# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpm12126.fasta.nr -Q ../query/mKIAA1635.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1635, 399 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7898917 sequences Expectation_n fit: rho(ln(x))= 6.9819+/-0.000207; mu= 2.7506+/- 0.011 mean_var=147.0655+/-27.655, 0's: 36 Z-trim: 135 B-trim: 0 in 0/66 Lambda= 0.105759 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148703412|gb|EDL35359.1| mCG13098, isoform CRA_ (1317) 2710 425.3 4e-116 gi|166232935|sp|Q8BQM9.2|MD12L_MOUSE RecName: Full (2157) 2690 422.4 4.8e-115 gi|149064696|gb|EDM14847.1| rCG50054, isoform CRA_ (1199) 2597 408.0 5.8e-111 gi|28301676|gb|AAO38813.1|AF399708_1 TRALPUSH [Hom (2145) 2415 380.4 2e-102 gi|166232934|sp|Q86YW9.2|MD12L_HUMAN RecName: Full (2145) 2415 380.4 2e-102 gi|119599207|gb|EAW78801.1| mediator of RNA polyme (2151) 2415 380.4 2.1e-102 gi|114589861|ref|XP_516821.2| PREDICTED: mediator (2145) 2408 379.4 4.3e-102 gi|109048695|ref|XP_001107022.1| PREDICTED: simila (2145) 2402 378.4 8.1e-102 gi|194663501|ref|XP_584077.4| PREDICTED: similar t (1484) 2370 373.4 1.8e-100 gi|194221724|ref|XP_001917763.1| PREDICTED: mediat (2115) 2342 369.3 4.6e-99 gi|126338216|ref|XP_001370395.1| PREDICTED: simila (2156) 2148 339.7 3.8e-90 gi|219520720|gb|AAI44560.1| Unknown (protein for M (1809) 930 153.8 2.9e-34 gi|157014587|gb|EAU76230.2| AGAP004734-PA [Anophel (1818) 520 91.2 2e-15 gi|148703413|gb|EDL35360.1| mCG13098, isoform CRA_ (1116) 516 90.4 2.1e-15 gi|149064695|gb|EDM14846.1| rCG50054, isoform CRA_ ( 998) 504 88.6 6.9e-15 gi|109510918|ref|XP_001054666.1| PREDICTED: simila (2190) 507 89.3 9e-15 gi|148682203|gb|EDL14150.1| mediator of RNA polyme (2218) 503 88.7 1.4e-14 gi|84570081|gb|AAI10697.1| Med12 protein [Mus musc ( 715) 494 86.9 1.6e-14 gi|109510916|ref|XP_001054608.1| PREDICTED: simila (2169) 498 87.9 2.3e-14 gi|123226656|emb|CAM24446.1| mediator of RNA polym (2169) 497 87.8 2.6e-14 gi|34849874|gb|AAH57119.1| Med12 protein [Mus musc (2158) 496 87.6 2.8e-14 gi|166233814|sp|A2AGH6.1|MED12_MOUSE RecName: Full (2190) 496 87.6 2.9e-14 gi|3426322|gb|AAC83164.1| OPA-containing protein 1 (2074) 494 87.3 3.4e-14 gi|34784300|gb|AAH57085.1| Med12 protein [Mus musc ( 866) 487 85.9 3.8e-14 gi|123895899|sp|Q2QCI8.1|MED12_DANRE RecName: Full (2173) 488 86.4 6.7e-14 gi|2565059|gb|AAB91440.1| CAGH45 [Homo sapiens] ( 652) 475 84.0 1.1e-13 gi|74007589|ref|XP_857075.1| PREDICTED: similar to (2026) 481 85.3 1.3e-13 gi|74007593|ref|XP_857160.1| PREDICTED: similar to (2157) 481 85.3 1.4e-13 gi|194228008|ref|XP_001915364.1| PREDICTED: mediat (2164) 481 85.3 1.4e-13 gi|74007587|ref|XP_848775.1| PREDICTED: similar to (2179) 481 85.3 1.4e-13 gi|74007595|ref|XP_857204.1| PREDICTED: similar to (2184) 481 85.3 1.4e-13 gi|74007591|ref|XP_857116.1| PREDICTED: similar to (2194) 481 85.3 1.4e-13 gi|123226658|emb|CAM24448.1| mediator of RNA polym (2182) 479 85.0 1.7e-13 gi|33354111|dbj|BAC81139.1| TNRC11 [Pongo pygmaeus (2028) 478 84.9 1.8e-13 gi|166233817|sp|Q5RCU2.2|MED12_PONPY RecName: Full (2181) 478 84.9 1.9e-13 gi|194680283|ref|XP_599229.4| PREDICTED: similar t (2180) 476 84.6 2.4e-13 gi|75045753|sp|Q7YQK8.1|MED12_PANTR RecName: Full= (2027) 475 84.4 2.5e-13 gi|33354107|dbj|BAC81137.1| TNRC11 [Homo sapiens] (2027) 475 84.4 2.5e-13 gi|109131139|ref|XP_001088218.1| PREDICTED: mediat (2143) 475 84.4 2.6e-13 gi|109131137|ref|XP_001088325.1| PREDICTED: mediat (2170) 475 84.4 2.6e-13 gi|109131135|ref|XP_001088424.1| PREDICTED: mediat (2180) 475 84.4 2.6e-13 gi|60475337|gb|EAL73272.1| myb domain-containing p (3069) 475 84.6 3.4e-13 gi|74007597|ref|XP_538072.2| PREDICTED: similar to (2186) 472 84.0 3.6e-13 gi|168274451|dbj|BAG09645.1| mediator of RNA polym (2024) 466 83.0 6.5e-13 gi|209572775|sp|Q93074.4|MED12_HUMAN RecName: Full (2177) 466 83.1 6.8e-13 gi|4530439|gb|AAD22033.1| thyroid hormone receptor (2212) 466 83.1 6.9e-13 gi|5524203|gb|AAD44162.1| OPA-containing protein [ (2023) 464 82.7 8e-13 gi|3426320|gb|AAC83163.1| OPA-containing protein [ (2023) 464 82.7 8e-13 gi|119625720|gb|EAX05315.1| mediator of RNA polyme (2176) 464 82.8 8.5e-13 gi|119625721|gb|EAX05316.1| mediator of RNA polyme (2183) 464 82.8 8.5e-13 >>gi|148703412|gb|EDL35359.1| mCG13098, isoform CRA_a [M (1317 aa) initn: 1824 init1: 1824 opt: 2710 Z-score: 2241.0 bits: 425.3 E(): 4e-116 Smith-Waterman score: 2710; 99.750% identity (99.750% similar) in 400 aa overlap (1-399:918-1317) 10 20 30 mKIAA1 KSAELSDQGKATADEEKKTKGRKRKTKSSS :::::::::::::::::::::::::::::: gi|148 PRSYYLEPLPLPPEEEEEELTSPVSQEPERKSAELSDQGKATADEEKKTKGRKRKTKSSS 890 900 910 920 930 940 40 50 60 70 80 90 mKIAA1 RIDEYQQTNLYRVPPNYSPMSSQMTHHPQPALWGYNLVSQPQQPSFFLQNPSLNPGGSRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RIDEYQQTNLYRVPPNYSPMSSQMTHHPQPALWGYNLVSQPQQPSFFLQNPSLNPGGSRL 950 960 970 980 990 1000 100 110 120 130 140 150 mKIAA1 DPAGSFVPTNTKQALSNMLQRRSGAMLQPPSLHAVTSQQQLLQMKLLQQQQQQQQQQQQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DPAGSFVPTNTKQALSNMLQRRSGAMLQPPSLHAVTSQQQLLQMKLLQQQQQQQQQQQQQ 1010 1020 1030 1040 1050 1060 160 170 180 190 200 mKIAA1 Q-RLLRQAQTRPFQQGQPGDQAALFTAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPL : :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QQRLLRQAQTRPFQQGQPGDQAALFTAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPL 1070 1080 1090 1100 1110 1120 210 220 230 240 250 260 mKIAA1 QQAAQQQPGGVVLSPSYNSRAYPAAHSSPALMERLRQLQQQPSGYVQQQASPYLQPVAGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QQAAQQQPGGVVLSPSYNSRAYPAAHSSPALMERLRQLQQQPSGYVQQQASPYLQPVAGS 1130 1140 1150 1160 1170 1180 270 280 290 300 310 320 mKIAA1 QRLNHQALQQSPLVGGGIDAVLTPAHPNLPSVPLPQDPMRPRQQQVRQQQRLLQMQQPQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QRLNHQALQQSPLVGGGIDAVLTPAHPNLPSVPLPQDPMRPRQQQVRQQQRLLQMQQPQQ 1190 1200 1210 1220 1230 1240 330 340 350 360 370 380 mKIAA1 APQPQQPSQTQSQALGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQPQQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 APQPQQPSQTQSQALGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQPQQG 1250 1260 1270 1280 1290 1300 390 mKIAA1 VTPCAHPSHF :::::::::: gi|148 VTPCAHPSHF 1310 >>gi|166232935|sp|Q8BQM9.2|MD12L_MOUSE RecName: Full=Med (2157 aa) initn: 1561 init1: 1316 opt: 2690 Z-score: 2221.7 bits: 422.4 E(): 4.8e-115 Smith-Waterman score: 2690; 98.519% identity (98.519% similar) in 405 aa overlap (1-399:1753-2157) 10 20 30 mKIAA1 KSAELSDQGKATADEEKKTKGRKRKTKSSS :::::::::::::::::::::::::::::: gi|166 PRSYYLEPLPLPPEEEEEELTSPVSQEPERKSAELSDQGKATADEEKKTKGRKRKTKSSS 1730 1740 1750 1760 1770 1780 40 50 60 70 80 90 mKIAA1 RIDEYQQTNLYRVPPNYSPMSSQMTHHPQPALWGYNLVSQPQQPSFFLQNPSLNPGGSRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 RIDEYQQTNLYRVPPNYSPMSSQMTHHPQPALWGYNLVSQPQQPSFFLQNPSLNPGGSRL 1790 1800 1810 1820 1830 1840 100 110 120 130 140 150 mKIAA1 DPAGSFVPTNTKQALSNMLQRRSGAMLQPPSLHAVTSQQQLLQMKLLQQQQQQQQQQQQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 DPAGSFVPTNTKQALSNMLQRRSGAMLQPPSLHAVTSQQQLLQMKLLQQQQQQQQQQQQQ 1850 1860 1870 1880 1890 1900 160 170 180 190 200 mKIAA1 Q-RLLRQAQTRPFQQGQPGDQAALFTAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPL : :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 QQRLLRQAQTRPFQQGQPGDQAALFTAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPL 1910 1920 1930 1940 1950 1960 210 220 230 240 250 260 mKIAA1 QQAAQQQPGGVVLSPSYNSRAYPAAHSSPALMERLRQLQQQPSGYVQQQASPYLQPVAGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 QQAAQQQPGGVVLSPSYNSRAYPAAHSSPALMERLRQLQQQPSGYVQQQASPYLQPVAGS 1970 1980 1990 2000 2010 2020 270 280 290 300 310 320 mKIAA1 QRLNHQALQQSPLVGGGIDAVLTPAHPNLPSVPLPQDPMRPRQQQVRQQQRLLQ-----M :::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|166 QRLNHQALQQSPLVGGGIDAVLTPAHPNLPSVPLPQDPMRPRQQQVRQQQRLLQVWGREM 2030 2040 2050 2060 2070 2080 330 340 350 360 370 380 mKIAA1 QQPQQAPQPQQPSQTQSQALGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 QQPQQAPQPQQPSQTQSQALGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSN 2090 2100 2110 2120 2130 2140 390 mKIAA1 QPQQGVTPCAHPSHF ::::::::::::::: gi|166 QPQQGVTPCAHPSHF 2150 >>gi|149064696|gb|EDM14847.1| rCG50054, isoform CRA_b [R (1199 aa) initn: 1456 init1: 1456 opt: 2597 Z-score: 2148.4 bits: 408.0 E(): 5.8e-111 Smith-Waterman score: 2597; 95.534% identity (97.519% similar) in 403 aa overlap (1-399:797-1199) 10 20 30 mKIAA1 KSAELSDQGKATADEEKKTKGRKRKTKSSS :::::::.::..:::::::::::::::::: gi|149 PRSYYLEPLPLPPEEEEEEPTSPVSQEPERKSAELSDHGKSAADEEKKTKGRKRKTKSSS 770 780 790 800 810 820 40 50 60 70 80 90 mKIAA1 RIDEYQQTNLYRVPPNYSPMSSQMTHHPQPALWGYNLVSQPQQPSFFLQNPSLNPGGSRL :::::::::.::.::::::::::: :: :::::::::::::::::::::: ::: ::::: gi|149 RIDEYQQTNIYRLPPNYSPMSSQMMHHTQPALWGYNLVSQPQQPSFFLQNQSLNAGGSRL 830 840 850 860 870 880 100 110 120 130 140 150 mKIAA1 DPAGSFVPTNTKQALSNMLQRRSGAMLQPPSLHAVTSQQQLLQMKLLQQQQQQQQQQQQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DPAGSFVPTNTKQALSNMLQRRSGAMLQPPSLHAVTSQQQLLQMKLLQQQQQQQQQQQQQ 890 900 910 920 930 940 160 170 180 190 200 mKIAA1 Q---RLLRQAQTRPFQQGQPGDQAALFTAQARPSPQLPQYPGLQQ-AQTMPQGYTMYGTQ : ::::::::::::::::::::::::::::::::::::::::: :::::::::::::: gi|149 QQQQRLLRQAQTRPFQQGQPGDQAALFTAQARPSPQLPQYPGLQQQAQTMPQGYTMYGTQ 950 960 970 980 990 1000 210 220 230 240 250 260 mKIAA1 MPLQQAAQQQPGGVVLSPSYNSRAYPAAHSSPALMERLRQLQQQPSGYVQQQASPYLQPV ::::::::::::::::::::.::::::::::::::::::::::::.:::::::::::::: gi|149 MPLQQAAQQQPGGVVLSPSYSSRAYPAAHSSPALMERLRQLQQQPGGYVQQQASPYLQPV 1010 1020 1030 1040 1050 1060 270 280 290 300 310 320 mKIAA1 AGSQRLNHQALQQSPLVGGGIDAVLTPAHPNLPSVPLPQDPMRPRQQQVRQQQRLLQMQQ :::::::::::::::::::.::::::::::::::::: :::::::::::::::::::::: gi|149 AGSQRLNHQALQQSPLVGGAIDAVLTPAHPNLPSVPLAQDPMRPRQQQVRQQQRLLQMQQ 1070 1080 1090 1100 1110 1120 330 340 350 360 370 380 mKIAA1 PQQAPQPQQPSQTQSQALGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQP :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PQQAPQPQQPSQPQSQALGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQP 1130 1140 1150 1160 1170 1180 390 mKIAA1 QQGVTPCAHPSHF ::::::::::::: gi|149 QQGVTPCAHPSHF 1190 >>gi|28301676|gb|AAO38813.1|AF399708_1 TRALPUSH [Homo sa (2145 aa) initn: 1226 init1: 1226 opt: 2415 Z-score: 1995.0 bits: 380.4 E(): 2e-102 Smith-Waterman score: 2415; 88.119% identity (94.307% similar) in 404 aa overlap (1-399:1750-2145) 10 20 30 mKIAA1 KSAELSDQGKATADEEKKTKGRKRKTKSSS ::::::::::.:.::::::::::::::::: gi|283 PRSYYLQPLPLPPEEEEEEPTSPVSQEPERKSAELSDQGKTTTDEEKKTKGRKRKTKSSS 1720 1730 1740 1750 1760 1770 40 50 60 70 80 90 mKIAA1 RIDEYQQTNLYRVPPNYSPMSSQMTHHPQPALWGYNLVSQPQQPSFFLQNPSLNPGGSRL :.::: :.:.:::::::::.:::: :::: .:::::::.:::::.::::: ::.:::::: gi|283 RVDEYPQSNIYRVPPNYSPISSQMMHHPQSTLWGYNLVGQPQQPGFFLQNQSLTPGGSRL 1780 1790 1800 1810 1820 1830 100 110 120 130 140 150 mKIAA1 DPAGSFVPTNTKQALSNMLQRRSGAMLQPPSLHAVTSQQQLLQMKLLQQQQQQQQQQQQQ ::::::::::::::::::::::::::.:::::::.::::::.::::::::: : gi|283 DPAGSFVPTNTKQALSNMLQRRSGAMMQPPSLHAITSQQQLIQMKLLQQQQ--------Q 1840 1850 1860 1870 1880 1890 160 170 180 190 200 210 mKIAA1 QRLLRQAQTRPFQQGQPGDQAALFTAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQ ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|283 QRLLRQAQTRPFQQGQPGDQAALFAAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQ 1900 1910 1920 1930 1940 1950 220 230 240 250 260 270 mKIAA1 QAAQQQPGGVVLSPSYNSRAYPAAHSSPALMERLRQLQQQPSGYVQQQASPYLQPVAGSQ :..::: :.:::::::::::::::::.:.:::::::.::::::::::::::::::..::: gi|283 QTSQQQAGSVVLSPSYNSRAYPAAHSNPVLMERLRQIQQQPSGYVQQQASPYLQPLTGSQ 1960 1970 1980 1990 2000 2010 280 290 300 310 320 330 mKIAA1 RLNHQALQQSPLVGGGIDAVLTPAHPNLPSVPLPQDPMRPRQQQVRQQQRLLQMQQPQQA :::::::::::::::::::::: ::::::::::::::::::: :::::::::::::::: gi|283 RLNHQALQQSPLVGGGIDAVLTSAHPNLPSVPLPQDPMRPRQPQVRQQQRLLQMQQPQQP 2020 2030 2040 2050 2060 2070 340 350 360 370 380 mKIAA1 -----PQPQQPSQTQSQALGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQ ::::: ::.:::.:::::::::::::::::::::::::::::::::::::::::: gi|283 QPQQPPQPQQSSQSQSQTLGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQ 2080 2090 2100 2110 2120 2130 390 mKIAA1 PQQGVTPCAHPSHF ::::::: .::::: gi|283 PQQGVTPYGHPSHF 2140 >>gi|166232934|sp|Q86YW9.2|MD12L_HUMAN RecName: Full=Med (2145 aa) initn: 1226 init1: 1226 opt: 2415 Z-score: 1995.0 bits: 380.4 E(): 2e-102 Smith-Waterman score: 2415; 88.119% identity (94.307% similar) in 404 aa overlap (1-399:1750-2145) 10 20 30 mKIAA1 KSAELSDQGKATADEEKKTKGRKRKTKSSS ::::::::::.:.::::::::::::::::: gi|166 PRSYYLQPLPLPPEEEEEEPTSPVSQEPERKSAELSDQGKTTTDEEKKTKGRKRKTKSSS 1720 1730 1740 1750 1760 1770 40 50 60 70 80 90 mKIAA1 RIDEYQQTNLYRVPPNYSPMSSQMTHHPQPALWGYNLVSQPQQPSFFLQNPSLNPGGSRL :.::: :.:.:::::::::.:::: :::: .:::::::.:::::.::::: ::.:::::: gi|166 RVDEYPQSNIYRVPPNYSPISSQMMHHPQSTLWGYNLVGQPQQPGFFLQNQSLTPGGSRL 1780 1790 1800 1810 1820 1830 100 110 120 130 140 150 mKIAA1 DPAGSFVPTNTKQALSNMLQRRSGAMLQPPSLHAVTSQQQLLQMKLLQQQQQQQQQQQQQ ::::::::::::::::::::::::::.:::::::.::::::.::::::::: : gi|166 DPAGSFVPTNTKQALSNMLQRRSGAMMQPPSLHAITSQQQLIQMKLLQQQQ--------Q 1840 1850 1860 1870 1880 1890 160 170 180 190 200 210 mKIAA1 QRLLRQAQTRPFQQGQPGDQAALFTAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQ ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|166 QRLLRQAQTRPFQQGQPGDQAALFAAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQ 1900 1910 1920 1930 1940 1950 220 230 240 250 260 270 mKIAA1 QAAQQQPGGVVLSPSYNSRAYPAAHSSPALMERLRQLQQQPSGYVQQQASPYLQPVAGSQ :..::: :.:::::::::::::::::.:.:::::::.::::::::::::::::::..::: gi|166 QTSQQQAGSVVLSPSYNSRAYPAAHSNPVLMERLRQIQQQPSGYVQQQASPYLQPLTGSQ 1960 1970 1980 1990 2000 2010 280 290 300 310 320 330 mKIAA1 RLNHQALQQSPLVGGGIDAVLTPAHPNLPSVPLPQDPMRPRQQQVRQQQRLLQMQQPQQA :::::::::::::::::::::: ::::::::::::::::::: :::::::::::::::: gi|166 RLNHQALQQSPLVGGGIDAVLTSAHPNLPSVPLPQDPMRPRQPQVRQQQRLLQMQQPQQP 2020 2030 2040 2050 2060 2070 340 350 360 370 380 mKIAA1 -----PQPQQPSQTQSQALGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQ ::::: ::.:::.:::::::::::::::::::::::::::::::::::::::::: gi|166 QPQQPPQPQQSSQSQSQTLGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQ 2080 2090 2100 2110 2120 2130 390 mKIAA1 PQQGVTPCAHPSHF ::::::: .::::: gi|166 PQQGVTPYGHPSHF 2140 >>gi|119599207|gb|EAW78801.1| mediator of RNA polymerase (2151 aa) initn: 1226 init1: 1226 opt: 2415 Z-score: 1995.0 bits: 380.4 E(): 2.1e-102 Smith-Waterman score: 2415; 88.119% identity (94.307% similar) in 404 aa overlap (1-399:1756-2151) 10 20 30 mKIAA1 KSAELSDQGKATADEEKKTKGRKRKTKSSS ::::::::::.:.::::::::::::::::: gi|119 PRSYYLQPLPLPPEEEEEEPTSPVSQEPERKSAELSDQGKTTTDEEKKTKGRKRKTKSSS 1730 1740 1750 1760 1770 1780 40 50 60 70 80 90 mKIAA1 RIDEYQQTNLYRVPPNYSPMSSQMTHHPQPALWGYNLVSQPQQPSFFLQNPSLNPGGSRL :.::: :.:.:::::::::.:::: :::: .:::::::.:::::.::::: ::.:::::: gi|119 RVDEYPQSNIYRVPPNYSPISSQMMHHPQSTLWGYNLVGQPQQPGFFLQNQSLTPGGSRL 1790 1800 1810 1820 1830 1840 100 110 120 130 140 150 mKIAA1 DPAGSFVPTNTKQALSNMLQRRSGAMLQPPSLHAVTSQQQLLQMKLLQQQQQQQQQQQQQ ::::::::::::::::::::::::::.:::::::.::::::.::::::::: : gi|119 DPAGSFVPTNTKQALSNMLQRRSGAMMQPPSLHAITSQQQLIQMKLLQQQQ--------Q 1850 1860 1870 1880 1890 160 170 180 190 200 210 mKIAA1 QRLLRQAQTRPFQQGQPGDQAALFTAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQ ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|119 QRLLRQAQTRPFQQGQPGDQAALFAAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQ 1900 1910 1920 1930 1940 1950 220 230 240 250 260 270 mKIAA1 QAAQQQPGGVVLSPSYNSRAYPAAHSSPALMERLRQLQQQPSGYVQQQASPYLQPVAGSQ :..::: :.:::::::::::::::::.:.:::::::.::::::::::::::::::..::: gi|119 QTSQQQAGSVVLSPSYNSRAYPAAHSNPVLMERLRQIQQQPSGYVQQQASPYLQPLTGSQ 1960 1970 1980 1990 2000 2010 280 290 300 310 320 330 mKIAA1 RLNHQALQQSPLVGGGIDAVLTPAHPNLPSVPLPQDPMRPRQQQVRQQQRLLQMQQPQQA :::::::::::::::::::::: ::::::::::::::::::: :::::::::::::::: gi|119 RLNHQALQQSPLVGGGIDAVLTSAHPNLPSVPLPQDPMRPRQPQVRQQQRLLQMQQPQQP 2020 2030 2040 2050 2060 2070 340 350 360 370 380 mKIAA1 -----PQPQQPSQTQSQALGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQ ::::: ::.:::.:::::::::::::::::::::::::::::::::::::::::: gi|119 QPQQPPQPQQSSQSQSQTLGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQ 2080 2090 2100 2110 2120 2130 390 mKIAA1 PQQGVTPCAHPSHF ::::::: .::::: gi|119 PQQGVTPYGHPSHF 2140 2150 >>gi|114589861|ref|XP_516821.2| PREDICTED: mediator of R (2145 aa) initn: 1221 init1: 1221 opt: 2408 Z-score: 1989.2 bits: 379.4 E(): 4.3e-102 Smith-Waterman score: 2408; 87.871% identity (94.059% similar) in 404 aa overlap (1-399:1750-2145) 10 20 30 mKIAA1 KSAELSDQGKATADEEKKTKGRKRKTKSSS ::::::::::.:.::::::::::::::::: gi|114 PRSYYLQPLPLPPEEEEEEPTSPVSQEPERKSAELSDQGKTTTDEEKKTKGRKRKTKSSS 1720 1730 1740 1750 1760 1770 40 50 60 70 80 90 mKIAA1 RIDEYQQTNLYRVPPNYSPMSSQMTHHPQPALWGYNLVSQPQQPSFFLQNPSLNPGGSRL :.::: :.:.:::::::::.:::: :::: .:::::::.:::::.::::: ::.:::::: gi|114 RVDEYPQSNIYRVPPNYSPISSQMMHHPQSTLWGYNLVGQPQQPGFFLQNQSLTPGGSRL 1780 1790 1800 1810 1820 1830 100 110 120 130 140 150 mKIAA1 DPAGSFVPTNTKQALSNMLQRRSGAMLQPPSLHAVTSQQQLLQMKLLQQQQQQQQQQQQQ ::::::::::::::::::::::::::.:::::::.::::::.::::::::: : gi|114 DPAGSFVPTNTKQALSNMLQRRSGAMMQPPSLHAITSQQQLIQMKLLQQQQ--------Q 1840 1850 1860 1870 1880 1890 160 170 180 190 200 210 mKIAA1 QRLLRQAQTRPFQQGQPGDQAALFTAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQ ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|114 QRLLRQAQTRPFQQGQPGDQAALFAAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQ 1900 1910 1920 1930 1940 1950 220 230 240 250 260 270 mKIAA1 QAAQQQPGGVVLSPSYNSRAYPAAHSSPALMERLRQLQQQPSGYVQQQASPYLQPVAGSQ :..::: :.::.::::::::::::::.:.:::::::.::::::::::::::::::..::: gi|114 QTSQQQAGSVVVSPSYNSRAYPAAHSNPVLMERLRQIQQQPSGYVQQQASPYLQPLTGSQ 1960 1970 1980 1990 2000 2010 280 290 300 310 320 330 mKIAA1 RLNHQALQQSPLVGGGIDAVLTPAHPNLPSVPLPQDPMRPRQQQVRQQQRLLQMQQPQQA :::::::::::::::::::::: ::::::::::::::::::: :::::::::::::::: gi|114 RLNHQALQQSPLVGGGIDAVLTSAHPNLPSVPLPQDPMRPRQPQVRQQQRLLQMQQPQQP 2020 2030 2040 2050 2060 2070 340 350 360 370 380 mKIAA1 -----PQPQQPSQTQSQALGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQ ::::: :: :::.:::::::::::::::::::::::::::::::::::::::::: gi|114 QPQQPPQPQQSSQPQSQTLGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQ 2080 2090 2100 2110 2120 2130 390 mKIAA1 PQQGVTPCAHPSHF ::::::: .::::: gi|114 PQQGVTPYGHPSHF 2140 >>gi|109048695|ref|XP_001107022.1| PREDICTED: similar to (2145 aa) initn: 1215 init1: 1215 opt: 2402 Z-score: 1984.3 bits: 378.4 E(): 8.1e-102 Smith-Waterman score: 2402; 87.871% identity (93.812% similar) in 404 aa overlap (1-399:1750-2145) 10 20 30 mKIAA1 KSAELSDQGKATADEEKKTKGRKRKTKSSS ::::::::::.:.::::::::::::::::: gi|109 PRSYYLQPLPLPPEEEEEEPTSPVSQEPERKSAELSDQGKTTTDEEKKTKGRKRKTKSSS 1720 1730 1740 1750 1760 1770 40 50 60 70 80 90 mKIAA1 RIDEYQQTNLYRVPPNYSPMSSQMTHHPQPALWGYNLVSQPQQPSFFLQNPSLNPGGSRL :.::: :.:.:::::::::.:::: :::: .:::::::.:::::.::::: ::.:::::: gi|109 RVDEYPQSNIYRVPPNYSPISSQMMHHPQSTLWGYNLVGQPQQPGFFLQNQSLTPGGSRL 1780 1790 1800 1810 1820 1830 100 110 120 130 140 150 mKIAA1 DPAGSFVPTNTKQALSNMLQRRSGAMLQPPSLHAVTSQQQLLQMKLLQQQQQQQQQQQQQ ::::::::::::::::::::::::::.:::::::.::::::.::::::::: : gi|109 DPAGSFVPTNTKQALSNMLQRRSGAMMQPPSLHAITSQQQLIQMKLLQQQQ--------Q 1840 1850 1860 1870 1880 1890 160 170 180 190 200 210 mKIAA1 QRLLRQAQTRPFQQGQPGDQAALFTAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQ ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|109 QRLLRQAQTRPFQQGQPGDQAALFAAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQ 1900 1910 1920 1930 1940 1950 220 230 240 250 260 270 mKIAA1 QAAQQQPGGVVLSPSYNSRAYPAAHSSPALMERLRQLQQQPSGYVQQQASPYLQPVAGSQ :..::: :.:::::::::::::::::.:.:::::::.::::::::::::::::::..::: gi|109 QTSQQQAGSVVLSPSYNSRAYPAAHSNPVLMERLRQIQQQPSGYVQQQASPYLQPLTGSQ 1960 1970 1980 1990 2000 2010 280 290 300 310 320 330 mKIAA1 RLNHQALQQSPLVGGGIDAVLTPAHPNLPSVPLPQDPMRPRQQQVRQQQRLLQMQQPQQA :::::::::::::::::::::: ::::::::::::::::::: :::::::::: ::::: gi|109 RLNHQALQQSPLVGGGIDAVLTSAHPNLPSVPLPQDPMRPRQPQVRQQQRLLQPQQPQQP 2020 2030 2040 2050 2060 2070 340 350 360 370 380 mKIAA1 -----PQPQQPSQTQSQALGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQ ::::: :: :::.:::::::::::::::::::::::::::::::::::::::::: gi|109 QPQQPPQPQQSSQPQSQTLGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQ 2080 2090 2100 2110 2120 2130 390 mKIAA1 PQQGVTPCAHPSHF ::::::: .::::: gi|109 PQQGVTPYGHPSHF 2140 >>gi|194663501|ref|XP_584077.4| PREDICTED: similar to Me (1484 aa) initn: 1350 init1: 1260 opt: 2370 Z-score: 1960.0 bits: 373.4 E(): 1.8e-100 Smith-Waterman score: 2370; 85.926% identity (93.580% similar) in 405 aa overlap (1-399:1088-1484) 10 20 30 mKIAA1 KSAELSDQGKATADEEKKTKGRKRKTKSSS ::::::::::...::::::::::::::::: gi|194 PRSYYLEPLPLPPEEEEEEPTSPISQEPERKSAELSDQGKTATDEEKKTKGRKRKTKSSS 1060 1070 1080 1090 1100 1110 40 50 60 70 80 90 mKIAA1 RIDEYQQTNLYRVPPNYSPMSSQMTHHPQPALWGYNLVSQPQQPSFFLQNPSLNPGGSRL :.::: :...:::::::::.:::. :::: :::::::..:::::.::::: :..:::::: gi|194 RVDEYPQSSMYRVPPNYSPISSQVMHHPQSALWGYNLMGQPQQPGFFLQNQSVTPGGSRL 1120 1130 1140 1150 1160 1170 100 110 120 130 140 150 mKIAA1 DPAGSFVPTNTKQALSNMLQRRSGAMLQPPSLHAVTSQQQLLQMKLLQQQQQQQQQQQQQ ::::::::::::::::::::::::::.:::::::.::::::.::::::::: : gi|194 DPAGSFVPTNTKQALSNMLQRRSGAMMQPPSLHAITSQQQLIQMKLLQQQQ--------Q 1180 1190 1200 1210 1220 160 170 180 190 200 210 mKIAA1 QRLLRQAQTRPFQQGQPGDQAALFTAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQ ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|194 QRLLRQAQTRPFQQGQPGDQAALFAAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQ 1230 1240 1250 1260 1270 1280 220 230 240 250 260 270 mKIAA1 QAAQQQPGGVVLSPSYNSRAYPAAHSSPALMERLRQLQQQPSGYVQQQASPYLQPVAGSQ :. ::: :.:::::.::::.::::::.:::::::::.:: :::::::::::::.:..::: gi|194 QTPQQQAGSVVLSPTYNSRTYPAAHSNPALMERLRQMQQPPSGYVQQQASPYLHPLTGSQ 1290 1300 1310 1320 1330 1340 280 290 300 310 320 330 mKIAA1 RLNHQALQQSPLVGGGIDAVLTPAHPNLPSVPLPQDPMRPRQQQVRQQQRLLQMQQPQQA :::::.:::::::::::::::: :::::::::: :::::::: :::::::::::::::: gi|194 RLNHQSLQQSPLVGGGIDAVLTSAHPNLPSVPLSQDPMRPRQPQVRQQQRLLQMQQPQQP 1350 1360 1370 1380 1390 1400 340 350 360 370 380 mKIAA1 PQPQQP------SQTQSQALGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSN :::::: ::::::.::::.:::::::::::::::::::::::::::::::::::: gi|194 PQPQQPPQPQGSSQTQSQTLGLQTMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSN 1410 1420 1430 1440 1450 1460 390 mKIAA1 QPQQGVTPCAHPSHF :::::::: .::::: gi|194 QPQQGVTPYGHPSHF 1470 1480 >>gi|194221724|ref|XP_001917763.1| PREDICTED: mediator c (2115 aa) initn: 1545 init1: 1545 opt: 2342 Z-score: 1934.9 bits: 369.3 E(): 4.6e-99 Smith-Waterman score: 2342; 85.891% identity (93.317% similar) in 404 aa overlap (1-399:1722-2115) 10 20 30 mKIAA1 KSAELSDQGKATADEEKKTKGRKRKTKSSS ::::::::::.::::::::::::::::::: gi|194 PRSYYLEPLPLPPEEEEEEPSSPVSQEPERKSAELSDQGKTTADEEKKTKGRKRKTKSSS 1700 1710 1720 1730 1740 1750 40 50 60 70 80 90 mKIAA1 RIDEYQQTNLYRVPPNYSPMSSQMTHHPQPALWGYNLVSQPQQPSFFLQNPSLNPGGSRL : ::: :...::.::::::.:::: :::: :::::::..:::::.::::: ::.:::::: gi|194 RADEYPQSSMYRAPPNYSPVSSQMMHHPQSALWGYNLMGQPQQPGFFLQNQSLTPGGSRL 1760 1770 1780 1790 1800 1810 100 110 120 130 140 150 mKIAA1 DPAGSFVPTNTKQALSNMLQRRSGAMLQPPSLHAVTSQQQLLQMKLLQQQQQQQQQQQQQ ::::::::::::::::::::::::::.:::::::.::::::.::.::::::::: : gi|194 DPAGSFVPTNTKQALSNMLQRRSGAMMQPPSLHAITSQQQLIQMRLLQQQQQQQ-----Q 1820 1830 1840 1850 1860 160 170 180 190 200 210 mKIAA1 QRLLRQAQTRPFQQGQPGDQAALFTAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQ ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|194 QRLLRQAQTRPFQQGQPGDQAALFAAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQ 1870 1880 1890 1900 1910 1920 220 230 240 250 260 270 mKIAA1 QAAQQQPGGVVLSPSYNSRAYPAAHSSPALMERLRQLQQQPSGYVQQQASPYLQPVAGSQ :. ::: :.:::::.::::.::::::.:::::::::.::::::::::::::::::..::: gi|194 QTPQQQAGSVVLSPTYNSRTYPAAHSNPALMERLRQMQQQPSGYVQQQASPYLQPLTGSQ 1930 1940 1950 1960 1970 1980 280 290 300 310 320 mKIAA1 RLNHQALQQSPLVGGGIDAVLTPAHPNLPSVPLPQDPMRPRQQQVRQQQRLLQ-----MQ :::::.:::::::::::::::: .::.::::::::::::::: :::::::::: :: gi|194 RLNHQSLQQSPLVGGGIDAVLTSTHPSLPSVPLPQDPMRPRQPQVRQQQRLLQVRGWEMQ 1990 2000 2010 2020 2030 2040 330 340 350 360 370 380 mKIAA1 QPQQAPQPQQPSQTQSQALGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQ :::: ::: : :::.:.::::::::::::: :::::::::::::::::::::::::: gi|194 QPQQPPQP--P---QSQTLSLQAMQPQQPLFPRPGLQQTQQQQQTAALVRQLQKQLSSNQ 2050 2060 2070 2080 2090 2100 390 mKIAA1 PQQGVTPCAHPSHF :::::.: .::::: gi|194 PQQGVAPYGHPSHF 2110 399 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sun Mar 15 06:29:19 2009 done: Sun Mar 15 06:35:42 2009 Total Scan time: 868.430 Total Display time: 0.200 Function used was FASTA [version 34.26.5 April 26, 2007]