FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1196.ptfa, 883 aa vs ./tmplib.26680 library 1768134 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.2320+/-0.00712; mu= 10.1089+/- 0.476 mean_var=324.7636+/-77.472, 0's: 0 Z-trim: 10 B-trim: 0 in 0/36 Lambda= 0.0712 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1805 ( 591 res) mej00823 ( 591) 1277 145 2.3e-35 mKIAA0863 ( 1208 res) mbg05774 (1208) 229 38 0.0081 >>mKIAA1805 ( 591 res) mej00823 (591 aa) initn: 1029 init1: 582 opt: 1277 Z-score: 727.4 bits: 145.2 E(): 2.3e-35 Smith-Waterman score: 1291; 37.396% identity (40.072% ungapped) in 599 aa overlap (285-882:11-570) 260 270 280 290 300 310 mKIAA1 VPVTKPIPITKPVPLTKHMPVTKLVTVSKPVPLTKPVPVSRPIVVSKPVPVSRPIAISRH : :. : :... . . : :: :.. mKIAA1 PHPGEARRAEVALVCPEPLGEIVRRGGGVMSSRLGAVTAT 10 20 30 40 320 330 340 350 360 370 mKIAA1 IPPCKMVLLSKSENKTLRATGKNSNKKRAADSLDTCPILSKQARPENGAYGPSSMDQSVT : .. ..... : .: ..:. . . . .. . .:. . :: . mKIAA1 PGPTSL-----KQQRSTRIVGAKNNRAQCSIKDNSFQYTIPHEDSLSGSSSASSCEPVSD 50 60 70 80 90 380 390 400 410 420 430 mKIAA1 FPLSTDPSGSRPLMGKEALRPIGPVSQPEEDPERTKHRRKQKTPKKFTGEQPSISGTFGL : . : : . ..: . .:: : :. :.: : : .. :. . mKIAA1 FTATLRKSTY--WMKMRRIKPAA-TSQVEGAGEKEKERAKGK--RNVKQEEDEDYRELPQ 100 110 120 130 140 150 440 450 460 470 480 490 mKIAA1 KGLAKAEDKARVHRSKKQEGSGSEEVRKKVLATPVTVSKEAPTPVAHPAPGGPEEQWQRA : : . .: .: : : . : : :: :. .: :. ::.: mKIAA1 K---KHKLYGRKQRPKAQPHPKPQARR---------VRKEPPVYAA----GSMEEKWYLE 160 170 180 190 500 510 520 530 540 550 mKIAA1 IHERGEAVCPTCNVVTRKTLVGLKKHMEVCHKLQEALKCQHCRKQFKSKAGLNYHTMAEH : ..: . ::::..: :::. ::::::: :. :: . :.:: ::..: ::..::.::.: mKIAA1 IMDKGSVSCPTCQAVGRKTIEGLKKHMENCK--QEMFTCHHCGKQLHSLAGMKYHVMANH 200 210 220 230 240 250 560 570 580 590 600 610 mKIAA1 SAKPTDAEASEGGEQEERERLRKVLKQMGRLRCPQEGCGAAFSSLMGYQYHQRRCGKPPC .. : ..: : :::::: :::.::.::: .:.:...:.:.::: :: :.::: mKIAA1 NSLPILKAGDEVDEPSERERLRTVLKRMGKLRCMRESCSSTFTSIMGYLYHVRKCGKEAS 260 270 280 290 300 310 620 630 640 650 660 670 mKIAA1 EVDSPSFPCTHCGKTYRSKAGHDYHVRSEHTAPPPEDPTDKIPEAEDLLGVERTPSGRIR :... .. : :::: :::::: ::.:::: : : .. :. ...: .::.. mKIAA1 ELEKLALKCHHCGKPYRSKAGLAYHMRSEHG--PVFFPESEQPDCLKEMSLEAKGGGRVQ 320 330 340 350 360 370 680 690 700 710 720 730 mKIAA1 RTSAQVAVFHLQEIAEDELARDWTKRRMKDDLVPETARLNYTRPGLPTLNPQLLEAWKNE : ::..::.::::.: ::...: ::.. .::::. .:.::::::::.. ..:. ::.. mKIAA1 RRSAKIAVYHLQELASAELTKEWPKRKVLQDLVPDDRKLKYTRPGLPTFSQEVLHKWKTD 380 390 400 410 420 430 740 750 760 770 780 790 mKIAA1 VKEKGHVNCPNDCCEAIYASVSGLKAHLASCSKGDHLVGKYRCLLCPKEFSSESGVKYHI .:. ...:::. :::.:.:::::::::.::. : ..:::.:::: ::: ::::::::: mKIAA1 IKKYHRIQCPNQGCEAVYSSVSGLKAHLGSCTLGTFVAGKYKCLLCEKEFVSESGVKYHI 440 450 460 470 480 490 800 810 820 830 840 850 mKIAA1 LKTHGENWFRTSADPSSKHKSQDSLMPRKEKKKSLSGGKKR-GRKPKERSSEEPASKLPP ..:.:.:: ..:.. :: ..:: :.... ... ::. . : ...: . :: mKIAA1 NSVHAEDWF--VVNPTTT-KSFEKLMKIKQRQQEEEKQRQQHGRRRSLRRQQQPCME-PP 500 510 520 530 540 860 870 880 mKIAA1 NRDDWPPGGRDRGSRSSTGKKAGAGKAPEK . . : .:...: :.. .: :: mKIAA1 ESQLEPKAGKEQG-----GNEELVGPDPEPVPAQPQKAEPAKTTHKRGRK 550 560 570 580 590 >>mKIAA0863 ( 1208 res) mbg05774 (1208 aa) initn: 115 init1: 89 opt: 229 Z-score: 143.0 bits: 38.1 E(): 0.0081 Smith-Waterman score: 264; 22.340% identity (28.475% ungapped) in 752 aa overlap (183-883:451-1091) 160 170 180 190 200 mKIAA1 LAFPCPFCEAAFTSKTQLEKHRIWNHMDHPLPAPKP-GPVSRPV-TISRPVGVSKPIGV- :: :: ::..::: :.: : :: mKIAA0 VGPVNKSVGTSILPVNQAMCSVNQAVRPGLLPLTKPMGPMNRPVGPAVLPMGPSVNSGVL 430 440 450 460 470 480 210 220 230 240 250 mKIAA1 --SKP--VTVGK-------PVGVSKPIGISKPVTVSRPIPVTKPVTVSRPMQVSRPVPVT ..: ..::. :.: : :. :.. . : :. : . :.. .: . mKIAA0 QATSPGVISVGRAVPSGVLPAGQVTPAGVIPGQTATSGVLPTGQVVQSSTLPVGQTAP-S 490 500 510 520 530 260 270 280 290 300 mKIAA1 KPIPITKPVPLTKHMPV-----TKLVTVSKPVPLTKPVPVSRPIV-----VSKPV----- . .: . ::: . .:. . :.. .. :: . :::.. . ...:: mKIAA0 RGLPPGQTVPL-RVLPAGQVVPSGLLSSNQTVP-SGVVPVNQGVNSGVLQLGQPVTPGVL 540 550 560 570 580 590 310 320 330 340 350 360 mKIAA1 PVSRPI--AISRHIPPCKMVLLSKSENKTLRA-TGKNSNKKRAADSLDTCPILSKQARPE ::. :. .. . : . .: :. .:: :..:.. ... : .::. mKIAA0 PVGPPVRPGVLQLSPSVSTSILPMSQ--PVRAGTSQNTTFFTSGSILRQLIPTGKQV--- 600 610 620 630 640 650 370 380 390 400 410 420 mKIAA1 NGAYGPSSMDQSVTFPLSTDPSGSRPLMGKEALRPIGPVSQPEEDPERTKHRRKQKTPKK :: . :::.:. :::. .: .:: : .: . mKIAA0 NGIPTYTLAPVSVTLPV---PSGG-------GLAAVGPPPQ---------------VPVQ 660 670 680 430 440 450 460 470 mKIAA1 FTGEQPSISGTFGLKGLAKAEDKARVHRSKKQEGSGSEEV-RKKVLATPV-TVSKEAPTP : :: ::: : ::. . .::..:. .: .: : mKIAA0 FL---PSGSGT--------------------QMGSSLPSLPSPQVLVSPAPSVFVQATPP 690 700 710 720 480 490 500 510 520 530 mKIAA1 VAHPAPGGPE-EQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCHKLQEALKCQHCR .: . . .::. .::.:: . ... . :::: :: .:: :: : mKIAA0 LADANQALKQAKQWK---------TCPVCNELFPSNVYQV--HMEVAHKQSEAQLCQVCN 730 740 750 760 770 540 550 560 570 580 590 mKIAA1 KQFKSKAGLNYHTMAEHSAKPTDAEASEGGEQEERERLRKVLKQMGR--LRCPQEGCGAA . : ... :.. : . : .....:: : :. :: : . .:: . : .. mKIAA0 ELFPANV---YQVHMEVAHKQSESKSSEKLEPEKLAACAPFLKWMREKTVRCLSCKCLVS 780 790 800 810 820 830 600 610 620 630 640 650 mKIAA1 FSSLMGYQYHQRRCGKPPCEVDSPSFPCTHCGKTYRSKAGHDYHVRSEHTAPP--PEDPT :: .: : . : : :... : : :..: . : . mKIAA0 QEELM---HHLLMHG----------LGCLFCPCTFHDVRGLVEHSRTKHLGKKRLSMDYS 840 850 860 870 660 670 680 690 700 710 mKIAA1 DKIPEAE-DLLGVERTPSGRIRRTSAQVAVFHLQEIAEDELARDWTKRRMKDDLVPETAR .. . . : : : . .... ....: :. . .::: .. mKIAA0 NRGFQLDLDANGNLLFPHLDF------ITILPREKLGEREVYLAILAGIHSKSLVPVYVK 880 890 900 910 920 930 720 730 740 750 760 mKIAA1 LNYTRPGLPTLNPQLLEAWKNEVKEKGHVNCPNDCCEAIYASVSGLKAHLAS---CSKGD . :: : . :. . .: ...:: : . . .... . :: mKIAA0 V---RPQ-PEVAPK--------IPNKQKLTCP--FCLSTFMTADAYELHLKERHHVMPTV 940 950 960 970 770 780 790 800 810 820 mKIAA1 HLVGK---YRCLLCPKEFSSE---SGVKYHILKTHGENWFRTSADPSSKHKSQDSLMPRK : . . ..:. : .... ... :.:. .. . : :: . : ... . mKIAA0 HTMLRSPAFKCIHCCGVYTGNMTLGAIAVHLLRCRS-----APKDSSSDLQVQPGFIESS 980 990 1000 1010 1020 1030 830 840 850 860 870 880 mKIAA1 EKKKSLSGGKKRGRKPKERSSEEPASKLPP--NRDDWPPGGRDRGSRSSTGKKAGAGKAP : . .. : .: . : ..: : .:: : . .:.:.. : : .: mKIAA0 ELLMVNGDVIPESTFPVKR--KLPEGHLGPEDQRDGEEPQ-LTLDADASSGSEKGLGAVP 1040 1050 1060 1070 1080 mKIAA1 EK : mKIAA0 LKRQKSEIRTEGSGPSEDSLQALALDPSKYEGRSYEEKKQFLRDYFHRRPYPSRKEVELL 1090 1100 1110 1120 1130 1140 883 residues in 1 query sequences 1768134 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:38:09 2006 done: Mon Mar 27 10:38:10 2006 Scan time: 0.950 Display time: 0.110 Function used was FASTA [version 3.4t11 Apr 17, 2002]