# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpm09300.fasta.nr -Q ../query/mKIAA0399.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0399, 110 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921483 sequences Expectation_n fit: rho(ln(x))= 4.5968+/-0.000176; mu= 6.9160+/- 0.010 mean_var=51.2044+/-10.073, 0's: 38 Z-trim: 38 B-trim: 0 in 0/66 Lambda= 0.179234 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|22766839|gb|AAH37463.1| Zzef1 protein [Mus musc ( 210) 676 182.0 3e-44 gi|26342931|dbj|BAC35122.1| unnamed protein produc ( 283) 676 182.1 3.9e-44 gi|187466076|emb|CAQ51961.1| zinc finger, ZZ-type ( 524) 676 182.2 6.4e-44 gi|71534076|gb|AAH99976.1| Zzef1 protein [Mus musc ( 698) 676 182.3 8.1e-44 gi|148680752|gb|EDL12699.1| mCG125423, isoform CRA (2396) 676 182.6 2.2e-43 gi|148680753|gb|EDL12700.1| mCG125423, isoform CRA (2429) 676 182.6 2.3e-43 gi|56206448|emb|CAI25190.1| zinc finger, ZZ-type w (2891) 676 182.7 2.6e-43 gi|148887333|sp|Q5SSH7.2|ZZEF1_MOUSE RecName: Full (2924) 676 182.7 2.6e-43 gi|109488501|ref|XP_237787.4| PREDICTED: similar t (2964) 676 182.7 2.7e-43 gi|45595581|gb|AAH67099.1| ZZEF1 protein [Homo sap ( 568) 656 177.1 2.5e-42 gi|119610863|gb|EAW90457.1| hCG1986053, isoform CR (2462) 656 177.4 8.3e-42 gi|73747881|ref|NP_055928.3| zinc finger, ZZ type (2961) 656 177.5 9.6e-42 gi|148887332|sp|O43149.5|ZZEF1_HUMAN RecName: Full (2961) 656 177.5 9.6e-42 gi|114665781|ref|XP_511813.2| PREDICTED: zinc fing (3016) 656 177.5 9.8e-42 gi|73955255|ref|XP_855649.1| PREDICTED: similar to (2893) 648 175.4 4e-41 gi|73955257|ref|XP_546554.2| PREDICTED: similar to (2963) 648 175.4 4e-41 gi|109112827|ref|XP_001117691.1| PREDICTED: simila (3069) 648 175.4 4.2e-41 gi|194675936|ref|XP_869342.3| PREDICTED: similar t (2962) 630 170.8 1e-39 gi|194217506|ref|XP_001502762.2| PREDICTED: simila (2968) 624 169.2 3e-39 gi|189519109|ref|XP_001922332.1| PREDICTED: zinc f (3016) 417 115.7 3.9e-23 gi|210109498|gb|EEA57370.1| hypothetical protein B (2963) 277 79.5 3.1e-12 gi|156227211|gb|EDO48016.1| predicted protein [Nem ( 271) 262 75.0 6.3e-12 gi|47223744|emb|CAF98514.1| unnamed protein produc (3008) 254 73.5 1.9e-10 gi|221124747|ref|XP_002160671.1| PREDICTED: simila ( 470) 219 64.0 2.2e-08 >>gi|22766839|gb|AAH37463.1| Zzef1 protein [Mus musculus (210 aa) initn: 676 init1: 676 opt: 676 Z-score: 950.7 bits: 182.0 E(): 3e-44 Smith-Waterman score: 676; 100.000% identity (100.000% similar) in 102 aa overlap (9-110:109-210) 10 20 30 mKIAA0 SIPVLAPSSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP :::::::::::::::::::::::::::::: gi|227 WLVGVACRQTGHQRLKAIHLLLRIVQCCSHSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP 80 90 100 110 120 130 40 50 60 70 80 90 mKIAA0 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|227 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY 140 150 160 170 180 190 100 110 mKIAA0 PNKATRLWNVEC :::::::::::: gi|227 PNKATRLWNVEC 200 210 >>gi|26342931|dbj|BAC35122.1| unnamed protein product [M (283 aa) initn: 676 init1: 676 opt: 676 Z-score: 948.8 bits: 182.1 E(): 3.9e-44 Smith-Waterman score: 676; 100.000% identity (100.000% similar) in 102 aa overlap (9-110:182-283) 10 20 30 mKIAA0 SIPVLAPSSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP :::::::::::::::::::::::::::::: gi|263 WLVGVACRQTGHQRLKAIHLLLRIVQCCSHSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP 160 170 180 190 200 210 40 50 60 70 80 90 mKIAA0 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY 220 230 240 250 260 270 100 110 mKIAA0 PNKATRLWNVEC :::::::::::: gi|263 PNKATRLWNVEC 280 >>gi|187466076|emb|CAQ51961.1| zinc finger, ZZ-type with (524 aa) initn: 676 init1: 676 opt: 676 Z-score: 944.8 bits: 182.2 E(): 6.4e-44 Smith-Waterman score: 676; 100.000% identity (100.000% similar) in 102 aa overlap (9-110:423-524) 10 20 30 mKIAA0 SIPVLAPSSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP :::::::::::::::::::::::::::::: gi|187 WLVGVACRQTGHQRLKAIHLLLRIVQCCSHSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP 400 410 420 430 440 450 40 50 60 70 80 90 mKIAA0 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|187 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY 460 470 480 490 500 510 100 110 mKIAA0 PNKATRLWNVEC :::::::::::: gi|187 PNKATRLWNVEC 520 >>gi|71534076|gb|AAH99976.1| Zzef1 protein [Mus musculus (698 aa) initn: 676 init1: 676 opt: 676 Z-score: 943.0 bits: 182.3 E(): 8.1e-44 Smith-Waterman score: 676; 100.000% identity (100.000% similar) in 102 aa overlap (9-110:597-698) 10 20 30 mKIAA0 SIPVLAPSSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP :::::::::::::::::::::::::::::: gi|715 WLVGVACRQTGHQRLKAIHLLLRIVQCCSHSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP 570 580 590 600 610 620 40 50 60 70 80 90 mKIAA0 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|715 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY 630 640 650 660 670 680 100 110 mKIAA0 PNKATRLWNVEC :::::::::::: gi|715 PNKATRLWNVEC 690 >>gi|148680752|gb|EDL12699.1| mCG125423, isoform CRA_a [ (2396 aa) initn: 676 init1: 676 opt: 676 Z-score: 935.0 bits: 182.6 E(): 2.2e-43 Smith-Waterman score: 676; 100.000% identity (100.000% similar) in 102 aa overlap (9-110:2295-2396) 10 20 30 mKIAA0 SIPVLAPSSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP :::::::::::::::::::::::::::::: gi|148 WLVGVACRQTGHQRLKAIHLLLRIVQCCSHSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP 2270 2280 2290 2300 2310 2320 40 50 60 70 80 90 mKIAA0 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY 2330 2340 2350 2360 2370 2380 100 110 mKIAA0 PNKATRLWNVEC :::::::::::: gi|148 PNKATRLWNVEC 2390 >>gi|148680753|gb|EDL12700.1| mCG125423, isoform CRA_b [ (2429 aa) initn: 676 init1: 676 opt: 676 Z-score: 935.0 bits: 182.6 E(): 2.3e-43 Smith-Waterman score: 676; 100.000% identity (100.000% similar) in 102 aa overlap (9-110:2328-2429) 10 20 30 mKIAA0 SIPVLAPSSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP :::::::::::::::::::::::::::::: gi|148 WLVGVACRQTGHQRLKAIHLLLRIVQCCSHSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP 2300 2310 2320 2330 2340 2350 40 50 60 70 80 90 mKIAA0 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY 2360 2370 2380 2390 2400 2410 100 110 mKIAA0 PNKATRLWNVEC :::::::::::: gi|148 PNKATRLWNVEC 2420 >>gi|56206448|emb|CAI25190.1| zinc finger, ZZ-type with (2891 aa) initn: 676 init1: 676 opt: 676 Z-score: 933.8 bits: 182.7 E(): 2.6e-43 Smith-Waterman score: 676; 100.000% identity (100.000% similar) in 102 aa overlap (9-110:2790-2891) 10 20 30 mKIAA0 SIPVLAPSSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP :::::::::::::::::::::::::::::: gi|562 WLVGVACRQTGHQRLKAIHLLLRIVQCCSHSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP 2760 2770 2780 2790 2800 2810 40 50 60 70 80 90 mKIAA0 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|562 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY 2820 2830 2840 2850 2860 2870 100 110 mKIAA0 PNKATRLWNVEC :::::::::::: gi|562 PNKATRLWNVEC 2880 2890 >>gi|148887333|sp|Q5SSH7.2|ZZEF1_MOUSE RecName: Full=Zin (2924 aa) initn: 676 init1: 676 opt: 676 Z-score: 933.8 bits: 182.7 E(): 2.6e-43 Smith-Waterman score: 676; 100.000% identity (100.000% similar) in 102 aa overlap (9-110:2823-2924) 10 20 30 mKIAA0 SIPVLAPSSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP :::::::::::::::::::::::::::::: gi|148 WLVGVACRQTGHQRLKAIHLLLRIVQCCSHSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP 2800 2810 2820 2830 2840 2850 40 50 60 70 80 90 mKIAA0 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY 2860 2870 2880 2890 2900 2910 100 110 mKIAA0 PNKATRLWNVEC :::::::::::: gi|148 PNKATRLWNVEC 2920 >>gi|109488501|ref|XP_237787.4| PREDICTED: similar to zi (2964 aa) initn: 676 init1: 676 opt: 676 Z-score: 933.7 bits: 182.7 E(): 2.7e-43 Smith-Waterman score: 676; 100.000% identity (100.000% similar) in 102 aa overlap (9-110:2863-2964) 10 20 30 mKIAA0 SIPVLAPSSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP :::::::::::::::::::::::::::::: gi|109 WLVGVACRQTGHQRLKAIHLLLRIVRCCSHSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP 2840 2850 2860 2870 2880 2890 40 50 60 70 80 90 mKIAA0 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY 2900 2910 2920 2930 2940 2950 100 110 mKIAA0 PNKATRLWNVEC :::::::::::: gi|109 PNKATRLWNVEC 2960 >>gi|45595581|gb|AAH67099.1| ZZEF1 protein [Homo sapiens (568 aa) initn: 656 init1: 656 opt: 656 Z-score: 916.3 bits: 177.1 E(): 2.5e-42 Smith-Waterman score: 656; 96.078% identity (100.000% similar) in 102 aa overlap (9-110:467-568) 10 20 30 mKIAA0 SIPVLAPSSDLCDLGLLKPLWQLFTHMEYGLFEDVTQP ::::::.::::::::::::::::::::::: gi|455 WLVGVACRQTGHQRLKAIHLLLRIVRCCGHSDLCDLALLKPLWQLFTHMEYGLFEDVTQP 440 450 460 470 480 490 40 50 60 70 80 90 mKIAA0 GILLPLHRALTELFFVTENRAQELGLLQEYLLALTTEDHLLRCAAQALQNIAAISLAINY :::::::::::::::::::::::::.::.:::::::.::::::::::::::::::::::: gi|455 GILLPLHRALTELFFVTENRAQELGVLQDYLLALTTDDHLLRCAAQALQNIAAISLAINY 500 510 520 530 540 550 100 110 mKIAA0 PNKATRLWNVEC :::::::::::: gi|455 PNKATRLWNVEC 560 110 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sat Mar 14 12:26:27 2009 done: Sat Mar 14 12:30:09 2009 Total Scan time: 530.660 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]