FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1494.ptfa, 914 aa vs ./tmplib.26680 library 1768103 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.2210+/-0.00784; mu= -1.3041+/- 0.519 mean_var=370.9733+/-88.283, 0's: 0 Z-trim: 6 B-trim: 2 in 1/35 Lambda= 0.0666 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mFLJ00204 ( 618 res) msp00191 ( 618) 679 80 1.3e-15 >>mFLJ00204 ( 618 res) msp00191 (618 aa) initn: 1495 init1: 389 opt: 679 Z-score: 372.4 bits: 79.6 E(): 1.3e-15 Smith-Waterman score: 1523; 43.950% identity (54.296% ungapped) in 719 aa overlap (230-913:1-617) 200 210 220 230 240 250 mKIAA1 GVHGFFPTNFVQIIKPLPQPPPQCKALYDFEVKDKEADKDCLPFAKDDVLTVIRRVDENW :.::.. ::::: :.::.:::::::::.:: mFLJ00 EMKDRDQDKDCLTFTKDEVLTVIRRVDDNW 10 20 30 260 270 280 290 300 mKIAA1 AEGMLADKIGIFPISYVEFNSAAKQLIEWDK--PPV-------------PGVDTAECPSA :::::.:::::::. :::.:..:::::: :: : . :.. .. :. mFLJ00 AEGMLGDKIGIFPLLYVELNDSAKQLIEMDKLCPAATTAYNYDALLSSDPSTVASVAPGP 40 50 60 70 80 90 310 320 330 340 350 360 mKIAA1 TAQSTSA----SKHPDTKKNTRKRHSFTSLTMANKSSQGSQNRHSMEISPPVLISSSNPT : .:..: ... :.:::..::::::.:....::::....::::::: :::::::.: mFLJ00 TLSSSGAVSAFQRRVDSKKNAKKRHSFTALSVTHKSSQAASHRHSMEISAPVLISSSDPR 100 110 120 130 140 150 370 380 390 400 410 420 mKIAA1 AAARISELSGLSCSAPSQVHISTTGLIVTPPPSSPVTTGPAFTFPSDVPYQAALGSMNPP :::::.::. :::..:.: :: ..::. :. .: mFLJ00 AAARIGELAHLSCTVPTQ-------------DSS--SAGPV---PTALPR---------- 160 170 180 430 440 450 460 470 480 mKIAA1 LPPPPLLAATVLASTPSGATAAVAAAAAAAAAAGMGPRPVMGSSEQIAHLRPQTRPSVYV :::.:. ::.:. : .::. mFLJ00 -------------------------AAAVAGEQGMSPKV-------------QLPLNVYL 190 200 490 500 510 520 530 540 mKIAA1 AIYPYTPRKEDELELRKGEMFLVFERCQDGWYKGTSMHTSKIGVFPGNYVAPVTRAVTNA :.: : :.:.::::::::::. :.:.:::::.::.:..:. ::::::::.::.: mFLJ00 ALYAYKPQKNDELELRKGEMYRVLEKCQDGWFKGASLKTGVSGVFPGNYVTPVSR----- 210 220 230 240 250 550 560 570 580 590 mKIAA1 SQAKVSMSTAGQASRGVTMVSPSTAGGPTQKPQGNGVAGNP-----SVVPTAVVS--AAH : . :: .: :: . : : :.: ..: :..: .... : mFLJ00 ----VPGGGAGLPWNNVLGGSPLAKGMATIMHPGGGSLSSPATAARSALPLTTLQDHMQH 260 270 280 290 300 310 600 610 620 630 640 mKIAA1 IQTS-PQAKVLLHMSGQMTVNQARNAVRTVAAHSQ----ERPTAAVTPIQVQNAACLGPA :: : .. : : :.: :..:: ... .:.:.. .::::.:.:...:.. : mFLJ00 PATSLPTGSCLRH-SAQPTASQAGDTTIPTATHASAQALDRPTATVSPLRTQTSPSRLP- 320 330 340 350 360 370 650 660 670 680 690 700 mKIAA1 SVGLPHHSLASQPLPPMAGPAAHGAAVSISRTNAPMACAAGASLASPNMTSAMLETEPSG :.:: .:.:: : . .:: : :.. ::.: .. ::...: : : .: mFLJ00 STGLRPRSVAS-PQHGQQSPAQM-----CPRPAIPFTSAASA-ITPPNVSAANLSGEVGG 380 390 400 410 420 710 720 730 740 750 760 mKIAA1 RTVTILPGLPTSPESAASACGNSSAGKPD--KDSKKEKK-GLLKLLSGASTKRKPRVSPP .. :: : : .. ::: :. ::::: ::::::.:::::.: : : mFLJ00 TPIS---GLST-PSLINTGF------KPDDKKNEKKEKKSGLLKLLAGASTKKKSRSPPS 430 440 450 460 470 770 780 790 800 810 820 mKIAA1 ASPTLDVELGAGEAPLQGAVGPEL-PLGGSHGRVGSCPTDGDGPVAAGTAALAQDAFHRK .::: : . .: .. ::::.:::. :: :::.:::: ... : : : ::: mFLJ00 VSPTHDPQ-SAMDTSLQGAMGPEVSPLT-VHGRAGSCPIESEMQGAIGLEPL-----HRK 480 490 500 510 520 830 840 850 860 870 880 mKIAA1 TSSLDSAVPIAPPPRQACSSLGPVMNEARPVVCERHRVVVSYPPQSEAELELKEGDIVFV ..::: ..: ::: :.. . : .:. ::.:::::::::::::.:::::::::: mFLJ00 AGSLDLNFSLSPS-RQATLSMASIRPEPKPLPRERYRVVVSYPPQSEAEIELKEGDIVFV 530 540 550 560 570 580 890 900 910 mKIAA1 HKKREDGWFKGTLQRNGKTGLFPGSFVENI :::.:::::::::::::.::::::::::.. mFLJ00 HKKHEDGWFKGTLQRNGRTGLFPGSFVESF 590 600 610 914 residues in 1 query sequences 1768103 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:46:33 2006 done: Mon Mar 27 10:46:34 2006 Scan time: 1.000 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]