQAAQQQPGGVVLSP :. :.... : :: . ::: .: ::: : ... ::: . :.:... : mKIAA0 GMLGQSSV---HQMTPSSSY----GLQTSQ----GYTSYVSHVGLQQ--HTGPAGTMVPP 890 900 910 920 230 240 250 260 270 280 mKIAA1 SYNSRAYPAAHSS--PALMERLRQLQQQPSGYVQQQASPYLQPVAGSQRLNHQALQQSPL ::.:. : ..: : :.:.. :.:::.:::::.::: : . ....::..::.:::.:. mKIAA0 SYSSQPYQSTHPSTNPTLVDPTRHLQQRPSGYVHQQAPTYGHGLTSTQRFSHQTLQQTPM 930 940 950 960 970 980 290 300 310 mKIAA1 VGG-------GIDA-----VLTPAHPNLPSVPLPQDPMRPRQQQ---------------V .: :..: . : . . . :. .. .::: . mKIAA0 MGTMTPLSAQGVQAGVRSTSILPEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHI 990 1000 1010 1020 1030 1040 320 330 340 350 mKIAA1 RQQQRLLQM------------------QQPQQAPQPQQPSQTQSQALGLQAMQPQ-QPLF ::::. :: :: :: : ::: : :.:: : ::: :: : mKIAA0 RQQQQQQQMLRQQQQQQQQQQQQQQQQQQQQQQQQQQQPHQQQQQAAPPQP-QPQSQPQF 1050 1060 1070 1080 1090 1100 360 370 380 390 mKIAA1 PRQGLQQTQQQQQTAALVRQLQKQLSSNQPQQGVTPCAHPSHF :::::::::::::::::::::.:::..::: mKIAA0 QRQGLQQTQQQQQTAALVRQLQQQLSNTQPQPSTNIFGRY 1110 1120 1130 1140 >>mFLJ00386 ( 769 res) mbe05021 (769 aa) initn: 375 init1: 201 opt: 333 Z-score: 185.9 bits: 44.2 E(): 3.3e-05 Smith-Waterman score: 345; 31.856% identity (36.278% ungapped) in 361 aa overlap (58-399:126-461) 30 40 50 60 70 80 mKIAA1 SSSRIDEYQQTNLYRVPPNYSPMSSQMTHHPQPALWGYNLVSQPQQPSFFLQNPSLNPGG : .: :.. .. :: . .: :: mFLJ00 ASVSDPMNALQSLTGGPTPGAAGIGMPPRGPGQSLGGMGGLGAMGQPLPLSGQPP--PGT 100 110 120 130 140 150 90 100 110 120 130 140 mKIAA1 SRLDPAG-SFVPTNTKQALSNMLQRRSGAMLQPPSLHAVTSQQQLLQMKL-LQQQQQQQQ : . : : . : : : :. .:: .. :. : . . .:::. :.. ::::::::: mFLJ00 SGMAPHGMAVVSTATPQT---QLQLQQVALQQQQQQQ---QQQQFQQQQAALQQQQQQQQ 160 170 180 190 200 150 160 170 180 190 mKIAA1 QQQQQQRLLRQ--AQTRPFQ------QGQPGDQAALFTAQARPSPQLPQYPGLQQAQTMP ::::::.. : :. . :: : : .: . . : : : :: : : mFLJ00 QQQQQQQFQAQQNAMQQQFQAVVQQQQLQQQQQQQHLIKLHHQSQQ--QQIQQQQLQRMA 210 220 230 240 250 260 200 210 220 230 240 250 mKIAA1 QGYTMYGTQMPLQQAAQQQPGGVVLSPSYNSRAYPAAHSSPALMERLRQLQQ-QPSGYVQ : . :. ::: : :: . .::... : ... : . .:.. :. :: .: mFLJ00 QLQLQQQQQQQQQQALQAQPP--MQQPSMQQPQPPPSQALPQQLSQLHHPQHHQPPPQAQ 270 280 290 300 310 320 260 270 280 290 300 310 mKIAA1 Q-----QASPYLQPVAGSQRLNHQALQQSPLVGGGIDAVLTPAHPNLPSVPLPQDPMRPR : . : . : . :: : :: : : .: :. .: : . :: . mFLJ00 QSPIAQNQPPQIPPQSQSQPLVSQA-QALP------GPMLYAAQQQLKFV---RAPMVVQ 330 340 350 360 370 320 330 340 350 360 370 mKIAA1 QQQVRQQQRLLQMQ-QPQQAPQPQQPSQTQSQALGLQAMQPQQPLFPRQGLQQTQQQQQT : ::. : . .: : ::: : : : .: : :.:. : . .. . : : :. mFLJ00 QPQVQPQVQQVQPQVQPQAAVQAAQSAQMV--APGVQVSQSSLTMLSSPSPGQQVQTPQS 380 390 400 410 420 430 380 390 mKIAA1 AALVRQLQKQLSSNQPQQGVT--PCAHPSHF : . : .: ::...:. : :: : mFLJ00 MPPPPQPSPQPGS-QPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPGPL 440 450 460 470 480 490 mFLJ00 NTPVNPSSVMSPAGSSQAEEQQYLDKLKQLSKYIEPLRRMINKIDKNEDRKKDLSKMKSL 500 510 520 530 540 550 >>mKIAA0827 ( 1033 res) mbg05617 (1033 aa) initn: 374 init1: 107 opt: 281 Z-score: 158.9 bits: 39.6 E(): 0.001 Smith-Waterman score: 293; 26.849% identity (30.530% ungapped) in 365 aa overlap (33-385:443-775) 10 20 30 40 50 60 mKIAA1 AELSDQGKATADEEKKTKGRKRKTKSSSRIDEYQQTNLYRVPPNYSPMSSQMTHHPQPAL : .: .:. :: : .. : :: : mKIAA0 PSAASASGSLQQSPVYQQPSHMMSALPTNEDMQMQCELFSSPPAASGNETSTTTTPQVAT 420 430 440 450 460 470 70 80 90 100 110 120 mKIAA1 WGYNLVSQPQQPSFFLQNPSLNPGGSRLDPAGSFVPTNTKQALSNMLQ-RRSGAMLQPPS : : ..:.:: . : . .:. . ......:.: .::: . :. mKIAA0 PG----------STMFQTPSSGDG----EETGAQAKQIQNSVFQTMVQMQRSGD--SQPQ 480 490 500 510 130 140 150 160 170 180 mKIAA1 LHAVTSQQQLLQMKLLQQQQQQQQQQQQQQRLLRQAQTRPFQQGQPGDQAALFTAQARPS .. .: ....... ::: .. :: .... . :. : : . .:: :: : : mKIAA0 VNLFSSTKNIMSVQNNGTQQQGNSLFQQGSEMM-SLQSGNFLQQSSHSQAQLFHPQN-PI 520 530 540 550 560 570 190 200 210 220 230 240 mKIAA1 PQLPQYPGLQQAQTMPQGYTMYGTQMPLQQAAQQQPGGVVLSPSYNSRAYPAAHSSPALM . . :.. . . . .: .. : ::. . : :. : . : : mKIAA0 ADAQNLSQETQGSIFHSPNPIVHSQTSTASSEQLQPS---MFHSQNTIAVLQGSSVP--- 580 590 600 610 620 250 260 270 280 290 mKIAA1 ERLRQLQQQPSGYVQQQASPYLQ--PVAGSQRLNHQALQQ--SPL--VGGGIDAVLTPAH : ::.:. ...:.. :: :: .... : :. ::: ... . . . mKIAA0 ----QDQQSPNIFLSQSSINNLQTNTVAQEEQISFFAAQNSISPLQSTSNTEQQAAFQQQ 630 640 650 660 670 680 300 310 320 330 340 350 mKIAA1 PNLPSVPLP---QDPMRPRQQQVRQQQRLLQMQQPQQAPQPQQ-PS-QTQSQALGLQAMQ : . . : :. .: :: . : : : :. :: :: : ::: .:.:. . mKIAA0 PPISHIQTPILSQEQAQPSQQGLFQPQVALGSLPPNPMPQNQQGPIFQTQRPIVGMQSNS 690 700 710 720 730 740 360 370 380 390 mKIAA1 PQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQPQQGVTPCAHPSHF :.: .: :: ::::: .: :. : ::: mKIAA0 PSQEQQQQQQQQQQQQQQQQ----QQQQSILFSNQNAMATMASQKQPPPNMMFSPNQNPM 750 760 770 780 790 800 mKIAA0 ASQEQQNQSIFHQQSNMAPMNQEQQPMQFQNQPTVSSLQNPGPTQSESPQTSLFHSSPQI 810 820 830 840 850 860 399 residues in 1 query sequences 1768618 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:50:10 2006 done: Mon Mar 27 10:50:10 2006 Scan time: 0.620 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]