# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpm09169.fasta.nr -Q ../query/mKIAA0127.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0127, 129 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921310 sequences Expectation_n fit: rho(ln(x))= 5.4632+/-0.000186; mu= 4.0831+/- 0.010 mean_var=65.7582+/-13.092, 0's: 33 Z-trim: 35 B-trim: 2511 in 1/66 Lambda= 0.158161 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|14029836|gb|AAK52832.1|AF366403_1 TRIP-Br2 [Mus ( 181) 846 201.0 5.9e-50 gi|15928496|gb|AAH14726.1| SERTA domain containing ( 309) 846 201.1 9.3e-50 gi|32699726|sp|Q9JJG5.2|SRTD2_MOUSE RecName: Full= ( 309) 846 201.1 9.3e-50 gi|14198393|gb|AAH08257.1| Sertad2 protein [Mus mu ( 128) 840 199.5 1.1e-49 gi|7670348|dbj|BAA95026.1| unnamed protein product ( 309) 841 199.9 2.1e-49 gi|149044756|gb|EDL97942.1| rCG23334 [Rattus norve ( 270) 811 193.1 2.1e-47 gi|66912114|gb|AAH98047.1| SERTA domain containing ( 315) 811 193.1 2.4e-47 gi|194220676|ref|XP_001494703.2| PREDICTED: simila ( 315) 740 176.9 1.8e-42 gi|109103150|ref|XP_001088920.1| PREDICTED: SERTA ( 314) 732 175.1 6.4e-42 gi|55726847|emb|CAH90183.1| hypothetical protein [ ( 314) 719 172.1 5e-41 gi|114577712|ref|XP_515728.2| PREDICTED: SERTA dom ( 314) 713 170.7 1.3e-40 gi|3123047|sp|Q14140.1|SRTD2_HUMAN RecName: Full=S ( 314) 713 170.7 1.3e-40 gi|149640824|ref|XP_001511648.1| PREDICTED: hypoth ( 315) 677 162.5 3.8e-38 gi|126303768|ref|XP_001374759.1| PREDICTED: hypoth ( 311) 668 160.5 1.6e-37 gi|119903731|ref|XP_001254142.1| PREDICTED: simila ( 370) 667 160.3 2.2e-37 gi|53133638|emb|CAG32148.1| hypothetical protein [ ( 316) 644 155.0 7.1e-36 gi|224046982|ref|XP_002199738.1| PREDICTED: SERTA ( 315) 636 153.2 2.5e-35 gi|224172109|ref|XP_002192907.1| PREDICTED: SERTA ( 315) 635 152.9 3e-35 gi|73970211|ref|XP_855234.1| PREDICTED: similar to ( 442) 617 148.9 6.8e-34 gi|76779551|gb|AAI06420.1| MGC131085 protein [Xeno ( 317) 597 144.3 1.2e-32 gi|122889502|emb|CAD61094.2| SERTA domain containi ( 361) 412 102.1 6.9e-20 gi|45501147|gb|AAH67135.1| SERTA domain containing ( 361) 412 102.1 6.9e-20 gi|224051808|ref|XP_002200370.1| PREDICTED: hypoth ( 290) 234 61.4 9.6e-08 gi|115313063|gb|AAI24230.1| Si:dkey-177p2.6 [Danio ( 285) 232 61.0 1.3e-07 gi|47224773|emb|CAG00367.1| unnamed protein produc ( 364) 226 59.6 4.1e-07 gi|56207324|emb|CAI20742.1| novel protein similar ( 286) 219 58.0 1e-06 gi|47207264|emb|CAF92768.1| unnamed protein produc ( 244) 189 51.1 0.0001 gi|47216777|emb|CAG03781.1| unnamed protein produc ( 275) 186 50.5 0.00018 gi|210111536|gb|EEA59335.1| hypothetical protein B ( 367) 166 45.9 0.0055 >>gi|14029836|gb|AAK52832.1|AF366403_1 TRIP-Br2 [Mus mus (181 aa) initn: 846 init1: 846 opt: 846 Z-score: 1053.2 bits: 201.0 E(): 5.9e-50 Smith-Waterman score: 846; 100.000% identity (100.000% similar) in 129 aa overlap (1-129:53-181) 10 20 30 mKIAA0 EAAHTAAPEGPKGTSSESSVQKPEGPEEGR :::::::::::::::::::::::::::::: gi|140 LSSAALPAEKDSFSSALDEIEELCPTSTSTEAAHTAAPEGPKGTSSESSVQKPEGPEEGR 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA0 TDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTASKMAPVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|140 TDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTASKMAPVS 90 100 110 120 130 140 100 110 120 mKIAA0 ADDLLKTLAPYSNQPVAPSQPFKMDLTELDHIMEVLVGS ::::::::::::::::::::::::::::::::::::::: gi|140 ADDLLKTLAPYSNQPVAPSQPFKMDLTELDHIMEVLVGS 150 160 170 180 >>gi|15928496|gb|AAH14726.1| SERTA domain containing 2 [ (309 aa) initn: 846 init1: 846 opt: 846 Z-score: 1049.6 bits: 201.1 E(): 9.3e-50 Smith-Waterman score: 846; 100.000% identity (100.000% similar) in 129 aa overlap (1-129:181-309) 10 20 30 mKIAA0 EAAHTAAPEGPKGTSSESSVQKPEGPEEGR :::::::::::::::::::::::::::::: gi|159 LSSAALPAEKDSFSSALDEIEELCPTSTSTEAAHTAAPEGPKGTSSESSVQKPEGPEEGR 160 170 180 190 200 210 40 50 60 70 80 90 mKIAA0 TDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTASKMAPVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|159 TDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTASKMAPVS 220 230 240 250 260 270 100 110 120 mKIAA0 ADDLLKTLAPYSNQPVAPSQPFKMDLTELDHIMEVLVGS ::::::::::::::::::::::::::::::::::::::: gi|159 ADDLLKTLAPYSNQPVAPSQPFKMDLTELDHIMEVLVGS 280 290 300 >>gi|32699726|sp|Q9JJG5.2|SRTD2_MOUSE RecName: Full=SERT (309 aa) initn: 846 init1: 846 opt: 846 Z-score: 1049.6 bits: 201.1 E(): 9.3e-50 Smith-Waterman score: 846; 100.000% identity (100.000% similar) in 129 aa overlap (1-129:181-309) 10 20 30 mKIAA0 EAAHTAAPEGPKGTSSESSVQKPEGPEEGR :::::::::::::::::::::::::::::: gi|326 LSSAALPAEKDSFSSALDEIEELCPTSTSTEAAHTAAPEGPKGTSSESSVQKPEGPEEGR 160 170 180 190 200 210 40 50 60 70 80 90 mKIAA0 TDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTASKMAPVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|326 TDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTASKMAPVS 220 230 240 250 260 270 100 110 120 mKIAA0 ADDLLKTLAPYSNQPVAPSQPFKMDLTELDHIMEVLVGS ::::::::::::::::::::::::::::::::::::::: gi|326 ADDLLKTLAPYSNQPVAPSQPFKMDLTELDHIMEVLVGS 280 290 300 >>gi|14198393|gb|AAH08257.1| Sertad2 protein [Mus muscul (128 aa) initn: 840 init1: 840 opt: 840 Z-score: 1048.1 bits: 199.5 E(): 1.1e-49 Smith-Waterman score: 840; 100.000% identity (100.000% similar) in 128 aa overlap (2-129:1-128) 10 20 30 40 50 60 mKIAA0 EAAHTAAPEGPKGTSSESSVQKPEGPEEGRTDDSRFMDSLPGNFEITTSTGFLTDLTLDD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|141 AAHTAAPEGPKGTSSESSVQKPEGPEEGRTDDSRFMDSLPGNFEITTSTGFLTDLTLDD 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 ILFADIDTSMYDFDPCTSASGTASKMAPVSADDLLKTLAPYSNQPVAPSQPFKMDLTELD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|141 ILFADIDTSMYDFDPCTSASGTASKMAPVSADDLLKTLAPYSNQPVAPSQPFKMDLTELD 60 70 80 90 100 110 mKIAA0 HIMEVLVGS ::::::::: gi|141 HIMEVLVGS 120 >>gi|7670348|dbj|BAA95026.1| unnamed protein product [Mu (309 aa) initn: 841 init1: 841 opt: 841 Z-score: 1043.4 bits: 199.9 E(): 2.1e-49 Smith-Waterman score: 841; 99.225% identity (100.000% similar) in 129 aa overlap (1-129:181-309) 10 20 30 mKIAA0 EAAHTAAPEGPKGTSSESSVQKPEGPEEGR :::::::::::::::::::::::::::::: gi|767 LSSAALPAEKDSFSSALDEIEELCPTSTSTEAAHTAAPEGPKGTSSESSVQKPEGPEEGR 160 170 180 190 200 210 40 50 60 70 80 90 mKIAA0 TDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTASKMAPVS :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|767 TDDSRFMDSLPGNFEITTSTGFLADLTLDDILFADIDTSMYDFDPCTSASGTASKMAPVS 220 230 240 250 260 270 100 110 120 mKIAA0 ADDLLKTLAPYSNQPVAPSQPFKMDLTELDHIMEVLVGS ::::::::::::::::::::::::::::::::::::::: gi|767 ADDLLKTLAPYSNQPVAPSQPFKMDLTELDHIMEVLVGS 280 290 300 >>gi|149044756|gb|EDL97942.1| rCG23334 [Rattus norvegicu (270 aa) initn: 811 init1: 811 opt: 811 Z-score: 1007.4 bits: 193.1 E(): 2.1e-47 Smith-Waterman score: 811; 96.124% identity (98.450% similar) in 129 aa overlap (1-129:142-270) 10 20 30 mKIAA0 EAAHTAAPEGPKGTSSESSVQKPEGPEEGR ::: .::::: ::::::.::::::::.::: gi|149 LSSPALSAEKDSFSSALDEIEELCPTSTSTEAAAAAAPEGSKGTSSETSVQKPEGPQEGR 120 130 140 150 160 170 40 50 60 70 80 90 mKIAA0 TDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTASKMAPVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 TDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTASKMAPVS 180 190 200 210 220 230 100 110 120 mKIAA0 ADDLLKTLAPYSNQPVAPSQPFKMDLTELDHIMEVLVGS ::::::::::::::::::::::::::::::::::::::: gi|149 ADDLLKTLAPYSNQPVAPSQPFKMDLTELDHIMEVLVGS 240 250 260 270 >>gi|66912114|gb|AAH98047.1| SERTA domain containing 2 [ (315 aa) initn: 811 init1: 811 opt: 811 Z-score: 1006.3 bits: 193.1 E(): 2.4e-47 Smith-Waterman score: 811; 96.124% identity (98.450% similar) in 129 aa overlap (1-129:187-315) 10 20 30 mKIAA0 EAAHTAAPEGPKGTSSESSVQKPEGPEEGR ::: .::::: ::::::.::::::::.::: gi|669 LSSPALSAEKDSFSSALDEIEELCPTSTSTEAAAAAAPEGSKGTSSETSVQKPEGPQEGR 160 170 180 190 200 210 40 50 60 70 80 90 mKIAA0 TDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTASKMAPVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|669 TDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTASKMAPVS 220 230 240 250 260 270 100 110 120 mKIAA0 ADDLLKTLAPYSNQPVAPSQPFKMDLTELDHIMEVLVGS ::::::::::::::::::::::::::::::::::::::: gi|669 ADDLLKTLAPYSNQPVAPSQPFKMDLTELDHIMEVLVGS 280 290 300 310 >>gi|194220676|ref|XP_001494703.2| PREDICTED: similar to (315 aa) initn: 740 init1: 740 opt: 740 Z-score: 918.8 bits: 176.9 E(): 1.8e-42 Smith-Waterman score: 740; 87.597% identity (96.124% similar) in 129 aa overlap (1-129:187-315) 10 20 30 mKIAA0 EAAHTAAPEGPKGTSSESSVQKPEGPEEGR ::. .:. ..::: :::::.::::: .::: gi|194 VSPPALPPEKDSFSSALDEIEELCPTSTSTEATTVAVTDSPKGDSSESSLQKPEGLQEGR 160 170 180 190 200 210 40 50 60 70 80 90 mKIAA0 TDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTASKMAPVS :::..::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|194 PDDSKLMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSTSGTASKMAPVS 220 230 240 250 260 270 100 110 120 mKIAA0 ADDLLKTLAPYSNQPVAPSQPFKMDLTELDHIMEVLVGS ::::::::::::.:::::::::::::::::::::::::: gi|194 ADDLLKTLAPYSSQPVAPSQPFKMDLTELDHIMEVLVGS 280 290 300 310 >>gi|109103150|ref|XP_001088920.1| PREDICTED: SERTA doma (314 aa) initn: 731 init1: 731 opt: 732 Z-score: 908.9 bits: 175.1 E(): 6.4e-42 Smith-Waterman score: 732; 87.597% identity (97.674% similar) in 129 aa overlap (1-129:187-314) 10 20 30 mKIAA0 EAAHTAAPEGPKGTSSESSVQKPEGPEEGR ::: .:: .. ::::::...:::.::.:.: gi|109 LSPPTLSPEKDSFSSALDEIEELCPTSTSTEAA-AAATDSVKGTSSEAGAQKPDGPQESR 160 170 180 190 200 210 40 50 60 70 80 90 mKIAA0 TDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTASKMAPVS ::::..::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|109 TDDSKLMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSSSGTASKMAPVS 220 230 240 250 260 270 100 110 120 mKIAA0 ADDLLKTLAPYSNQPVAPSQPFKMDLTELDHIMEVLVGS ::::::::::::.:::::::::::::::::::::::::: gi|109 ADDLLKTLAPYSSQPVAPSQPFKMDLTELDHIMEVLVGS 280 290 300 310 >>gi|55726847|emb|CAH90183.1| hypothetical protein [Pong (314 aa) initn: 718 init1: 718 opt: 719 Z-score: 892.9 bits: 172.1 E(): 5e-41 Smith-Waterman score: 719; 86.047% identity (97.674% similar) in 129 aa overlap (1-129:187-314) 10 20 30 mKIAA0 EAAHTAAPEGPKGTSSESSVQKPEGPEEGR ::: .:: .. ::::::...:::..:.:.: gi|557 LSPPALSPEKDSFSSALDEIEELCPTSTSTEAA-AAATDSVKGTSSEAGTQKPDSPQESR 160 170 180 190 200 210 40 50 60 70 80 90 mKIAA0 TDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTASKMAPVS .:::..::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|557 ADDSKLMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSSSGTASKMAPVS 220 230 240 250 260 270 100 110 120 mKIAA0 ADDLLKTLAPYSNQPVAPSQPFKMDLTELDHIMEVLVGS ::::::::::::.:::::::::::::::::::::::::: gi|557 ADDLLKTLAPYSSQPVAPSQPFKMDLTELDHIMEVLVGS 280 290 300 310 129 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 23:36:11 2009 done: Thu Mar 12 23:40:05 2009 Total Scan time: 560.110 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]