FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0183.ptfa, 1175 aa vs ./tmplib.26680 library 1767842 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 10.4345+/-0.00776; mu= -8.0949+/- 0.513 mean_var=340.2188+/-82.771, 0's: 0 Z-trim: 1 B-trim: 0 in 0/36 Lambda= 0.0695 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1838 ( 650 res) mbg11958 ( 650) 385 53 1.8e-07 >>mKIAA1838 ( 650 res) mbg11958 (650 aa) initn: 470 init1: 226 opt: 385 Z-score: 226.5 bits: 53.0 E(): 1.8e-07 Smith-Waterman score: 590; 25.067% identity (29.421% ungapped) in 750 aa overlap (64-805:4-650) 40 50 60 70 80 90 mKIAA0 PAGRATALPPPAPPPPAPPPPARARPAAAAMGVQGFQDYIEKHCPSAVVPVELQKLARGS :::.:.: .. . :: . :....::. mKIAA1 DPIMGVRGLQGFVGSTCPHICTIVNIHELAERH 10 20 30 100 110 120 130 140 150 mKIAA0 LVGGGRQRPPQTPLRLLVDADNCLHRLYGGFYTDWVSGGQWNHMLGYLAALAKACFGGNI :.. : ..::: ::. : . .:: :::: .. : .. : ...: mKIAA1 -----RNKYPGCTPTIVVDAMCCLRYWYTA--ESWVCGGQWREYYCALRNFVAAFTSAGI 40 50 60 70 80 160 170 180 190 200 210 mKIAA0 ELFVFFNGALEKARLHEWVKRQGNERQTAQQIVSHVQNKGTPPPKVWFLPPVCMAHCIRL .:. ::.: .: .. :::::. .. . ..: ....: : . :. : .: :. mKIAA1 KLIFFFDGMVEPGKRDEWVKRRLKNNREISKIFHYIKSKRDQPGRNMFFIPSGLAIFTRF 90 100 110 120 130 140 220 230 240 250 260 270 mKIAA0 ALIRFHVKVAQSIEDHHQEVIGFCRENGFHGLVAYDSDYALCNIPYYFSAHALKLSRNGK :: . .. :... :: .. ... :... :.:: . . ::: : : . mKIAA1 ALKTLGQETFCSLQEADYEVASYGLQHNCLGILGEDTDYLIYDTCPYFSIGDLCL----E 150 160 170 180 190 200 280 290 300 310 320 330 mKIAA0 SLTTSQYLMHEVAKQLDLNPNRFPIFAALLGNHILPDEDLASFHWSLLGPEHPLASLKVR :: : . ... ..: : .:..: :::: : :. . ::... :. ::.: mKIAA1 SLQTIMLCREKLCESLGLRVADLPLLACLLGNDITPESMFESFRYKCLSS---YASVKEN 210 220 230 240 250 340 350 360 370 380 390 mKIAA0 AHQLVLPPCDVVIKAVADYVRNI-HDTSDLDAIAKDVFQHSQSRTDDKVIRFKRAVGYYS : . .: ::.::. .. : ..: .. . . ..:. : . mKIAA1 AGKK-----GNIILAVSDYISKVLH-----------LYQGEKKIEEMLPLGPNKALFYKG 260 270 280 290 300 400 410 420 430 440 450 mKIAA0 ATSKPMPFHP-PHYLARPNPFGMPGMVPPYVPPQMLNIPQTSLQAKPAVPQVPSPGGTPG .:: .: . : . .:. ::. ::... : : ::. .: mKIAA1 VTSYLLPGQKSPWLVQKPK-----GMITD--KQQMVSLNPES---KQEVPMCIDPE-FKQ 310 320 330 340 350 460 470 480 490 500 mKIAA0 QAPY---PYSLSEPALTLDTSGKNLTEQNSYSNIPHEGKHTPLYERSSPINLAQSGSPNH ..: : :..: . .: . .. :. . :. ...:. ..: : . mKIAA1 EVPVCTNPESMQEVPMCMDPEPN---QEASMCTDPESKQEVPM--------CTDSESKPE 360 370 380 390 400 510 520 530 540 550 560 mKIAA0 VDSAYFPGSSTSSSSDNDEGGGGATNHISGNKIGWEKTG-SHAEPLARGDPGDQVKVEGS :.. : :. . : : .... : .: : . . : :. . mKIAA1 VSQYTNPESKQKLPSGID------------TEFNLEALMCTHPE-FKQEDVMDMEPEIKQ 410 420 430 440 570 580 590 600 610 620 mKIAA0 STASSGSQLAEGKGSHMGTVQPIPCLLSMPTRNHMDITTPPLPPVAPEVLRVAEHRHKKG : : :.. ... : . :: : ... .: :: :. .: :... mKIAA1 VTMVSESEILKASD----------C--ASPTSVH-NVVIESVPQVA----RM-HHVHSES 450 460 470 480 490 630 640 650 660 670 680 mKIAA0 LMYPYIFHILTKGEIKIAVSIEDEANKDLPPAALLYRPVRQYVYGVLFSLAESRKKTERL . ...::..:::. . ..::: .. :: :..:::::: ::..:.. .. .: mKIAA1 YL---VYNILSSGEIECSNTLEDELDQALPSQAFIYRPVRQRVYALLLGDWKDGAST--- 500 510 520 530 540 690 700 710 720 730 740 mKIAA0 AFRKNRLPPEFSPLIIKEWAAYKGKSPQTPELVEALAFR-EWTCPNLKRLWLGKAVEDKN .: ..::: .: :.: . :.::. : . . :.:. :::.. . mKIAA1 -----------GP-VVKEWFVYPGNSLKHPDLVRPLQMTVQGGTPSLEVLWLSQEPAVQA 550 560 570 580 590 750 760 770 780 790 800 mKIAA0 RRMRAFLACMR-SDTPAMLNPANVPTHLMVLCCVLRYMVQWPGARILRRQELDAFLAQAL .:. ..:::. :.. :. .. : : .:::.: :. :.. .... :. :: mKIAA1 QRLDTLLACFNLSSSREELQAVESP--LRALCCLLIYLFVQVHAELTVLYDIESPLSLAL 600 610 620 630 640 650 810 820 830 840 850 860 mKIAA0 SPKLYEPDQLQELKIDNLDPRGIQLSALFMSGVDMALFANDACGQPIPWEHCCPWMYFDG 1175 residues in 1 query sequences 1767842 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:13:59 2006 done: Mon Mar 27 10:14:01 2006 Scan time: 1.080 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]