FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0187.ptfa, 1287 aa
 vs ./tmplib.26680 library

1767730 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.3653+/-0.00622; mu= 7.1927+/- 0.413
 mean_var=218.6933+/-51.459, 0's: 0 Z-trim: 5  B-trim: 0 in 0/36
 Lambda= 0.0867

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1401  ( 800 res)   mph02450                   ( 800)  377   61   1e-09


>>mKIAA1401  ( 800 res)   mph02450                        (800 aa)
 initn: 328 init1: 143 opt: 377  Z-score: 266.8  bits: 60.9 E(): 1e-09
Smith-Waterman score: 390;  25.646% identity (28.731% ungapped) in 503 aa overlap (631-1119:315-777)

              610       620       630         640        650       
mKIAA0 DESEDSELSAEEEDSDHREVRGKLAHPQRDSGQKP--ASESLV-DETSDIESLLKEEEEY
                                     : .::  : :  : : . :.:  ::   . 
mKIAA1 LLHIVGHGDFQMNQIDAPVDPFPLNPRVIKSQKKPNMAMEVCVTDAAPDMEEDLKVLMKA
          290       300       310       320       330       340    

       660              670       680       690       700          
mKIAA0 KEDNSSSVETS-------GALKWKEDLSRKAAEAFLRQQQAAPNLRKLIYGTVTEDNE--
         :.. :..:        :   :  .     :. .:.:.. .  ..:.  :: . . :  
mKIAA1 DPDHQESLQTEAIPDPMEGEQTWPTEEELDEADDLLKQRSRV--VKKVPKGTSSYQAEWI
          350       360       370       380         390       400  

       710       720       730       740       750       760       
mKIAA0 -DEDGDPAEELGGLFHVSQPDRGCKHKADSLDCSRFPVEAPHDWDLEEVMNSIRDCFVTG
        :: :: ..  :: .             :...   :  :  .: . ::  .  .   .  
mKIAA1 LDE-GDESDGEGGEY-------------DDIQHEGFMEEESQDGSGEEEEEECETMTLGE
             410                    420       430       440        

       770       780       790       800       810       820       
mKIAA0 KWEDDKDAAKILAEEEELYGDFEDLETGDVHKGKPGPDTQSEDIEEEEVKEETDPSEEES
       . .::    :. ::.:: .     ::     : :       ..  ::   .: :  .. .
mKIAA1 SVRDDLYDEKVDAEDEERM-----LE-----KYK-------QERLEEMFPDEMDTPRDVA
      450       460                 470              480       490 

       830       840       850       860       870       880       
mKIAA0 ARKKHLDKKRKLKELFDAEYDEGESTYFDDLKGEMQRQAQLNQAEFEDQEDETRVQYEGF
       :: . ..: : :: .  . .:  :.   :  .  .: :  .:  .   .: : . . :: 
mKIAA1 ARIR-FQKYRGLKSFRTSPWDPKENLPRDYARI-FQFQNFVNTRKRIFKEIEEK-EAEGA
              500       510       520        530       540         

       890       900       910       920       930       940       
mKIAA0 RPGMYVRIEIENIPCEFVQNFDPHYPIILGGLGNSEGTVGYVQMRIKKHRWYKKILKSRD
       . : :: ... ..:   :. :    :.:  .:   :  .. ..: ....    . .:...
mKIAA1 EVGWYVTLHVSDVPVSVVEYFRQGAPLIAFSLLPYEQKMSVLNMVVSRNPGNTEPVKAKE
      550       560       570       580       590       600        

       950       960       970       980       990       1000      
mKIAA0 PIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGATFWGPIT-PQGTGFLAIQSV
        .::  :.:::.. ::.  .    .... ..        .: ..::: : .. .:  :  
mKIAA1 ELIFHCGFRRFRASPLFSQHTAADKHKFQRFLTADAAFVVTVFAPITFPPASVLLFKQRR
      610       620       630       640       650       660        

       1010      1020      1030      1040      1050      1060      
mKIAA0 SGVMPEFRIAATGVVLDLDKSIKIVKKLKLTGFPFKIFKNTSFIKGMFNSALEVAKFEGA
       .:.     . ::: ....: .  ..:.. :.: ::::: . . .. :: .  .:  :. .
mKIAA1 NGMHS---LIATGHLFSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVMWFKPV
      670          680       690       700       710       720     

       1070      1080      1090      1100      1110      1120      
mKIAA0 VIRTVSGIRGQIKKALRSPEGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKP
        .::  : ::.::. : . .: .. ::. ::  .: :.:  .  :     :.:       
mKIAA1 ELRTKWGRRGHIKEPLGT-HGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPEPVP
         730       740        750       760       770       780    

       1130      1140      1150      1160      1170      1180      
mKIAA0 VGEKDTWSGMRTTHQLRLAHGIKLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNK
                                                                   
mKIAA1 WVKSDISSTVSEVDME                                            
          790       800                                            




1287 residues in 1 query   sequences
1767730 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:14:06 2006 done: Mon Mar 27 10:14:07 2006
 Scan time:  1.150 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]