FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1064.ptfa, 912 aa vs ./tmplib.26680 library 1768105 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 14.7964+/-0.0113; mu= -28.4267+/- 0.746 mean_var=711.7761+/-172.234, 0's: 0 Z-trim: 11 B-trim: 0 in 0/36 Lambda= 0.0481 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA2035 ( 623 res) mnh10008 ( 623) 683 63 1.7e-10 mKIAA1172 ( 1200 res) mfj66157 (1200) 334 39 0.0051 mKIAA0522 ( 646 res) mbp09103 ( 646) 323 38 0.0056 mKIAA1870 ( 857 res) mtj02754 ( 857) 323 38 0.0068 >>mKIAA2035 ( 623 res) mnh10008 (623 aa) initn: 712 init1: 331 opt: 683 Z-score: 281.0 bits: 62.7 E(): 1.7e-10 Smith-Waterman score: 807; 32.584% identity (36.511% ungapped) in 623 aa overlap (318-911:39-623) 290 300 310 320 330 340 mKIAA1 GVRFPGPGGPSGPMGPGPNMGPPGPMGGPMHPDMHPD--MHPDMHPDMHPD--MHPDMHP . :..:. : . :: : : .. mKIAA2 HSSPASLYQQMPSEMQRSADSESMQGSAEFYDDYYPQHAAHNFQPPDNSADEMWHEEFAQ 10 20 30 40 50 60 350 360 370 380 390 400 mKIAA1 DMHPDMHPDMPMGPGMNPGPPMGPGGPPMMPYGPGDSPHSGMMPPIPPAQNFYENFYPQQ .. : . .: : : . : . :. : . . ... :: .: . :. : mKIAA2 QQPPIARDTAHLGSGPNSSSRM-TSHCPLSASGLPPAVQRALF--IPLTQRYQEDEEPA- 70 80 90 100 110 120 410 420 430 440 450 460 mKIAA1 EGMEMEPGLVGDAGDTGNWYSSDEDEGGSSVTSILKTLRQQTSSRPQASVGEPSSSGLGD : . . . . ::.:::::.:.: ::.: :::.::..::.. . .. : : mKIAA2 -GTQPHRASSKEEDDTANWYSSSEEEEGSGVKSILRTLQKQTGTLRNQQLPPTELSVPTD 130 140 150 160 170 180 470 480 490 500 510 mKIAA1 PRLQKGHPTGSRLSDPRLSRDPRLSRHAETSGGSGPGD-SGPSDPRLAR----ALPTSKA ::: : . ... :::: :: . . : : : ::. : : :.: mKIAA2 PRLAKEKRKRNQVVDPRLRTVPR--QDIKKPHESVPVDLRLVWDPKKLRGNGGAPGGSSA 190 200 210 220 230 240 520 530 540 550 560 570 mKIAA1 EGS---LHSSPAGPSSSKGQPPAEEEEGERALREKAVNIPLDPLPGHPLRDPRSQLQQFS .:. :. . :: . .. . ..:..:: ::::: :::: :: :.::::::.::: mKIAA2 RGAEFDLRHTNAGANHKSKRREDDDEDSERELREKAFLIPLDSSPGIVLQDPRSQLRQFS 250 260 270 280 290 300 580 590 600 610 620 630 mKIAA1 HIKKDVTLSKPSFARTVLWNPEDLIPLPIPKQDVPPVPAALQSLPAL--DPRLHRSTPPG ::: :. :.::.::. ..: ::::.:.:.:: : :: . :: : : ::.: . mKIAA2 HIKMDIILNKPNFAKHIVWAPEDLLPVPLPKPD--PVSSINLPLPPLIADQRLNRLW--N 310 320 330 340 350 640 650 660 670 680 mKIAA1 PPNTRQRPGSTDPSTSGSNLPDFELLSR---ILKTVNVNTPG------QSEKPSDPRVRK . .: : ::..... . : : . .. .... : . .: :::... mKIAA2 TKSDHQGALSLDPTSAAKA--KLSLTHREGCLEQSGDLHSSGGKLGDPRLQKNFDPRLHR 360 370 380 390 400 410 690 700 710 720 730 mKIAA1 TPTDPRLQKPADPVAASRAAKPCPTEASPPAASPSGDSSP----PATAP-YDPRVLAAGG :. : : .::.: : :: : :. ..: .: : : :. :.. : mKIAA2 LPNTESHQVTAKDSHSSRSALPLARWN--PALSQSSTAAPINVASVTPPLYAPK-LSSEG 420 430 440 450 460 470 740 750 760 770 780 790 mKIAA1 LGQGSSSGQSSVLSGISLYDPRTPNAGGKTAEPASDTSAQPKGPEGNGKGSASKAKEPPF : :.:: :::::::::::: . :. .: : :. :... :. : mKIAA2 LPPGTSS---SVLSGISLYDPR--DKGSLSAMELSTISS--------GENTESQKKSG-- 480 490 500 510 800 810 820 830 840 850 mKIAA1 VRKSALEQPETGKASTDGATATDRYNSYNRPRPKATAAPTAASSTPPPEGATPQPGVHNL ...: .:: :.. . :... . : : .:... : .::.: mKIAA2 LKNSDKNQPSPGEVIVPQNTTANLEVPVDGPVDMQTDILRSADKVQVP-------AVHSL 520 530 540 550 560 570 860 870 880 890 900 910 mKIAA1 PVPTLFGTVKPAPKTGTGSPFAGN-SPAREGEQDAGSLKDVFKGFDPTASPFCQ :. .: : ..: . . :. ::. . : : ::.::: ::::::::: mKIAA2 PIQALTGLLRPPYSDPRQAREPGQASPTPDEETDDKPLKEVFKTFDPTASPFC 580 590 600 610 620 >>mKIAA1172 ( 1200 res) mfj66157 (1200 aa) initn: 155 init1: 155 opt: 334 Z-score: 146.5 bits: 38.8 E(): 0.0051 Smith-Waterman score: 387; 24.507% identity (30.289% ungapped) in 812 aa overlap (163-891:259-998) 140 150 160 170 180 190 mKIAA1 HGDFPCKLYHTTGNCINGDDCMFSHDPLTEETRELLDKMLADDAEAGAEDEKEVEELKKQ : . .:: : : . : : ::. ::. mKIAA1 QPQSPALDSAVMAQVQAITAQLKTAPTQPPEQKTAFDKKLLDRFDYDDEPEA-VEDSKKE 230 240 250 260 270 280 200 210 220 230 240 mKIAA1 GINPLPKPPPGVGLLPTPPRPPGPPAPTSPNGRPMQGGPPPPPPPPP---PPPGPPQMSL . ..: . : : .:. .. :. .. :::: : : : : . mKIAA1 DAAAIST----AALATAAPPAPTAATPAVATAVPVPSATSPPPPQTPFGYPGDGVQQPAC 290 300 310 320 330 340 250 260 270 280 290 300 mKIAA1 PTHEPLS---PQQL--QQDMYNKKIPSLFEIVVRPTGQLAEKLGVRFPGPGGPSGPMGPG :. .. :... ::: .....: . :.::. :: : :.: : mKIAA1 TQHQSMDQFQPRMMPIQQDTMHHQVP------LPPNGQM--------PGFGLLSAP-PPF 350 360 370 380 310 320 330 340 350 mKIAA1 PNMGPPG-PMGGPMHPDM-HPDM-HPDM-HPDM-HPDM-HPDM-HPDM-HPDM-HPDMPM : : :: :. : .: . .: : .: : .: : .: : .: : .: . .: : .: ::. mKIAA1 PPMPQPGMPQPGMAQPGLAQPGMAQPTMPQPGMPQPGMPQPGMAQPGLAQPGMAQPGMPQ 390 400 410 420 430 440 360 370 380 390 400 410 mKIAA1 GPGMNPGPPMGPGGPPMMPYGPGDSPHSGMMPPIPPAQNFYENFYPQQEGMEMEPGLVGD :.: : : : : : : :: :: ::. :. : .: ::.: ..: mKIAA1 -PAM-PQPAM-PQ-PGMAQ--PGVSP----APPVQPT--FQSTFQPQNEPHSQKPH---- 450 460 470 480 490 420 430 440 450 460 470 mKIAA1 AGDTGNWYSSDEDEGGSSVTSILKTLRQQTSSRPQASVGEPSSSGLGDPRLQKGHPTGSR . . . :: . . . .. .:: .. . : :: .... . : mKIAA1 -------QQVEMEVEQPCVTEVKRHVPESRKSRSRSPKRRRSRSG------SRSRRSRHR 500 510 520 530 480 490 500 510 520 mKIAA1 LSDPRLSRDPRLSRHAETSGGSGPGDSGPSDPRLARALPTSKAE-----------GSLHS : : ::: : ::. : .. : : ..:: :.: :.: . mKIAA1 RSRSR-SRDRR--RHSPRSRSQERRDREKERERRQKGLPQIKSETASVCSTTLWVGQLDK 540 550 560 570 580 590 530 540 550 mKIAA1 SPA-----------GPSSSKGQ-PP--------AEEEEGERALREKA-----VNIPLDPL . :: : .. :: ...... :::.. . :: . mKIAA1 RTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKI 600 610 620 630 640 650 560 570 580 590 600 mKIAA1 PGHPLRDPRSQLQQFSHIKKDVTLSK---------PSFARTVLWNPEDLIP--LPIPKQD . ... .:. .. :: :: . . . . : : :::. mKIAA1 AWALNKGIKADYKQYWDVELGVTYIPWDKVKAEELESFCEGGMLDSDTLNPDWKGIPKKP 660 670 680 690 700 710 610 620 630 640 650 660 mKIAA1 VPPVP----AALQSLPALDPRLHRSTP-PGPPNTRQRPGSTDPSTSGSNLPDFELLSRIL : : . ..: . . .: : :: : .. : . : ... . mKIAA1 DNEVAQNGGAETSHTEPVSP-IPKPVPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQ 720 730 740 750 760 770 670 680 690 700 710 720 mKIAA1 KTVNVNTPGQSEKPSDPRVRKTPTDPRLQKPA-DPVAASRAAKPCPTEASPPAASPSGDS . . :. : : : : . .:. .:. . : : . :: .: . mKIAA1 PPAFTPPLGMPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLP-P--GPPPPITPPVSI 780 790 800 810 820 830 730 740 750 760 770 780 mKIAA1 SPPATAPYDPRVLAAGGLGQGSSSGQSSVLSGISLYDPRTPNAGGKTAEPASDTSAQPKG :: : : . :..:. :. . ::.:. . : : : .: :. :. .. :: . mKIAA1 PPPHTPPISIPNLVSGARGN-AESGDSAKMYG-SAGPPAAP-----TSLPTPPVT-QPVS 840 850 860 870 880 790 800 810 820 830 mKIAA1 PEGNGKGSASKAKEPPFVRKSALEQPETGK-ASTDGATATDRYNSYNRPR-------PKA :. .: : : . .:. : :: .. : .: .. :. : mKIAA1 LLGT-QGVAPG----PVI---GLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPMMPPR 890 900 910 920 930 840 850 860 870 880 mKIAA1 TAAPTAASSTPPP-EGATPQPGVHNL--PVPTLFGTVKPA--PKTGTGSPFAGNSPAREG : ::: :. .: :.. : : :.:. : : .: : : :.: mKIAA1 PMPPHMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGASEDRDG 940 950 960 970 980 990 890 900 910 mKIAA1 EQDAGSLKDVFKGFDPTASPFCQ .:. mKIAA1 RQQQPQQQPPPQQQQQQQQPQQPPQQSPSQQPAPAQQQPPQFRNDSRQQFNSGRDQERFG 1000 1010 1020 1030 1040 1050 >>mKIAA0522 ( 646 res) mbp09103 (646 aa) initn: 350 init1: 127 opt: 323 Z-score: 145.8 bits: 37.7 E(): 0.0056 Smith-Waterman score: 326; 35.266% identity (41.011% ungapped) in 207 aa overlap (192-391:431-615) 170 180 190 200 210 220 mKIAA1 EETRELLDKMLADDAEAGAEDEKEVEELKKQGINPLPKPPPGVGLLPTPPRPPGPPAPTS :: : : ::: :: : .:: :: : . mKIAA0 HHHHHGHSHGGLGVLPDGQSKLQALHAQYCQG--PGPAPPP---YLP-PQQPPLPPPPQQ 410 420 430 440 450 230 240 250 260 270 280 mKIAA1 PNGRPMQGGPPPPPPPPPPPPGPPQMSLPTHEPLSPQQLQQDMYNKKIPSLFEIVVRPTG : : : : :::: :: :: . . .: :. : . : : .: mKIAA0 PPPLP-QLGSIPPPPASAPPVGPHRH-FHAHGPVPGPQHYTLGRPGRAPR------RGAG 460 470 480 490 500 290 300 310 320 330 mKIAA1 ---QLAEKLGVRFP--GPGGPSGPMGPGPNMGPPGPMGGPMH--PDMHPDMHPDMHPDMH :.: . : : : : .: ..:.:. ::. :: : . ::.: : mKIAA0 GHPQFAPH-G-RHPLHQPTSPLPLYSPAPQH-PPAHKQGPKHFIFSHHPQMMPAAGAAGG 510 520 530 540 550 560 340 350 360 370 380 390 mKIAA1 PDMHPDMHPDMHPDMHPDMPMGPGMNPGPPMGPGGPPMMPYGPGDSPHSGMMPPIPPAQN : .: :: ::. :..: .: :: :. ::. : .: .::: . :: : mKIAA0 PGSRPPGGSYSHPH-HPQSPLSP-HSPIPPH-PSYPPLPPPSP-HTPHSPL-PPTSPHGP 570 580 590 600 610 400 410 420 430 440 450 mKIAA1 FYENFYPQQEGMEMEPGLVGDAGDTGNWYSSDEDEGGSSVTSILKTLRQQTSSRPQASVG mKIAA0 LHASGPPGTANPPSANPKAKPSRISTVV 620 630 640 >>mKIAA1870 ( 857 res) mtj02754 (857 aa) initn: 214 init1: 132 opt: 323 Z-score: 144.3 bits: 37.9 E(): 0.0068 Smith-Waterman score: 383; 24.926% identity (29.391% ungapped) in 678 aa overlap (198-830:29-648) 170 180 190 200 210 220 mKIAA1 LDKMLADDAEAGAEDEKEVEELKKQGINPLPKPPPGVGLLPTPPRPPGPPAPTS-PNGRP : : :.: : : : :::. . :. : mKIAA1 EPGIVGEKGDRGVMGPPGAPGPKGSMGHPGTPGGIGN-PGEPGPWGPPGSRGLPGMRG 10 20 30 40 50 230 240 250 260 270 280 mKIAA1 MQG--GP--PPPPPPPPPPPGPPQMSLPTHEPLSP-QQLQQDMYNKKIPSLFEIVVRPTG .: :: : : : : .: .: :: ... . : . :.: mKIAA1 AKGHRGPRGPDGPAGEQGSKGLKGRVGPRGRPGQPGQQGAAGERGHSGAKGFLGIPGPSG 60 70 80 90 100 110 290 300 310 320 330 mKIAA1 QLAEKLGVRFPGPGGPSGPMGPGPNMGPPGPMGGPMHPDMHPD--MHPDMHPDMHPDMHP . : :: ::.::.:: .::: :: :. .: . : :. :. : : . mKIAA1 PPGAKGLPGEPGSQGPQGPVGPPGEMGPKGPPGAVGEPGLPGDSGMKGDLGPLGPPGEQG 120 130 140 150 160 170 340 350 360 370 380 390 mKIAA1 DMHPDMHPDMHPDM-PMGP-GM--NPGPPMGPGGPPMMPYGPGDSPHSGMMPPIPPAQNF . .: .. : :.:: :. . : : :: : : . ..: : ::. . mKIAA1 LIGQRGEPGLEGDHGPVGPDGLKGDRGDP-GPDGEHGEKGQEGLKGEDG--SPGPPGITG 180 190 200 210 220 230 400 410 420 430 440 450 mKIAA1 YENFYPQQEGMEMEPGLVGDAGDTGNWYSSDEDEGGSSVTSILKTLRQQTSSRPQASVGE : .:: .:: :. :. : .:... . : . . : :: mKIAA1 V----PGREG---KPGKQGEKGQRGA-------KGAKGHQGYLGEM-----GIP----GE 240 250 260 270 460 470 480 490 500 510 mKIAA1 PSSSGLGDPRLQKGH--PTGS--RLSDPRLSRDPRLSRHAETSGGSGP-GDSGPSDPRLA :. : :. ..: :::. :.. . .: :. . .: .:: : ::. . mKIAA1 PGPPGTPGPKGSRGTLGPTGAPGRMGA---QGEPGLAGYNGHKGITGPLGPPGPKGEKGD 280 290 300 310 320 520 530 540 550 560 mKIAA1 RALPTSKAEGS----LHSSPAGPSSSKGQP--PAEE-EEGERALREKAVNIPLDPLPGHP .. .:.:: .:.: ...:.: :. .:: ..:: . . . :::: mKIAA1 QG-EDGKTEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGEPGQ---QGQPGHP 330 340 350 360 370 380 570 580 590 600 610 mKIAA1 LRDPRSQLQQFSHIKKDVTLSKPSFAR-TVLWNPEDLIPLPIPKQDV----PPVPAALQS ::.. . .. .::. : . . . : :: :. : : :. .. mKIAA1 --GPRGRPGPKGSKGEEGPKGKPGKAGPSGRRGTQGLQGLPGPRGVVGRQGPEGTAGSDG 390 400 410 420 430 440 620 630 640 650 660 mKIAA1 LPALDPRLHRST---------PPGPPNTRQRPGSTD-PSTSGSNLPDFELLSRILKTVNV .:. : : . : :: . : :: . :...: : :. : . mKIAA1 IPGRDGRPGYQGDQGNDGDPGPVGPAGRRGNPGVAGLPGAQGP--PGFKGESGL------ 450 460 470 480 490 670 680 690 700 710 720 mKIAA1 NTPGQSEKPSDPRVRKTPTDPRLQKPADPVAASRAAKPCPT--EASPPAASPSGDSSPPA ::: :. : :. :.. . ..: . . : .:. : ..::. mKIAA1 --PGQLGPPG-----KRGTEGGTGLPGNQGEPGSKGQPGDSGEMGFPGVAGLFGPKGPPG 500 510 520 530 540 730 740 750 760 770 780 mKIAA1 TAPYDPRVLAAGGLGQGSSSGQSSVLSGISLYDPR-TPNAGGKTAEPASDTSAQ-PKGPE . : : . :. .... .. : :. : . .: . : :.:: mKIAA1 DIGFKG---IQGPRGPPGLMGKEGIIGPPGMLGPSGLPGPKGDRGS-RGDLGLQGPRGPP 550 560 570 580 590 600 790 800 810 820 830 840 mKIAA1 GNGKGSASKAKEPPFVRKSALEQPETGKA--STDGATATDRYNSYNRPRPKATAAPTAAS : .: . ::. . ..: . : : . : .. : ..:. : mKIAA1 GP-RGRPGPPG-PPW-HPIQFQQDDLGAAFQTWMDAQGAVRSEGYSYPDQLALDQGGEIF 610 620 630 640 650 660 850 860 870 880 890 900 mKIAA1 STPPPEGATPQPGVHNLPVPTLFGTVKPAPKTGTGSPFAGNSPAREGEQDAGSLKDVFKG mKIAA1 KTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQRMADGTYWVDPNLGCSSDTIEVSCN 670 680 690 700 710 720 912 residues in 1 query sequences 1768105 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:35:10 2006 done: Mon Mar 27 10:35:12 2006 Scan time: 1.020 Display time: 0.200 Function used was FASTA [version 3.4t11 Apr 17, 2002]