# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpm11279.fasta.nr -Q ../query/mFLJ00294.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
mFLJ00294, 163 aa
vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library
2727779818 residues in 7921681 sequences
statistics sampled from 60000 to 7921233 sequences
Expectation_n fit: rho(ln(x))= 5.5009+/-0.000183; mu= 5.0444+/- 0.010
mean_var=74.1808+/-14.388, 0's: 39 Z-trim: 39 B-trim: 0 in 0/65
Lambda= 0.148912
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7921681)
gi|47847500|dbj|BAD21422.1| mFLJ00294 protein [Mus ( 163) 1035 230.8 7.1e-59
gi|124249097|ref|NP_001074282.1| RAB11 family inte (1166) 1035 231.3 3.6e-58
gi|109504361|ref|XP_001070627.1| PREDICTED: simila ( 908) 973 217.9 3e-54
gi|73979203|ref|XP_539967.2| PREDICTED: similar to (1273) 884 198.9 2.2e-48
gi|109086159|ref|XP_001089664.1| PREDICTED: simila (1275) 883 198.7 2.6e-48
gi|33439251|gb|AAQ18784.1| Rab11-family interactin ( 612) 877 197.2 3.5e-48
gi|28273122|dbj|BAC56924.1| FLJ00294 protein [Homo ( 681) 877 197.2 3.8e-48
gi|50659104|ref|NP_001002814.1| RAB11 family inter (1283) 877 197.4 6.4e-48
gi|33439255|gb|AAQ18786.1| Rab11-family interactin (1283) 877 197.4 6.4e-48
gi|50363230|ref|NP_001002233.1| RAB11 family inter ( 612) 871 195.9 8.5e-48
gi|67472130|sp|Q6WKZ4.2|RFIP1_HUMAN RecName: Full= (1283) 871 196.1 1.6e-47
gi|149541453|ref|XP_001519944.1| PREDICTED: simila (1348) 796 180.0 1.1e-42
gi|18042544|gb|AAL02425.2|AF237668_1 Rab11 family ( 673) 776 175.5 1.3e-41
gi|126304077|ref|XP_001381852.1| PREDICTED: simila (1290) 760 172.2 2.4e-40
gi|74181553|dbj|BAE30042.1| unnamed protein produc ( 645) 716 162.6 9.4e-38
gi|67472138|sp|Q9D620.1|RFIP1_MOUSE RecName: Full= ( 645) 716 162.6 9.4e-38
gi|116138490|gb|AAI25401.1| Rab11fip1 protein [Mus ( 645) 716 162.6 9.4e-38
gi|97181130|sp|Q3B7T9.1|RFIP1_RAT RecName: Full=Ra ( 648) 682 155.3 1.5e-35
gi|194226439|ref|XP_001915472.1| PREDICTED: RAB11 ( 650) 668 152.3 1.2e-34
gi|73979205|ref|XP_857501.1| PREDICTED: similar to ( 649) 666 151.9 1.6e-34
gi|193787318|dbj|BAG52524.1| unnamed protein produ ( 415) 642 146.6 4e-33
gi|68139024|gb|AAY86040.1| Rab11-family interactin ( 501) 642 146.6 4.6e-33
gi|119583753|gb|EAW63349.1| RAB11 family interacti ( 648) 642 146.7 5.7e-33
gi|78459239|gb|ABB43161.1| RAB11-family interactin ( 649) 642 146.7 5.7e-33
gi|20068811|gb|AAM09571.1|AF368294_1 Rab-coupling ( 649) 642 146.7 5.7e-33
gi|50603589|gb|AAH77720.1| RAB11 family interactin ( 649) 636 145.4 1.4e-32
gi|194679234|ref|XP_597040.3| PREDICTED: similar t ( 644) 612 140.3 5e-31
gi|224080865|ref|XP_002194072.1| PREDICTED: simila ( 792) 585 134.5 3.3e-29
gi|118101354|ref|XP_001233961.1| PREDICTED: hypoth ( 623) 509 118.1 2.2e-24
gi|38018633|gb|AAR08363.1| Rab coupling protein [M ( 217) 491 114.0 1.4e-23
gi|21748562|dbj|BAC03418.1| FLJ00355 protein [Homo ( 469) 435 102.2 1.1e-19
gi|38260694|gb|AAR15506.1| NOEL1C [Homo sapiens] ( 550) 435 102.2 1.2e-19
gi|134023869|gb|AAI35581.1| Rab11fip1 protein [Xen ( 601) 406 96.0 9.9e-18
gi|63101551|gb|AAH94487.1| LOC432290 protein [Xeno ( 607) 398 94.3 3.3e-17
gi|47937658|gb|AAH72241.1| LOC432290 protein [Xeno ( 616) 398 94.3 3.3e-17
gi|149634642|ref|XP_001514372.1| PREDICTED: hypoth ( 317) 266 65.7 6.6e-09
gi|76655248|ref|XP_612748.2| PREDICTED: RAB11 fami ( 511) 267 66.1 8.4e-09
gi|194042110|ref|XP_001927936.1| PREDICTED: simila ( 512) 267 66.1 8.4e-09
gi|149689648|ref|XP_001494294.1| PREDICTED: simila ( 512) 267 66.1 8.4e-09
gi|224052926|ref|XP_002187571.1| PREDICTED: RAB11 ( 509) 266 65.9 9.7e-09
gi|73998902|ref|XP_535026.2| PREDICTED: similar to ( 615) 267 66.1 9.8e-09
gi|33439253|gb|AAQ18785.1| no Rab11-binding protei ( 504) 265 65.7 1.1e-08
gi|33439257|gb|AAQ18787.1| no Rab11-binding protei ( 504) 265 65.7 1.1e-08
gi|149040528|gb|EDL94566.1| RAB11 family interacti ( 370) 263 65.1 1.2e-08
gi|149040527|gb|EDL94565.1| RAB11 family interacti ( 512) 263 65.2 1.5e-08
gi|148669881|gb|EDL01828.1| RAB11 family interacti ( 370) 261 64.7 1.6e-08
gi|57242913|gb|AAH89010.1| Rab11fip2 protein [Mus ( 386) 261 64.7 1.6e-08
gi|67106797|gb|AAY67796.1| RAB11-FIP2 long isoform ( 532) 262 65.0 1.8e-08
gi|114632974|ref|XP_001152212.1| PREDICTED: RAB11 ( 532) 262 65.0 1.8e-08
gi|148669882|gb|EDL01829.1| RAB11 family interacti ( 512) 261 64.8 2.1e-08
>>gi|47847500|dbj|BAD21422.1| mFLJ00294 protein [Mus mus (163 aa)
initn: 1035 init1: 1035 opt: 1035 Z-score: 1213.3 bits: 230.8 E(): 7.1e-59
Smith-Waterman score: 1035; 100.000% identity (100.000% similar) in 163 aa overlap (1-163:1-163)
10 20 30 40 50 60
mFLJ00 TSEAESQKQATADVSTSRAENFGKKKPLLQAWVTPSEIHPTPALPSAGAGAAKHRPHPVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|478 TSEAESQKQATADVSTSRAENFGKKKPLLQAWVTPSEIHPTPALPSAGAGAAKHRPHPVK
10 20 30 40 50 60
70 80 90 100 110 120
mFLJ00 PMNTTATKIANSSLGTATIITENLISEALMKKYQPSDPAFAYAQLTHDELIQLVLKQKET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|478 PMNTTATKIANSSLGTATIITENLISEALMKKYQPSDPAFAYAQLTHDELIQLVLKQKET
70 80 90 100 110 120
130 140 150 160
mFLJ00 ISKKEFQVRELEDYIDNLLVRVMEETPNILRVPAQMGKKAGKM
:::::::::::::::::::::::::::::::::::::::::::
gi|478 ISKKEFQVRELEDYIDNLLVRVMEETPNILRVPAQMGKKAGKM
130 140 150 160
>>gi|124249097|ref|NP_001074282.1| RAB11 family interact (1166 aa)
initn: 1035 init1: 1035 opt: 1035 Z-score: 1200.7 bits: 231.3 E(): 3.6e-58
Smith-Waterman score: 1035; 100.000% identity (100.000% similar) in 163 aa overlap (1-163:1004-1166)
10 20 30
mFLJ00 TSEAESQKQATADVSTSRAENFGKKKPLLQ
::::::::::::::::::::::::::::::
gi|124 QDSSVPSPSVAETFPAAYSSPSSPPSDTHHTSEAESQKQATADVSTSRAENFGKKKPLLQ
980 990 1000 1010 1020 1030
40 50 60 70 80 90
mFLJ00 AWVTPSEIHPTPALPSAGAGAAKHRPHPVKPMNTTATKIANSSLGTATIITENLISEALM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|124 AWVTPSEIHPTPALPSAGAGAAKHRPHPVKPMNTTATKIANSSLGTATIITENLISEALM
1040 1050 1060 1070 1080 1090
100 110 120 130 140 150
mFLJ00 KKYQPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|124 KKYQPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
1100 1110 1120 1130 1140 1150
160
mFLJ00 RVPAQMGKKAGKM
:::::::::::::
gi|124 RVPAQMGKKAGKM
1160
>>gi|109504361|ref|XP_001070627.1| PREDICTED: similar to (908 aa)
initn: 973 init1: 973 opt: 973 Z-score: 1130.4 bits: 217.9 E(): 3e-54
Smith-Waterman score: 973; 92.638% identity (97.546% similar) in 163 aa overlap (1-163:746-908)
10 20 30
mFLJ00 TSEAESQKQATADVSTSRAENFGKKKPLLQ
:. ::::::::::::..:.:::::::::::
gi|109 LDSPVRSPSLAETFPATHSFPGSPPSDTHHTTVAESQKQATADVSSNRVENFGKKKPLLQ
720 730 740 750 760 770
40 50 60 70 80 90
mFLJ00 AWVTPSEIHPTPALPSAGAGAAKHRPHPVKPMNTTATKIANSSLGTATIITENLISEALM
::::::::::.:: :::::::::::::::::::::: ::.::::::::::.::::.::::
gi|109 AWVTPSEIHPVPAQPSAGAGAAKHRPHPVKPMNTTAPKITNSSLGTATIISENLINEALM
780 790 800 810 820 830
100 110 120 130 140 150
mFLJ00 KKYQPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 KKYQPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
840 850 860 870 880 890
160
mFLJ00 RVPAQMGKKAGKM
::::: :::::::
gi|109 RVPAQTGKKAGKM
900
>>gi|73979203|ref|XP_539967.2| PREDICTED: similar to Rab (1273 aa)
initn: 884 init1: 884 opt: 884 Z-score: 1024.9 bits: 198.9 E(): 2.2e-48
Smith-Waterman score: 884; 84.663% identity (95.706% similar) in 163 aa overlap (1-163:1111-1273)
10 20 30
mFLJ00 TSEAESQKQATADVSTSRAENFGKKKPLLQ
:: :::::.:::. :....:: ::.:::::
gi|739 LDSPVPSPSFSETFPITHSFPSHPHADTHHTSTAESQKKATAEGSADKVENSGKRKPLLQ
1090 1100 1110 1120 1130 1140
40 50 60 70 80 90
mFLJ00 AWVTPSEIHPTPALPSAGAGAAKHRPHPVKPMNTTATKIANSSLGTATIITENLISEALM
:::.::: .:. : ::::.:.:::: ::::::::::::::::::::::::.::::.:..:
gi|739 AWVSPSETQPVSAQPSAGTGSAKHRLHPVKPMNTTATKIANSSLGTATIISENLINETMM
1150 1160 1170 1180 1190 1200
100 110 120 130 140 150
mFLJ00 KKYQPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|739 KKYNPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
1210 1220 1230 1240 1250 1260
160
mFLJ00 RVPAQMGKKAGKM
:::::.:::::::
gi|739 RVPAQVGKKAGKM
1270
>>gi|109086159|ref|XP_001089664.1| PREDICTED: similar to (1275 aa)
initn: 883 init1: 883 opt: 883 Z-score: 1023.7 bits: 198.7 E(): 2.6e-48
Smith-Waterman score: 883; 82.822% identity (95.706% similar) in 163 aa overlap (1-163:1113-1275)
10 20 30
mFLJ00 TSEAESQKQATADVSTSRAENFGKKKPLLQ
:: :::::.:::. :..:.:::::.:::::
gi|109 LDDPVPSPSPSELFPATQSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENFGKRKPLLQ
1090 1100 1110 1120 1130 1140
40 50 60 70 80 90
mFLJ00 AWVTPSEIHPTPALPSAGAGAAKHRPHPVKPMNTTATKIANSSLGTATIITENLISEALM
:::.::: ::. : :.::.:.:::: :::::::.:.::.:::::::::::.::: .::.:
gi|109 AWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATTTKVANSSLGTATIISENLNNEAMM
1150 1160 1170 1180 1190 1200
100 110 120 130 140 150
mFLJ00 KKYQPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 KKYSPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
1210 1220 1230 1240 1250 1260
160
mFLJ00 RVPAQMGKKAGKM
:.:.:.:::::::
gi|109 RIPTQVGKKAGKM
1270
>>gi|33439251|gb|AAQ18784.1| Rab11-family interacting pr (612 aa)
initn: 877 init1: 877 opt: 877 Z-score: 1021.4 bits: 197.2 E(): 3.5e-48
Smith-Waterman score: 877; 82.209% identity (95.092% similar) in 163 aa overlap (1-163:450-612)
10 20 30
mFLJ00 TSEAESQKQATADVSTSRAENFGKKKPLLQ
:: :::::.:::. :..:.:::::.:::::
gi|334 LDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENFGKRKPLLQ
420 430 440 450 460 470
40 50 60 70 80 90
mFLJ00 AWVTPSEIHPTPALPSAGAGAAKHRPHPVKPMNTTATKIANSSLGTATIITENLISEALM
:::.::: ::. : :.::.:.:::: :::::::.::::.:: ::::::::.::: .:..:
gi|334 AWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISENLNNEVMM
480 490 500 510 520 530
100 110 120 130 140 150
mFLJ00 KKYQPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|334 KKYSPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
540 550 560 570 580 590
160
mFLJ00 RVPAQMGKKAGKM
:.:.:.:::::::
gi|334 RIPTQVGKKAGKM
600 610
>>gi|28273122|dbj|BAC56924.1| FLJ00294 protein [Homo sap (681 aa)
initn: 877 init1: 877 opt: 877 Z-score: 1020.7 bits: 197.2 E(): 3.8e-48
Smith-Waterman score: 877; 82.209% identity (95.092% similar) in 163 aa overlap (1-163:519-681)
10 20 30
mFLJ00 TSEAESQKQATADVSTSRAENFGKKKPLLQ
:: :::::.:::. :..:.:::::.:::::
gi|282 LDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENFGKRKPLLQ
490 500 510 520 530 540
40 50 60 70 80 90
mFLJ00 AWVTPSEIHPTPALPSAGAGAAKHRPHPVKPMNTTATKIANSSLGTATIITENLISEALM
:::.::: ::. : :.::.:.:::: :::::::.::::.:: ::::::::.::: .:..:
gi|282 AWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISENLNNEVMM
550 560 570 580 590 600
100 110 120 130 140 150
mFLJ00 KKYQPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 KKYSPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
610 620 630 640 650 660
160
mFLJ00 RVPAQMGKKAGKM
:.:.:.:::::::
gi|282 RIPTQVGKKAGKM
670 680
>>gi|50659104|ref|NP_001002814.1| RAB11 family interacti (1283 aa)
initn: 877 init1: 877 opt: 877 Z-score: 1016.7 bits: 197.4 E(): 6.4e-48
Smith-Waterman score: 877; 82.209% identity (95.092% similar) in 163 aa overlap (1-163:1121-1283)
10 20 30
mFLJ00 TSEAESQKQATADVSTSRAENFGKKKPLLQ
:: :::::.:::. :..:.:::::.:::::
gi|506 LDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENFGKRKPLLQ
1100 1110 1120 1130 1140 1150
40 50 60 70 80 90
mFLJ00 AWVTPSEIHPTPALPSAGAGAAKHRPHPVKPMNTTATKIANSSLGTATIITENLISEALM
:::.::: ::. : :.::.:.:::: :::::::.::::.:: ::::::::.::: .:..:
gi|506 AWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISENLNNEVMM
1160 1170 1180 1190 1200 1210
100 110 120 130 140 150
mFLJ00 KKYQPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|506 KKYSPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
1220 1230 1240 1250 1260 1270
160
mFLJ00 RVPAQMGKKAGKM
:.:.:.:::::::
gi|506 RIPTQVGKKAGKM
1280
>>gi|33439255|gb|AAQ18786.1| Rab11-family interacting pr (1283 aa)
initn: 877 init1: 877 opt: 877 Z-score: 1016.7 bits: 197.4 E(): 6.4e-48
Smith-Waterman score: 877; 82.209% identity (95.092% similar) in 163 aa overlap (1-163:1121-1283)
10 20 30
mFLJ00 TSEAESQKQATADVSTSRAENFGKKKPLLQ
:: :::::.:::. :..:.:::::.:::::
gi|334 LDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENFGKRKPLLQ
1100 1110 1120 1130 1140 1150
40 50 60 70 80 90
mFLJ00 AWVTPSEIHPTPALPSAGAGAAKHRPHPVKPMNTTATKIANSSLGTATIITENLISEALM
:::.::: ::. : :.::.:.:::: :::::::.::::.:: ::::::::.::: .:..:
gi|334 AWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISENLNNEVMM
1160 1170 1180 1190 1200 1210
100 110 120 130 140 150
mFLJ00 KKYQPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|334 KKYSPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
1220 1230 1240 1250 1260 1270
160
mFLJ00 RVPAQMGKKAGKM
:.:.:.:::::::
gi|334 RIPTQVGKKAGKM
1280
>>gi|50363230|ref|NP_001002233.1| RAB11 family interacti (612 aa)
initn: 871 init1: 871 opt: 871 Z-score: 1014.4 bits: 195.9 E(): 8.5e-48
Smith-Waterman score: 871; 81.595% identity (94.479% similar) in 163 aa overlap (1-163:450-612)
10 20 30
mFLJ00 TSEAESQKQATADVSTSRAENFGKKKPLLQ
:: :::::.:::. :..:.:::::.:::::
gi|503 LDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENFGKRKPLLQ
420 430 440 450 460 470
40 50 60 70 80 90
mFLJ00 AWVTPSEIHPTPALPSAGAGAAKHRPHPVKPMNTTATKIANSSLGTATIITENLISEALM
:::.::: ::. : :.::.:.:::: :::::::. :::.:: ::::::::.::: .:..:
gi|503 AWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNAMATKVANCSLGTATIISENLNNEVMM
480 490 500 510 520 530
100 110 120 130 140 150
mFLJ00 KKYQPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|503 KKYSPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNIL
540 550 560 570 580 590
160
mFLJ00 RVPAQMGKKAGKM
:.:.:.:::::::
gi|503 RIPTQVGKKAGKM
600 610
163 residues in 1 query sequences
2727779818 residues in 7921681 library sequences
Tcomplib [34.26] (2 proc)
start: Fri Mar 13 04:52:59 2009 done: Fri Mar 13 04:57:16 2009
Total Scan time: 615.370 Total Display time: 0.040
Function used was FASTA [version 34.26.5 April 26, 2007]