FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1460.ptfa, 265 aa
 vs ./tmplib.26680 library

1768752 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.2142+/-0.00603; mu= 1.7672+/- 0.402
 mean_var=178.6902+/-41.493, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.0959

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1582  ( 1362 res)   mbg06675                  (1362)  540   87 6.7e-18


>>mKIAA1582  ( 1362 res)   mbg06675                       (1362 aa)
 initn: 589 init1: 273 opt: 540  Z-score: 413.7  bits: 86.6 E(): 6.7e-18
Smith-Waterman score: 630;  41.532% identity (48.131% ungapped) in 248 aa overlap (4-243:230-451)

                                            10         20          
mKIAA1                            SNQWGGC--KEDKS-AWNDSQKSK-QGWGDGQK
                                     :.:   .:::: .:.. :: : :.:::::.
mKIAA1 NKAPSGPGVWGDSISSTAVNNAAATKSGHAWSGTVNQEDKSPTWGEPQKPKSQNWGDGQR
     200       210       220       230       240       250         

      30        40         50        60        70        80        
mKIAA1 SSQGWSISAGDNWGESSRS-NHWGEANKKSSSGGSDSDRSISGWNELGKTSSFTWGNNIN
       .. .:: .::: :..::   .: :...:..:.  .:..:: ::::.  . ..  ::.. :
mKIAA1 ANPAWSTGAGD-WADSSSVLGHLGDGKKNGSGWDADGNRSGSGWNDATRCGTSGWGSGTN
     260       270        280       290       300       310        

         90       100       110       120       130       140      
mKIAA1 P--NNSSGWDESSKPNSSQGWGDPPKCNQSLGWGDSSKPVSSPDWNKQQDIVGSWGIPPA
          : ...: :: ::. .:.:.  :. :.  .:: .                       :
mKIAA1 AKVNPGTNWGESLKPGPQQNWAHKPQDNNVSNWGGA-----------------------A
      320       330       340       350                            

        150       160        170       180       190       200     
mKIAA1 TSKPPGTGWLGGPIPAPAKEE-EPTGWEEPSPESIRRKMEIDDGTSAWGDPSKYNYKNVN
       . :  ::::.:::.:.  :.  : :::::::: ::::::::::::::::::: :: :.::
mKIAA1 SVKQTGTGWIGGPLPVKQKDSSEATGWEEPSPPSIRRKMEIDDGTSAWGDPSTYNNKTVN
         360       370       380       390       400       410     

         210       220       230       240       250       260     
mKIAA1 MWNKNIPEASGRSDQQAQMHRLLPAASAVSSKETSSGSGKRSRVECRGIVEASFVLTCLS
       ::..: :    .:.  :      :..:... .  .  :                      
mKIAA1 MWDRNNPVI--QSSTTAPATPTTPTSSSTTHRAETPPSHQAGTQLNRSPLLGPVSSGWGE
         420         430       440       450       460       470   

mKIAA1 MPSVHSKAENSWGEPSSPCTLVDNGTAAWGKPPSSGSGWDHPAEPVVPFGRASAPAAAPA
           480       490       500       510       520       530   




265 residues in 1 query   sequences
1768752 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:45:42 2006 done: Mon Mar 27 10:45:43 2006
 Scan time:  0.490 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]