FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0259.ptfa, 1569 aa
 vs ./tmplib.26680 library

1767448 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.3952+/-0.00605; mu= 13.9607+/- 0.404
 mean_var=184.4009+/-43.079, 0's: 0 Z-trim: 3  B-trim: 135 in 1/35
 Lambda= 0.0944

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 41, opt: 29, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4037  ( 919 res)   mfj00669                   ( 919)  437   73 3.3e-13


>>mKIAA4037  ( 919 res)   mfj00669                        (919 aa)
 initn: 350 init1: 239 opt: 437  Z-score: 329.4  bits: 73.0 E(): 3.3e-13
Smith-Waterman score: 437;  29.503% identity (31.457% ungapped) in 322 aa overlap (65-374:90-403)

           40        50        60        70        80        90    
mKIAA0 AGRAPPDLVPVGPRAPPSSAMSRNDQEPFLVKFLKSSDNSECFFKALESIKELQSEDYLQ
                                     : ..... ..: ..:::. .:    .  ..
mKIAA4 DSKVAEMSKENLCLASTSNVDEEMPQVEARVIMVQDAGKQEELLKALKEMKVPCVK--MD
      60        70        80        90       100       110         

          100       110       120       130       140       150    
mKIAA0 IITDEEALKIRENDKSLYICDRFSGTVFDHLKQLGCRIVGPQVVTFCMRHQQCVPRAEHP
        . . :.:   : .. . . : :...::. : .  :::::: :.  : .. . .: . .:
mKIAA4 SMEEFESLDSPEFENIFVVTD-FQNSVFNDLYKADCRIVGPPVILNCAQRGEPLPFSCRP
       120       130        140       150       160       170      

          160       170       180          190       200       210 
mKIAA0 VYNMIMSDVTVSCTSLDKDKREEVHKYVQM---MGGRVYRDLNVSVTHLIAGEVGSKKYL
       .:   : ....  :.. :  .::. : : .   ::: . .. : .::::.:. . ..:. 
mKIAA4 LYCTSMLNLVLCFTGFRK--KEELVKLVTLVHHMGGVIRKECNSKVTHLVANCTQGEKFR
        180       190         200       210       220       230    

             220       230       240       250       260       270 
mKIAA0 VAANLKKPILLPSWIKTLWEKSQEKKITKYTDVNMEDFKCPIFLGCIICVTGLNGIHRKT
       ::..:  ::. : ::   ::. .:. .   .:   ..:: : :  ::.   :..  ....
mKIAA4 VAVSLGTPIMKPEWIYKAWERRNEQCFCAAVDDFRNEFKVPPFQDCILSFLGFSDEEKHS
          240       250       260       270       280       290    

             280       290       300         310       320         
mKIAA0 VQQLTAKHGGQYMGQLKMNECTHLIVQEP--KGQKYECARRWNVHCVTLQWFHDSIEKGF
       ....:  .::.:.  .  ..::::::.:   :   .: ...  :  :  .::  ::.   
mKIAA4 MEEMTEMQGGSYL-PVGDERCTHLIVEENTVKDLPFEPSKKLFV--VKQEWFWGSIQMDA
          300        310       320       330         340       350 

     330          340       350       360           370       380  
mKIAA0 CQDESIY---KAETRVEAKMVPDTSTPTAQSNAE----SHTLADVSHISNINGSCVNETM
          :..:   ::.:    : :   :  : .:: .    ..:::..:. ....        
mKIAA4 RAGETMYLYEKANTPELKKSVSLLSLSTPNSNRKRRRLKETLAQLSRETDLSPFPPRKRP
             360       370       380       390       400       410 

            390       400       410       420       430       440  
mKIAA0 FGSTTSKLECSLENLENLDISMFQAPEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRF
                                                                   
mKIAA4 SAEHSLSIGSLLDISNTPESSIHYGETPKSCAKSSRSSTPVPPKQSARWQVAKELYQTES
             420       430       440       450       460       470 




1569 residues in 1 query   sequences
1767448 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:16:01 2006 done: Mon Mar 27 10:16:02 2006
 Scan time:  1.220 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]