FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1676.ptfa, 1373 aa
 vs ./tmplib.26680 library

1767644 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.8816+/-0.00584; mu= 5.3929+/- 0.387
 mean_var=210.8213+/-50.222, 0's: 0 Z-trim: 5  B-trim: 0 in 0/36
 Lambda= 0.0883

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0401  ( 179 res)   mbg07315                   ( 179)  338   56 7.8e-09
mKIAA1546  ( 614 res)   mbg15812                   ( 614)  304   52 3.7e-07


>>mKIAA0401  ( 179 res)   mbg07315                        (179 aa)
 initn: 329 init1: 329 opt: 338  Z-score: 250.9  bits: 55.9 E(): 7.8e-09
Smith-Waterman score: 338;  61.039% identity (61.039% ungapped) in 77 aa overlap (1297-1373:20-96)

       1270      1280      1290      1300      1310      1320      
mKIAA1 QKLASCQVEDERHPEADEPQHPEDDNLPQLDEFWSDSEEIYADPSFGGVAIAPIHGSVLI
                                     .:.:::::. . : ..::::.:: : :.::
mKIAA0            PSKGVVKEEKSGPTVEEEEEELWSDSEHNFLDENIGGVAVAPAHCSILI
                          10        20        30        40         

       1330      1340      1350      1360      1370                
mKIAA1 ECARKELHATTSLRSPKRGVPFRVSLVFYQHKSLNKPNHGFDINKIK             
       ::::.:::::: :..:.:  : :.::::::::.::.::::. . . :             
mKIAA0 ECARRELHATTPLKKPNRCHPTRISLVFYQHKNLNQPNHGLALWEAKMKQLAERARQRQE
      50        60        70        80        90       100         

mKIAA0 EAARLGLGQQEAKLYGKKRKWGGAMVAEPQHKEKKGAIPTRQALAMPTDSAVTVSSYAYT
     110       120       130       140       150       160         

>>mKIAA1546  ( 614 res)   mbg15812                        (614 aa)
 initn: 436 init1: 272 opt: 304  Z-score: 220.8  bits: 52.1 E(): 3.7e-07
Smith-Waterman score: 310;  38.750% identity (44.604% ungapped) in 160 aa overlap (1226-1365:370-528)

        1200      1210      1220      1230        1240             
mKIAA1 LHCTMPSGAHSGANAAAGECTGTVQPAEVAAHPHQSLPTADS--PVH------AEPLTSP
                                     .::: .  :..   : :      :    : 
mKIAA1 PNVHHLATFSPYPTPKMDSHFMGAASRSPYSHPHTDYKTSEHHLPSHTIYSYTAAASGSS
     340       350       360       370       380       390         

      1250              1260      1270      1280          1290     
mKIAA1 SEQLTSNQSNQQ--------LPLLSNSQKLASCQVEDERHPEADEPQHPE----DDNLPQ
       : .   :. :..        :: . : .. :: :        ... ..::    :    :
mKIAA1 SSHAFHNKENDNIANGLSRVLPGF-NHDRTASAQELLYSLTGSSQEKQPEVSGQDAAAVQ
     400       410       420        430       440       450        

        1300      1310      1320      1330      1340      1350     
mKIAA1 LDEFWSDSEEIYADPSFGGVAIAPIHGSVLIECARKELHATTSLRSPKRGVPFRVSLVFY
         :.:::::. . :: .::::::: :::.:::::. :.::::.. .: :. : :.:::.:
mKIAA1 EIEYWSDSEHNFQDPCIGGVAIAPTHGSILIECAKCEVHATTKVNDPDRNHPTRISLVLY
      460       470       480       490       500       510        

        1360      1370                                             
mKIAA1 QHKSLNKPNHGFDINKIK                                          
       .::.:  :.:                                                  
mKIAA1 RHKNLFLPKHCLALWEAKMAEKARKEEECGKNGSDHVSQKNHGKQEKREPTGPQEPSYLR
      520       530       540       550       560       570        




1373 residues in 1 query   sequences
1767644 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:50:44 2006 done: Mon Mar 27 10:50:45 2006
 Scan time:  1.180 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]