FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1417.ptfa, 1167 aa vs ./tmplib.26680 library 1767850 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.7713+/-0.0057; mu= 14.6129+/- 0.380 mean_var=163.5950+/-40.038, 0's: 0 Z-trim: 9 B-trim: 263 in 2/34 Lambda= 0.1003 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0469 ( 604 res) mpg00435 ( 604) 177 38 0.0042 mKIAA0795 ( 588 res) mfj41092 ( 588) 170 37 0.0083 >>mKIAA0469 ( 604 res) mpg00435 (604 aa) initn: 243 init1: 118 opt: 177 Z-score: 148.1 bits: 38.4 E(): 0.0042 Smith-Waterman score: 177; 28.931% identity (30.667% ungapped) in 159 aa overlap (575-731:32-183) 550 560 570 580 590 600 mKIAA1 LSNLSSRLEGVRLENEKINVIAKKTGNKLKLSQKKC--SFLYDVTMKSVDGKEFSCHKCV ::: . .:: :::.... :..: :. : mKIAA0 DPQLRVMERPAPLAVLPFSDPAHALSLLRGLSQLRAERKFL-DVTLEAAGGRDFPAHRAV 10 20 30 40 50 60 610 620 630 640 650 660 mKIAA1 LCARLEYFHSMLSRSWIEASSCAALEMPIQSEILKVILDYLYTDEAVVIKESQNVDFVCS : : ::..:.. . :. . . . ..:...::. :: ...: ..:.. mKIAA0 LAAASPYFRAMFAGQLRESRAERVRLHGVPPDMLQLLLDFSYTGRVAV--SGDNAE---P 70 80 90 100 110 670 680 690 700 710 720 mKIAA1 VLVVADQLLITRLKEICEVALTENLTLKNAAMLLEFAALYNAGQLKLSCLQFIGLNMAAL .: .:: : . .:: : . : ..: : : . .:: .. . : . .:: : .. mKIAA0 LLRAADLLQFPAVKEACGAFLQQQLDLANCLDMQDFAEAFSCSGLASAAQRFI-LRHVGE 120 130 140 150 160 170 730 740 750 760 770 780 mKIAA1 LEARSLDVLSEDVLKDLSIFYRKMIPAMERRVITPYQDGPDISSMQVEDGEVFFKEEINM : :..:. : mKIAA0 LGAEQLERLPLARLLRYLRDDGLCVPKEEAAYQLALRWVRADPPRRAPHWPQLLEAVRLP 180 190 200 210 220 230 >>mKIAA0795 ( 588 res) mfj41092 (588 aa) initn: 139 init1: 80 opt: 170 Z-score: 142.7 bits: 37.4 E(): 0.0083 Smith-Waterman score: 176; 27.313% identity (31.313% ungapped) in 227 aa overlap (516-740:4-203) 490 500 510 520 530 540 mKIAA1 TVNCHVDDKQKSAFEVYRSNQAHTLSERQKSKPKSSKK-GKGVGDDDPVRMLQSVAKKFG ..: . .. :: : .: .. :..... :. mKIAA0 SLLARPAQLRRPGKMV--EDGAEELEDLVH-FS 10 20 30 550 560 570 580 590 600 mKIAA1 LSNLSSRLEGVRLENEKINVIAKKTGNKLKLSQKKCSFLYDVTMKSVDGKEFSCHKCVLC .:.: :: :: : .. : : : :::.: : : :: :. :: mKIAA0 VSELPSRGYGVMEE-------IRRQG-------KLC----DVTLKIGDHK-FSAHRIVLA 40 50 60 70 610 620 630 640 650 660 mKIAA1 ARLEYFHSMLSRSWIEASSCAALEMPIQSEILKVILDYLYTDEAVVIKESQNVDFVCSVL : . :::.:.. . .: .. . . .. :...... :. . .. ..:::. :.: mKIAA0 ASIPYFHAMFTNDMMECKQDEIVMQGMDPSALEALINFAYNGNLAI--DQQNVQ---SLL 80 90 100 110 120 670 680 690 700 710 720 mKIAA1 VVADQLLITRLKEICEVALTENLTLKNAAMLLEFAALYNAGQLKLSCLQFIGLNMAAL-L . :. : . .:. : . : : : :: . .:: . . : . .:: ... . : mKIAA0 MGASFLQLQSIKDACCTFLRERLHPKNCLGVRQFAETMMCAVLYDAANSFIHQHFVEVSL 130 140 150 160 170 180 730 740 750 760 770 780 mKIAA1 EARSLDVLSEDVLKDLSIFYRKMIPAMERRVITPYQDGPDISSMQVEDGEVFFKEEINME . : . ::::. .: mKIAA0 SEEFLALPLEDVLELVSRDELNVKSEEQVFEAALAWVRYDREQRGPCLPELLSNIRLPLC 190 200 210 220 230 240 1167 residues in 1 query sequences 1767850 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:44:13 2006 done: Mon Mar 27 10:44:14 2006 Scan time: 1.110 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]