FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1433.ptfa, 655 aa vs ./tmplib.26680 library 1768362 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 13.2163+/-0.00977; mu= -22.5113+/- 0.648 mean_var=530.2933+/-125.353, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.0557 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1758 ( 1565 res) mic23055 (1565) 782 78 9.5e-15 >>mKIAA1758 ( 1565 res) mic23055 (1565 aa) initn: 734 init1: 441 opt: 782 Z-score: 357.1 bits: 77.6 E(): 9.5e-15 Smith-Waterman score: 1277; 38.788% identity (44.599% ungapped) in 660 aa overlap (4-655:14-595) 10 20 30 40 mKIAA1 DFVPEDQSAATNYQTFR-MNLEKLSKPELLTLFSILEGELEARDLVIEAL : : .:: . . .... ::: :: :.:..:::::::::::::: mKIAA1 TDSASCEPDLSRTPGDTEGATAEAAKKEFDVDTLSKSELRMLLSVMEGELEARDLVIEAL 10 20 30 40 50 60 50 60 70 80 90 100 mKIAA1 KAQHRDTFIEERYGKYNISDPLMALQRDFETLKEKNDSEKQPVCTNPLSVLKAVMKQCKN .:.....::.::::..:..::..:::::.:. .:.:: ::::::::.:.::: .:.. mKIAA1 RARRKEVFIQERYGRFNLNDPFLALQRDYEA--GPGDKEK-PVCTNPLSILEAVMAHCRK 70 80 90 100 110 110 120 130 140 150 160 mKIAA1 MQERMLSQLAAAESRHRKVILDLEEERQRHAQDTAEGDDVTYMLEKERERLTQQLEFEKS ::::: .::.:::::..: ::.:: mKIAA1 MQERMSAQLVAAESRQKK------------------------------------LEMEKL 120 130 140 170 180 190 200 210 220 mKIAA1 QVKKFEKEQKKLSSQLEEERTRHKQLSSMLVLECRKATSKAAEEGQKAGELSLKLDKEKS :.. .:.:.:::...::::: ..:.. ::: ::.. ..:..::.:: :. .:..::. mKIAA1 QLQALEQEHKKLAAHLEEERGKNKHVVLMLVKECKQLSGKVVEEAQKLEEVMAQLEEEKK 150 160 170 180 190 200 230 240 250 260 270 280 mKIAA1 RASKLEEELAAERKRGLQTEAQVEKQLSEFDIEREQLRAKLNREENRTRALKEEVESLKK ..:.:::.:.::..:. :::.:::::::: :::::::::.::: .: ::::....:: mKIAA1 KTSELEEQLSAEKQRSSGMEAQLEKQLSEFDTEREQLRAKLSREEAHTTDLKEEIDKMKK 210 220 230 240 250 260 290 300 310 320 330 340 mKIAA1 LVKDLEAAQQHR---STSEQGREPVTMSRGTATEPPMRVSAFCQTESVQTERSHGSVITK ...... ... . : .. .. : ..::: :. :. :::. : :: . . : mKIAA1 MMEQMKKGSDGKPGLSLPRKTKDKRLASISVATEGPVTRSVACQTDVV-TESTDP--VKK 270 280 290 300 310 350 360 370 380 390 400 mKIAA1 LTDTGLPGPTTAA-YSYAKANGHCDPEIQTTRELTSDSSTENQGPPREKSAVAAQEKPVE : : :.:.. ....:. : : . .:.... : .:. .. . .: mKIAA1 LPLTVPIKPSTGSPLVPTNTKGNVGPSALLIRPGIDRQSSHSDLGPSPPTALPSSANRIE 320 330 340 350 360 370 410 420 430 440 450 460 mKIAA1 NGGCPVGTETPVTMPSHLPSSGSSLSPSSTASSSLTSSPCSSPVLTKRLLGSAASSPGYQ ..: : ..: . . ::. :: .:... . . . . :. .. : . :.. mKIAA1 ENG-PSTGNAP-DLSNSTPSTPSSTAPAAAQTPGTAPQNHSQAPTVHSLHSPCANT---- 380 390 400 410 420 430 470 480 490 500 510 520 mKIAA1 SSYQVGINQRFHAARHKFQSQA-DQDQQASGLQSPPSRDLSPTLLDNSAAKQLARNTVTQ . :.: :..::: .::..: : ::.... :::::::.::: :: .::::::::::: mKIAA1 ---HPGLNPRIQAARFRFQGNANDPDQNGNNTQSPPSRDVSPTSRDNLVAKQLARNTVTQ 440 450 460 470 480 530 540 550 560 570 580 mKIAA1 VLSRFTNQGPIKPVSPNSSPFGTDYRNLASTASPRGDTSHSPTPGKVSSPLSPLSPGIKS .:::::. : . :: .:. :: ::.. : :.. :.:. mKIAA1 ALSRFTS-----PQAGASSRLGV---------SPGGDAGTCPPVGRT---------GLKT 490 500 510 520 590 600 610 620 630 640 mKIAA1 PTIPRAERGNPPPIPPKKPGLTPSQSATTPVTKTHSQASSLAATEDLASSCSPSAVVANG : :..::::::::::::::. . : : . ::. .: : :: ... .: mKIAA1 PGAARVDRGNPPPIPPKKPGLSQTPSPPHPQLR----ASNAGAKVDNKIVASPPSTLPQG 530 540 550 560 570 580 650 mKIAA1 KDV--EILLPTSS : : .: :: mKIAA1 TKVVNEENVPKSSSPQLPPKPSIDLTVAPAGCPVSALATSQVGAWPAGTPGLNQPACSDS 590 600 610 620 630 640 655 residues in 1 query sequences 1768362 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:44:46 2006 done: Mon Mar 27 10:44:47 2006 Scan time: 0.830 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]