FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1830.ptfa, 477 aa vs ./tmplib.26680 library 1768540 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.0084+/-0.00385; mu= 18.0997+/- 0.257 mean_var=72.9900+/-16.773, 0's: 0 Z-trim: 3 B-trim: 144 in 1/35 Lambda= 0.1501 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0573 ( 436 res) mfj02119 ( 436) 172 47 4.4e-06 mKIAA1162 ( 354 res) mbg18051 ( 354) 170 46 5.2e-06 mKIAA0962 ( 820 res) mbg07840 ( 820) 158 44 5.2e-05 >>mKIAA0573 ( 436 res) mfj02119 (436 aa) initn: 132 init1: 92 opt: 172 Z-score: 201.6 bits: 46.6 E(): 4.4e-06 Smith-Waterman score: 172; 19.572% identity (20.984% ungapped) in 327 aa overlap (53-366:67-384) 30 40 50 60 70 80 mKIAA1 ANAVGRRSWAALRLCAAVILLDLAVCKGFVEDLNESFKDNRKDDIWLVDFYAPWCGHCKK :...: ... :. ::.::: :: . mKIAA0 LSLADLRCSLLLLVTSIFTPITAEIASLDSENIDEILNNA---DVALVNFYADWCRFSQM 40 50 60 70 80 90 90 100 110 120 130 mKIAA1 LEPIWNEVGLEMKS---IGSPVKVGKMDATSYSSIASEFGVRGYPTIKLLKGDLAYN--Y :.::..:.. .: . : ...: ..:.::... . :::.::... . .. : mKIAA0 LHPIFEEASDVIKEEYPDKNQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREY 100 110 120 130 140 150 140 150 160 170 180 190 mKIAA1 RGPRTKDDIIEFAHRVSGALIRPLPSQQMFDHVRKRHRVFFVYIGGESPLKEKYID-AAS :: :. . .. .. .. .. . : . .. . .: .. :. .. . . .. .:: mKIAA0 RGQRSVKALADYIRQQKSNPVHEIQSLDEVTNLDRSKRNIIGYFEQKDSENYRVFERVAS 160 170 180 190 200 210 200 210 220 230 240 250 mKIAA1 ELIVYTYFFSASEDVV-PEYVTLKEMPAVLVFKDDTYFVYDEYEDGDLSSW-ISRERFQN : :.:: :. :: . .. ..: . : :..... .. . .:. mKIAA0 ILHDDCAFLSAFGDLSKPERYNGDNV----IYKPPGRSAPDMVYLGSMTNFDVTYNWIQD 220 230 240 250 260 260 270 280 290 300 310 mKIAA1 Y-LTMDGFLLYELGDTGKLVAIAVIDEKNTSLEHTRLKSIIQEVARDFRDHFHRDFQFGH . . . .: :. .. . . . . :. . .::::.. .. . ..: : mKIAA0 KCVPLVREITFENGEELTEEGLPFLILFHMKDDTESLEIFQNEVARQLISE-KGTINFLH 270 280 290 300 310 320 320 330 340 350 360 mKIAA1 MDGNDYINTLLMDELTVPT---IVVLNTSNQQYFLLD-RHIKDASDMVQFINSILDGTVP : . . . :: . : :. ...... ..: . : . . . . ::. .. .: mKIAA0 ADCDKFRHPLLHIQKT-PADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLH 330 340 350 360 370 380 370 380 390 400 410 420 mKIAA1 AQGGDSIFQRLKRIVFDAKSTIVSIFKSSPLMGCFLFGLPLGVISIMCYGIYTADTDGGY mKIAA0 REFHHGPDPTDTAPGEQDQDVASSPPESSFQKLAPSEYRYTLLRDRDEL 390 400 410 420 430 >>mKIAA1162 ( 354 res) mbg18051 (354 aa) initn: 143 init1: 83 opt: 170 Z-score: 200.3 bits: 46.0 E(): 5.2e-06 Smith-Waterman score: 170; 22.785% identity (24.161% ungapped) in 158 aa overlap (5-161:12-161) 10 20 30 40 50 mKIAA1 GGGSLHYLSLLALIAGF-TPRSMANAVGRRSWAALRLCAAVILLDLAVCKGFV : ::. .. .:: .: .: .: : .. : . .. : mKIAA1 EAQPLLPALRELSYLTGATMTGGFCVPVLLA------AWLAAAAAEGLEQAALPAEESRV 10 20 30 40 50 60 70 80 90 100 110 mKIAA1 EDLNESFKDNRKDDIWLVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYS . .. : . :.. :::::: :.. . :. . . ... ..:::.:. . mKIAA1 QPMTASNWTLVMEGEWMLKFYAPWCPSCQQTDSEWETFAKNGETL--QISVGKVDVIQEP 60 70 80 90 100 110 120 130 140 150 160 170 mKIAA1 SIASEFGVRGYPTIKLLKGDLAYNYRGPRTKDDIIEFAHRVSGALIRPLPSQQMFDHVRK .....: : :.. : . :::: .:. .. . . ..:: mKIAA1 GLSGRFFVTTLPAFFHAKDGIFRRYRGPGIYEDLQNYILEKKWQSVEPLTGWKSPASLTM 120 130 140 150 160 170 180 190 200 210 220 230 mKIAA1 RHRVFFVYIGGESPLKEKYIDAASELIVYTYFFSASEDVVPEYVTLKEMPAVLVFKDDTY mKIAA1 SGMAGLFSISGKIWHLHNYFTVTLGIPAWCSYVFFVIATLVFGLFMGLILVVISECFCVP 180 190 200 210 220 230 >>mKIAA0962 ( 820 res) mbg07840 (820 aa) initn: 89 init1: 89 opt: 158 Z-score: 182.3 bits: 43.9 E(): 5.2e-05 Smith-Waterman score: 158; 21.429% identity (24.365% ungapped) in 224 aa overlap (53-263:198-407) 30 40 50 60 70 80 mKIAA1 ANAVGRRSWAALRLCAAVILLDLAVCKGFVEDLNESFKDNRKDDIWLVDFYAPWCGHCKK : : :::: .:. . . :: : . mKIAA0 DESFFHFPFNAERRDSGDEKYLLHFSHYVNEVLPESFKRP-----YLIKITSDWCFSCIH 170 180 190 200 210 220 90 100 110 120 130 140 mKIAA1 LEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTI-KLLKGDLAYNYRGPR .::.:.:: :....: : .: . : .: ..:... :.: ...: ... ... mKIAA0 IEPVWKEVVQELEGLG--VGIGVVHAGYERRLAHHLGAHSTPSILGVISGKITF-FHNAV 230 240 250 260 270 150 160 170 180 190 mKIAA1 TKDDIIEFAHRV-SGALIRPLPSQQM------FDHVRKRHRVFFVYIGGESPLKEK---- ..... .:.. . : :.. . .... ... : : ..: . :: : mKIAA0 VHENLRQFVESLLPGNLVEKVTNKNYVRFLSGWQQENKPHALLFGQTPA-VPLMYKLTAF 280 290 300 310 320 330 200 210 220 230 240 mKIAA1 -YIDAASELIVYTYFFSASEDVVPEYVTLKEMPAVLVFKDDTYFVYDEYEDGDLSSWISR : : .: ::. . .. :... .: . :..:.::. .. : . ... mKIAA0 AYKDYVSFGYVYVGLRGV-EEMTRQYNVNLYTPTMLIFKEHI----NKPADVIQARGLKK 340 350 360 370 380 390 250 260 270 280 290 300 mKIAA1 ERFQNYLTMDGFLLYELGDTGKLVAIAVIDEKNTSLEHTRLKSIIQEVARDFRDHFHRDF . ........ .:: mKIAA0 QVIEDFIAQNKYLLASRLTSQRLFHELCPVKRSHRQRKYCVVLLTAETNKVSKPFEAFLS 400 410 420 430 440 450 477 residues in 1 query sequences 1768540 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:54:00 2006 done: Mon Mar 27 10:54:01 2006 Scan time: 0.690 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]