# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpm08358.fasta.nr -Q ../query/mKIAA1311.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1311, 735 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7904489 sequences Expectation_n fit: rho(ln(x))= 6.5714+/-0.000206; mu= 7.7918+/- 0.011 mean_var=152.8466+/-29.102, 0's: 31 Z-trim: 73 B-trim: 110 in 2/65 Lambda= 0.103740 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148678090|gb|EDL10037.1| mCG11586, isoform CRA_ ( 937) 4912 747.5 5.3e-213 gi|124021006|sp|Q5SFM8.2|RBM27_MOUSE RecName: Full (1060) 4912 747.5 5.7e-213 gi|63723782|ref|XP_128924.6| PREDICTED: RNA bindin (1060) 4912 747.5 5.7e-213 gi|148678089|gb|EDL10036.1| mCG11586, isoform CRA_ ( 730) 4864 740.2 6.5e-211 gi|73949478|ref|XP_544327.2| PREDICTED: similar to (1060) 4651 708.5 3.3e-201 gi|109079178|ref|XP_001100227.1| PREDICTED: simila (1060) 4650 708.3 3.6e-201 gi|114602547|ref|XP_527062.2| PREDICTED: RNA bindi (1060) 4649 708.2 4e-201 gi|119582248|gb|EAW61844.1| POU domain, class 4, t ( 748) 4644 707.3 5.4e-201 gi|124021005|sp|Q9P2N5.2|RBM27_HUMAN RecName: Full (1060) 4644 707.4 6.8e-201 gi|194219755|ref|XP_001503958.2| PREDICTED: RNA bi (1061) 4623 704.3 6e-200 gi|76642455|ref|XP_875172.1| PREDICTED: similar to (1058) 4621 704.0 7.4e-200 gi|149017433|gb|EDL76484.1| RNA binding motif prot ( 839) 4400 670.8 5.7e-190 gi|126291158|ref|XP_001378562.1| PREDICTED: simila (1056) 4399 670.8 7.4e-190 gi|119582247|gb|EAW61843.1| POU domain, class 4, t ( 771) 4250 648.3 3.1e-183 gi|149017431|gb|EDL76482.1| RNA binding motif prot ( 631) 4070 621.3 3.5e-175 gi|149269798|ref|XP_001479182.1| PREDICTED: RNA bi (1005) 3803 581.5 5.1e-163 gi|42540747|gb|AAS19274.1| peri implantation stem (1005) 3803 581.5 5.1e-163 gi|74217186|dbj|BAC31304.2| unnamed protein produc ( 567) 3563 545.4 2.2e-152 gi|109079180|ref|XP_001100136.1| PREDICTED: simila (1005) 3564 545.8 3e-152 gi|114602549|ref|XP_001157201.1| PREDICTED: simila (1005) 3563 545.6 3.3e-152 gi|73949476|ref|XP_858622.1| PREDICTED: similar to (1005) 3555 544.4 7.6e-152 gi|149632451|ref|XP_001512316.1| PREDICTED: simila ( 985) 3171 486.9 1.5e-134 gi|119582249|gb|EAW61845.1| POU domain, class 4, t ( 716) 3164 485.7 2.5e-134 gi|23271799|gb|AAH33524.1| RBM27 protein [Homo sap ( 396) 2368 366.3 1.2e-98 gi|193785936|dbj|BAG54723.1| unnamed protein produ ( 793) 2297 356.0 3.1e-95 gi|32449689|gb|AAH54080.1| Rbm27 protein [Mus musc ( 822) 2149 333.9 1.5e-88 gi|118097624|ref|XP_414664.2| PREDICTED: similar t ( 972) 1736 272.2 6.6e-70 gi|224067056|ref|XP_002189904.1| PREDICTED: RNA bi ( 955) 1689 265.1 8.6e-68 gi|26352726|dbj|BAC39993.1| unnamed protein produc ( 240) 1535 241.4 2.9e-61 gi|47219258|emb|CAG11720.1| unnamed protein produc ( 951) 1055 170.2 3.1e-39 gi|189523807|ref|XP_001920502.1| PREDICTED: simila ( 589) 990 160.3 1.9e-36 gi|194381042|dbj|BAG64089.1| unnamed protein produ ( 346) 787 129.7 1.9e-27 gi|68534669|gb|AAH98517.1| Zgc:109736 [Danio rerio ( 390) 731 121.3 6.8e-25 gi|148668186|gb|EDL00516.1| RNA binding motif prot (1004) 701 117.3 2.9e-23 gi|118084723|ref|XP_416998.2| PREDICTED: similar t ( 986) 694 116.2 5.9e-23 gi|149050153|gb|EDM02477.1| rCG37168 [Rattus norve ( 638) 680 113.9 1.9e-22 gi|84105472|gb|AAI11509.1| Rbm26 protein [Xenopus (1057) 681 114.3 2.4e-22 gi|27696233|gb|AAH43744.1| Rbm26 protein [Xenopus (1059) 680 114.2 2.7e-22 gi|124021004|sp|Q2T9I5.2|RBM26_XENLA RecName: Full (1059) 678 113.9 3.3e-22 gi|73989134|ref|XP_534155.2| PREDICTED: similar to ( 986) 638 107.8 2e-20 gi|194040750|ref|XP_001926052.1| PREDICTED: RNA bi (1005) 638 107.8 2e-20 gi|68161854|emb|CAD39009.3| hypothetical protein [ ( 655) 631 106.6 3.1e-20 gi|73989128|ref|XP_858236.1| PREDICTED: similar to ( 980) 633 107.1 3.3e-20 gi|119600999|gb|EAW80593.1| chromosome 13 open rea ( 993) 633 107.1 3.3e-20 gi|73989136|ref|XP_849293.1| PREDICTED: similar to (1003) 633 107.1 3.4e-20 gi|55728514|emb|CAH90999.1| hypothetical protein [ ( 719) 629 106.3 4.1e-20 gi|149730377|ref|XP_001488804.1| PREDICTED: RNA bi (1005) 631 106.8 4.1e-20 gi|124021002|sp|Q5T8P6.3|RBM26_HUMAN RecName: Full (1007) 631 106.8 4.1e-20 gi|66347384|emb|CAI95136.1| RNA binding motif prot (1008) 631 106.8 4.1e-20 gi|124021003|sp|Q6NZN0.2|RBM26_MOUSE RecName: Full (1012) 631 106.8 4.2e-20 >>gi|148678090|gb|EDL10037.1| mCG11586, isoform CRA_b [M (937 aa) initn: 4912 init1: 4912 opt: 4912 Z-score: 3980.4 bits: 747.5 E(): 5.3e-213 Smith-Waterman score: 4912; 99.864% identity (99.864% similar) in 735 aa overlap (1-735:203-937) 10 20 30 mKIAA1 PPPPGMLMPPMPGPGPGPGPGPGPGPGPGP :::::::::::::::::::::::::::::: gi|148 FDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGP 180 190 200 210 220 230 40 50 60 70 80 90 mKIAA1 GPGHSMRLPVPQGHGQPPPSVVLPIPRPPISQSSLINSRDQPGTSAVPNLAPVGARLPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GPGHSMRLPVPQGHGQPPPSVVLPIPRPPISQSSLINSRDQPGTSAVPNLAPVGARLPPP 240 250 260 270 280 290 100 110 120 130 140 150 mKIAA1 LPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSS 300 310 320 330 340 350 160 170 180 190 200 210 mKIAA1 PTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANI 360 370 380 390 400 410 220 230 240 250 260 270 mKIAA1 VIQTEPPVPVSVNSNVTRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VIQTEPPVPVSVNSNVTRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKN 420 430 440 450 460 470 280 290 300 310 320 330 mKIAA1 HYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 HYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAI 480 490 500 510 520 530 340 350 360 370 380 390 mKIAA1 SSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTLSHLSQQHHSLPQHLHPQQVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTLSHLSQQHHSLPQHLHPQQVM 540 550 560 570 580 590 400 410 420 430 440 450 mKIAA1 VTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHASTNQSDTSHLLNQTGGSSGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHASTNQSDTSHLLNQTGGSSGE 600 610 620 630 640 650 460 470 480 490 500 510 mKIAA1 DCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKKQEML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKKQEML 660 670 680 690 700 710 520 530 540 550 560 570 mKIAA1 EKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSTVSTPSKVKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSTVSTPSKVKT 720 730 740 750 760 770 580 590 600 610 620 630 mKIAA1 KTEAQKELLDTELYLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTISSQGRGR ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|148 KTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTISSQGRGR 780 790 800 810 820 830 640 650 660 670 680 690 mKIAA1 GRGRGRGRGSLNHMVVDHRPKALPGGGFIEEEKDELLQHFSATNQASKFKDRRLQISWHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GRGRGRGRGSLNHMVVDHRPKALPGGGFIEEEKDELLQHFSATNQASKFKDRRLQISWHK 840 850 860 870 880 890 700 710 720 730 mKIAA1 PKVPSISTETEEEEVKEEETETSDLFLHDDDDEDEDEYESRSWRR ::::::::::::::::::::::::::::::::::::::::::::: gi|148 PKVPSISTETEEEEVKEEETETSDLFLHDDDDEDEDEYESRSWRR 900 910 920 930 >>gi|124021006|sp|Q5SFM8.2|RBM27_MOUSE RecName: Full=RNA (1060 aa) initn: 4912 init1: 4912 opt: 4912 Z-score: 3979.8 bits: 747.5 E(): 5.7e-213 Smith-Waterman score: 4912; 99.864% identity (99.864% similar) in 735 aa overlap (1-735:326-1060) 10 20 30 mKIAA1 PPPPGMLMPPMPGPGPGPGPGPGPGPGPGP :::::::::::::::::::::::::::::: gi|124 FDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGP 300 310 320 330 340 350 40 50 60 70 80 90 mKIAA1 GPGHSMRLPVPQGHGQPPPSVVLPIPRPPISQSSLINSRDQPGTSAVPNLAPVGARLPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 GPGHSMRLPVPQGHGQPPPSVVLPIPRPPISQSSLINSRDQPGTSAVPNLAPVGARLPPP 360 370 380 390 400 410 100 110 120 130 140 150 mKIAA1 LPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 LPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSS 420 430 440 450 460 470 160 170 180 190 200 210 mKIAA1 PTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 PTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANI 480 490 500 510 520 530 220 230 240 250 260 270 mKIAA1 VIQTEPPVPVSVNSNVTRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 VIQTEPPVPVSVNSNVTRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKN 540 550 560 570 580 590 280 290 300 310 320 330 mKIAA1 HYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 HYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAI 600 610 620 630 640 650 340 350 360 370 380 390 mKIAA1 SSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTLSHLSQQHHSLPQHLHPQQVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 SSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTLSHLSQQHHSLPQHLHPQQVM 660 670 680 690 700 710 400 410 420 430 440 450 mKIAA1 VTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHASTNQSDTSHLLNQTGGSSGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 VTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHASTNQSDTSHLLNQTGGSSGE 720 730 740 750 760 770 460 470 480 490 500 510 mKIAA1 DCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKKQEML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 DCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKKQEML 780 790 800 810 820 830 520 530 540 550 560 570 mKIAA1 EKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSTVSTPSKVKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 EKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSTVSTPSKVKT 840 850 860 870 880 890 580 590 600 610 620 630 mKIAA1 KTEAQKELLDTELYLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTISSQGRGR ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|124 KTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTISSQGRGR 900 910 920 930 940 950 640 650 660 670 680 690 mKIAA1 GRGRGRGRGSLNHMVVDHRPKALPGGGFIEEEKDELLQHFSATNQASKFKDRRLQISWHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 GRGRGRGRGSLNHMVVDHRPKALPGGGFIEEEKDELLQHFSATNQASKFKDRRLQISWHK 960 970 980 990 1000 1010 700 710 720 730 mKIAA1 PKVPSISTETEEEEVKEEETETSDLFLHDDDDEDEDEYESRSWRR ::::::::::::::::::::::::::::::::::::::::::::: gi|124 PKVPSISTETEEEEVKEEETETSDLFLHDDDDEDEDEYESRSWRR 1020 1030 1040 1050 1060 >>gi|63723782|ref|XP_128924.6| PREDICTED: RNA binding mo (1060 aa) initn: 4912 init1: 4912 opt: 4912 Z-score: 3979.8 bits: 747.5 E(): 5.7e-213 Smith-Waterman score: 4912; 99.864% identity (99.864% similar) in 735 aa overlap (1-735:326-1060) 10 20 30 mKIAA1 PPPPGMLMPPMPGPGPGPGPGPGPGPGPGP :::::::::::::::::::::::::::::: gi|637 FDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGP 300 310 320 330 340 350 40 50 60 70 80 90 mKIAA1 GPGHSMRLPVPQGHGQPPPSVVLPIPRPPISQSSLINSRDQPGTSAVPNLAPVGARLPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|637 GPGHSMRLPVPQGHGQPPPSVVLPIPRPPISQSSLINSRDQPGTSAVPNLAPVGARLPPP 360 370 380 390 400 410 100 110 120 130 140 150 mKIAA1 LPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|637 LPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSS 420 430 440 450 460 470 160 170 180 190 200 210 mKIAA1 PTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|637 PTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANI 480 490 500 510 520 530 220 230 240 250 260 270 mKIAA1 VIQTEPPVPVSVNSNVTRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|637 VIQTEPPVPVSVNSNVTRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKN 540 550 560 570 580 590 280 290 300 310 320 330 mKIAA1 HYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|637 HYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAI 600 610 620 630 640 650 340 350 360 370 380 390 mKIAA1 SSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTLSHLSQQHHSLPQHLHPQQVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|637 SSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTLSHLSQQHHSLPQHLHPQQVM 660 670 680 690 700 710 400 410 420 430 440 450 mKIAA1 VTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHASTNQSDTSHLLNQTGGSSGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|637 VTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHASTNQSDTSHLLNQTGGSSGE 720 730 740 750 760 770 460 470 480 490 500 510 mKIAA1 DCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKKQEML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|637 DCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKKQEML 780 790 800 810 820 830 520 530 540 550 560 570 mKIAA1 EKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSTVSTPSKVKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|637 EKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSTVSTPSKVKT 840 850 860 870 880 890 580 590 600 610 620 630 mKIAA1 KTEAQKELLDTELYLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTISSQGRGR ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|637 KTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTISSQGRGR 900 910 920 930 940 950 640 650 660 670 680 690 mKIAA1 GRGRGRGRGSLNHMVVDHRPKALPGGGFIEEEKDELLQHFSATNQASKFKDRRLQISWHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|637 GRGRGRGRGSLNHMVVDHRPKALPGGGFIEEEKDELLQHFSATNQASKFKDRRLQISWHK 960 970 980 990 1000 1010 700 710 720 730 mKIAA1 PKVPSISTETEEEEVKEEETETSDLFLHDDDDEDEDEYESRSWRR ::::::::::::::::::::::::::::::::::::::::::::: gi|637 PKVPSISTETEEEEVKEEETETSDLFLHDDDDEDEDEYESRSWRR 1020 1030 1040 1050 1060 >>gi|148678089|gb|EDL10036.1| mCG11586, isoform CRA_a [M (730 aa) initn: 4864 init1: 4864 opt: 4864 Z-score: 3942.9 bits: 740.2 E(): 6.5e-211 Smith-Waterman score: 4864; 99.863% identity (99.863% similar) in 730 aa overlap (6-735:1-730) 10 20 30 40 50 60 mKIAA1 PPPPGMLMPPMPGPGPGPGPGPGPGPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPPI ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 MLMPPMPGPGPGPGPGPGPGPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPPI 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 SQSSLINSRDQPGTSAVPNLAPVGARLPPPLPQNLLYTVSERQPMYSREHGAAASERLQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SQSSLINSRDQPGTSAVPNLAPVGARLPPPLPQNLLYTVSERQPMYSREHGAAASERLQL 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 GTPPPLLAARLVPPRNLMGSSIGYHTSVSSPTPLVPDTYEPDGYNPEAPSITSSGRSQYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GTPPPLLAARLVPPRNLMGSSIGYHTSVSSPTPLVPDTYEPDGYNPEAPSITSSGRSQYR 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 QFFSRAQTQRPNLIGLTSGDMDANPRAANIVIQTEPPVPVSVNSNVTRVVLEPESRKRAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QFFSRAQTQRPNLIGLTSGDMDANPRAANIVIQTEPPVPVSVNSNVTRVVLEPESRKRAI 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 SGLEGPLTKKPWLGKQGNNNQSKPGFLRKNHYTNTKLEVKKIPQELNNITKLNEHFSKFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SGLEGPLTKKPWLGKQGNNNQSKPGFLRKNHYTNTKLEVKKIPQELNNITKLNEHFSKFG 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 TIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRENNEQPALQSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRENNEQPALQSSA 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 QILLQQQHTLSHLSQQHHSLPQHLHPQQVMVTQSSPSSVHGGIQKMMGKPQTSGAYVLNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QILLQQQHTLSHLSQQHHSLPQHLHPQQVMVTQSSPSSVHGGIQKMMGKPQTSGAYVLNK 360 370 380 390 400 410 430 440 450 460 470 480 mKIAA1 VPVKHRLGHASTNQSDTSHLLNQTGGSSGEDCPVFSTPGHPKTIYSSSNLKAPSKLCSGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VPVKHRLGHASTNQSDTSHLLNQTGGSSGEDCPVFSTPGHPKTIYSSSNLKAPSKLCSGS 420 430 440 450 460 470 490 500 510 520 530 540 mKIAA1 KSHDVQEVLKKKQEAMKLQQDMRKKKQEMLEKQIECQKMLISKLEKNKNMKPEERANIMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KSHDVQEVLKKKQEAMKLQQDMRKKKQEMLEKQIECQKMLISKLEKNKNMKPEERANIMK 480 490 500 510 520 530 550 560 570 580 590 600 mKIAA1 TLKELGEKISQLKDELKTSSTVSTPSKVKTKTEAQKELLDTELYLHKRLSSGEDTTELRK ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: gi|148 TLKELGEKISQLKDELKTSSTVSTPSKVKTKTEAQKELLDTELDLHKRLSSGEDTTELRK 540 550 560 570 580 590 610 620 630 640 650 660 mKIAA1 KLSQLQVEAARLGILPVGRGKTISSQGRGRGRGRGRGRGSLNHMVVDHRPKALPGGGFIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KLSQLQVEAARLGILPVGRGKTISSQGRGRGRGRGRGRGSLNHMVVDHRPKALPGGGFIE 600 610 620 630 640 650 670 680 690 700 710 720 mKIAA1 EEKDELLQHFSATNQASKFKDRRLQISWHKPKVPSISTETEEEEVKEEETETSDLFLHDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EEKDELLQHFSATNQASKFKDRRLQISWHKPKVPSISTETEEEEVKEEETETSDLFLHDD 660 670 680 690 700 710 730 mKIAA1 DDEDEDEYESRSWRR ::::::::::::::: gi|148 DDEDEDEYESRSWRR 720 730 >>gi|73949478|ref|XP_544327.2| PREDICTED: similar to cut (1060 aa) initn: 3400 init1: 3400 opt: 4651 Z-score: 3768.7 bits: 708.5 E(): 3.3e-201 Smith-Waterman score: 4651; 93.886% identity (98.098% similar) in 736 aa overlap (1-735:326-1060) 10 20 30 mKIAA1 PPPPGMLMPPMPGPGPGPGPGPGPGPGPGP :::::::::::::::::::::::::::::: gi|739 FDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGP 300 310 320 330 340 350 40 50 60 70 80 90 mKIAA1 GPGHSMRLPVPQGHGQPPPSVVLPIPRPPISQSSLINSRDQPGTSAVPNLAPVGARLPPP ::::::::::::::::::::::::::::::.::::::.:::::::::::::::::::::: gi|739 GPGHSMRLPVPQGHGQPPPSVVLPIPRPPITQSSLINNRDQPGTSAVPNLAPVGARLPPP 360 370 380 390 400 410 100 110 120 130 140 150 mKIAA1 LPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSS :::::::.:::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|739 LPQNLLYAVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGTSIGYHTSVSS 420 430 440 450 460 470 160 170 180 190 200 210 mKIAA1 PTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANI :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|739 PTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRTQTQRPNLIGLTSGDMDANPRAANI 480 490 500 510 520 530 220 230 240 250 260 270 mKIAA1 VIQTEPPVPVSVNSNVTRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKN :::::::::::.:::.:::::::.:::::::::::::::::::::::::.:::::::::: gi|739 VIQTEPPVPVSINSNITRVVLEPDSRKRAISGLEGPLTKKPWLGKQGNNSQSKPGFLRKN 540 550 560 570 580 590 280 290 300 310 320 330 mKIAA1 HYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAI .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 QYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAI 600 610 620 630 640 650 340 350 360 370 380 390 mKIAA1 SSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTLSHLSQQHHSLPQHLHPQQVM ::::::::::::::::::::::: :::: .:.:::::.:::::::::: :::::: :::. gi|739 SSTEAVLNNRFIRVLWHRENNEQSALQSPTQLLLQQQQTLSHLSQQHHHLPQHLHQQQVL 660 670 680 690 700 710 400 410 420 430 440 450 mKIAA1 VTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHASTNQSDTSHLLNQTGGSSGE :.:: ::.:::::::::.:::::::::::::::::::::.: :::::::::::.::. :: gi|739 VAQSPPSTVHGGIQKMMSKPQTSGAYVLNKVPVKHRLGHTSGNQSDTSHLLNQSGGA-GE 720 730 740 750 760 770 460 470 480 490 500 510 mKIAA1 DCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKKQEML :: .::.::::: ::::::::.:::::::::::::::::::::::::::::::::.::.: gi|739 DCQIFSAPGHPKMIYSSSNLKTPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQEVL 780 790 800 810 820 830 520 530 540 550 560 570 mKIAA1 EKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSTVSTPSKVKT ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|739 EKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSAVSTPSKVKT 840 850 860 870 880 890 580 590 600 610 620 630 mKIAA1 KTEAQKELLDTELYLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTISSQGRGR ::::::::::::: ::::::::::::::::::::::::::::::::::::::.::::::: gi|739 KTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQGRGR 900 910 920 930 940 950 640 650 660 670 680 mKIAA1 GRGRG-RGRGSLNHMVVDHRPKALPGGGFIEEEKDELLQHFSATNQASKFKDRRLQISWH ::::: :::::::::::::::::: ::::::::::::::::..::.::::::::::::: gi|739 GRGRGGRGRGSLNHMVVDHRPKALTVGGFIEEEKDELLQHFSTANQGSKFKDRRLQISWH 960 970 980 990 1000 1010 690 700 710 720 730 mKIAA1 KPKVPSISTETEEEEVKEEETETSDLFLHDDDDEDEDEYESRSWRR : ::::.::::::::::::::::::::::::::::::::::::::: gi|739 KAKVPSVSTETEEEEVKEEETETSDLFLHDDDDEDEDEYESRSWRR 1020 1030 1040 1050 1060 >>gi|109079178|ref|XP_001100227.1| PREDICTED: similar to (1060 aa) initn: 3394 init1: 3394 opt: 4650 Z-score: 3767.9 bits: 708.3 E(): 3.6e-201 Smith-Waterman score: 4650; 93.886% identity (98.234% similar) in 736 aa overlap (1-735:326-1060) 10 20 30 mKIAA1 PPPPGMLMPPMPGPGPGPGPGPGPGPGPGP :::::::::::::::::::::::::::::: gi|109 FDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGP 300 310 320 330 340 350 40 50 60 70 80 90 mKIAA1 GPGHSMRLPVPQGHGQPPPSVVLPIPRPPISQSSLINSRDQPGTSAVPNLAPVGARLPPP ::::::::::::::::::::::::::::::.:::::::::::::::::::: ::.::::: gi|109 GPGHSMRLPVPQGHGQPPPSVVLPIPRPPITQSSLINSRDQPGTSAVPNLASVGTRLPPP 360 370 380 390 400 410 100 110 120 130 140 150 mKIAA1 LPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSS 420 430 440 450 460 470 160 170 180 190 200 210 mKIAA1 PTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANI :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|109 PTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRTQTQRPNLIGLTSGDMDANPRAANI 480 490 500 510 520 530 220 230 240 250 260 270 mKIAA1 VIQTEPPVPVSVNSNVTRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKN :::::::::::.:::.:::::::.:::::.:::.:::::::::::::::::.:::::::: gi|109 VIQTEPPVPVSINSNITRVVLEPDSRKRAMSGLDGPLTKKPWLGKQGNNNQNKPGFLRKN 540 550 560 570 580 590 280 290 300 310 320 330 mKIAA1 HYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAI .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAI 600 610 620 630 640 650 340 350 360 370 380 390 mKIAA1 SSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTLSHLSQQHHSLPQHLHPQQVM ::::::::::::::::::::::::.::::::.:::::.:::::::::: :::::: :::. gi|109 SSTEAVLNNRFIRVLWHRENNEQPTLQSSAQLLLQQQQTLSHLSQQHHHLPQHLHQQQVL 660 670 680 690 700 710 400 410 420 430 440 450 mKIAA1 VTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHASTNQSDTSHLLNQTGGSSGE :.::.::.:::::::::.::::::::::::::::::::::. ::::.::::::.::. :: gi|109 VAQSAPSTVHGGIQKMMSKPQTSGAYVLNKVPVKHRLGHAGGNQSDASHLLNQSGGA-GE 720 730 740 750 760 770 460 470 480 490 500 510 mKIAA1 DCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKKQEML :: .:::::::: ::::::::.:::::::::::::::::::::::::::::::::.::.: gi|109 DCQIFSTPGHPKLIYSSSNLKTPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQEVL 780 790 800 810 820 830 520 530 540 550 560 570 mKIAA1 EKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSTVSTPSKVKT ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|109 EKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSAVSTPSKVKT 840 850 860 870 880 890 580 590 600 610 620 630 mKIAA1 KTEAQKELLDTELYLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTISSQGRGR ::::::::::::: ::::::::::::::::::::::::::::::::::::::.::::::: gi|109 KTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQGRGR 900 910 920 930 940 950 640 650 660 670 680 mKIAA1 GRGRG-RGRGSLNHMVVDHRPKALPGGGFIEEEKDELLQHFSATNQASKFKDRRLQISWH ::::: :::::::::::::::::: ::::::::..:::::::.::. :::::::::::: gi|109 GRGRGGRGRGSLNHMVVDHRPKALTVGGFIEEEKEDLLQHFSAANQGPKFKDRRLQISWH 960 970 980 990 1000 1010 690 700 710 720 730 mKIAA1 KPKVPSISTETEEEEVKEEETETSDLFLHDDDDEDEDEYESRSWRR :::::::::::::::::::::::::::: ::::::::::::::::: gi|109 KPKVPSISTETEEEEVKEEETETSDLFLPDDDDEDEDEYESRSWRR 1020 1030 1040 1050 1060 >>gi|114602547|ref|XP_527062.2| PREDICTED: RNA binding m (1060 aa) initn: 3394 init1: 3394 opt: 4649 Z-score: 3767.1 bits: 708.2 E(): 4e-201 Smith-Waterman score: 4649; 93.886% identity (98.234% similar) in 736 aa overlap (1-735:326-1060) 10 20 30 mKIAA1 PPPPGMLMPPMPGPGPGPGPGPGPGPGPGP :::::::::::::::::::::::::::::: gi|114 FDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGP 300 310 320 330 340 350 40 50 60 70 80 90 mKIAA1 GPGHSMRLPVPQGHGQPPPSVVLPIPRPPISQSSLINSRDQPGTSAVPNLAPVGARLPPP ::::::::::::::::::::::::::::::.:::::::::::::::::::: ::.::::: gi|114 GPGHSMRLPVPQGHGQPPPSVVLPIPRPPITQSSLINSRDQPGTSAVPNLASVGTRLPPP 360 370 380 390 400 410 100 110 120 130 140 150 mKIAA1 LPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSS 420 430 440 450 460 470 160 170 180 190 200 210 mKIAA1 PTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANI :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|114 PTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRTQTQRPNLIGLTSGDMDANPRAANI 480 490 500 510 520 530 220 230 240 250 260 270 mKIAA1 VIQTEPPVPVSVNSNVTRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKN :::::::::::.:::.:::::::.:::::.:::::::::::::::::::::.:::::::: gi|114 VIQTEPPVPVSINSNITRVVLEPDSRKRAMSGLEGPLTKKPWLGKQGNNNQNKPGFLRKN 540 550 560 570 580 590 280 290 300 310 320 330 mKIAA1 HYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAI .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAI 600 610 620 630 640 650 340 350 360 370 380 390 mKIAA1 SSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTLSHLSQQHHSLPQHLHPQQVM ::::::::::::::::::::::::.::::::.:::::.:::::::::: :::::: :::. gi|114 SSTEAVLNNRFIRVLWHRENNEQPTLQSSAQLLLQQQQTLSHLSQQHHHLPQHLHQQQVL 660 670 680 690 700 710 400 410 420 430 440 450 mKIAA1 VTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHASTNQSDTSHLLNQTGGSSGE :.::.::.:::::::::.::::::::::::::::::::::. ::::.::::::.::. :: gi|114 VAQSAPSTVHGGIQKMMSKPQTSGAYVLNKVPVKHRLGHAGGNQSDASHLLNQSGGA-GE 720 730 740 750 760 770 460 470 480 490 500 510 mKIAA1 DCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKKQEML :: .:::::::: ::::::::.:::::::::::::::::::::::::::::::::.::.: gi|114 DCQIFSTPGHPKMIYSSSNLKTPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQEVL 780 790 800 810 820 830 520 530 540 550 560 570 mKIAA1 EKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSTVSTPSKVKT ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|114 EKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSAVSTPSKVKT 840 850 860 870 880 890 580 590 600 610 620 630 mKIAA1 KTEAQKELLDTELYLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTISSQGRGR ::::::::::::: ::::::::::::::::::::::::::::::::::::::.::::::: gi|114 KTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQGRGR 900 910 920 930 940 950 640 650 660 670 680 mKIAA1 GRGRG-RGRGSLNHMVVDHRPKALPGGGFIEEEKDELLQHFSATNQASKFKDRRLQISWH ::::: :::::::::::::::::: ::::::::..::::::..::. :::::::::::: gi|114 GRGRGGRGRGSLNHMVVDHRPKALTVGGFIEEEKEDLLQHFSTANQGPKFKDRRLQISWH 960 970 980 990 1000 1010 690 700 710 720 730 mKIAA1 KPKVPSISTETEEEEVKEEETETSDLFLHDDDDEDEDEYESRSWRR :::::::::::::::::::::::::::: ::::::::::::::::: gi|114 KPKVPSISTETEEEEVKEEETETSDLFLPDDDDEDEDEYESRSWRR 1020 1030 1040 1050 1060 >>gi|119582248|gb|EAW61844.1| POU domain, class 4, trans (748 aa) initn: 3389 init1: 3389 opt: 4644 Z-score: 3764.9 bits: 707.3 E(): 5.4e-201 Smith-Waterman score: 4644; 93.750% identity (98.234% similar) in 736 aa overlap (1-735:14-748) 10 20 30 40 mKIAA1 PPPPGMLMPPMPGPGPGPGPGPGPGPGPGPGPGHSMRLPVPQGHGQP ::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGPGPGHSMRLPVPQGHGQP 10 20 30 40 50 60 50 60 70 80 90 100 mKIAA1 PPSVVLPIPRPPISQSSLINSRDQPGTSAVPNLAPVGARLPPPLPQNLLYTVSERQPMYS :::::::::::::.:::::::::::::::::::: ::.:::::::::::::::::::::: gi|119 PPSVVLPIPRPPITQSSLINSRDQPGTSAVPNLASVGTRLPPPLPQNLLYTVSERQPMYS 70 80 90 100 110 120 110 120 130 140 150 160 mKIAA1 REHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSSPTPLVPDTYEPDGYNPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 REHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSSPTPLVPDTYEPDGYNPE 130 140 150 160 170 180 170 180 190 200 210 220 mKIAA1 APSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANIVIQTEPPVPVSVNSNVT ::::::::::::::::::.::::::::::::::::.::::::::::::::::::.:::.: gi|119 APSITSSGRSQYRQFFSRTQTQRPNLIGLTSGDMDVNPRAANIVIQTEPPVPVSINSNIT 190 200 210 220 230 240 230 240 250 260 270 280 mKIAA1 RVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKNHYTNTKLEVKKIPQELN ::::::.:::::.:::::::::::::::::::::.::::::::.:::::::::::::::: gi|119 RVVLEPDSRKRAMSGLEGPLTKKPWLGKQGNNNQNKPGFLRKNQYTNTKLEVKKIPQELN 250 260 270 280 290 300 290 300 310 320 330 340 mKIAA1 NITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWH 310 320 330 340 350 360 350 360 370 380 390 400 mKIAA1 RENNEQPALQSSAQILLQQQHTLSHLSQQHHSLPQHLHPQQVMVTQSSPSSVHGGIQKMM :::::::.::::::.:::::.:::::::::: :::::: :::.:.::.::.::::::::: gi|119 RENNEQPTLQSSAQLLLQQQQTLSHLSQQHHHLPQHLHQQQVLVAQSAPSTVHGGIQKMM 370 380 390 400 410 420 410 420 430 440 450 460 mKIAA1 GKPQTSGAYVLNKVPVKHRLGHASTNQSDTSHLLNQTGGSSGEDCPVFSTPGHPKTIYSS .::::::::::::::::::::::. ::::.::::::.::. :::: .:::::::: :::: gi|119 SKPQTSGAYVLNKVPVKHRLGHAGGNQSDASHLLNQSGGA-GEDCQIFSTPGHPKMIYSS 430 440 450 460 470 470 480 490 500 510 520 mKIAA1 SNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKKQEMLEKQIECQKMLISKLEKN ::::.:::::::::::::::::::::::::::::::::.::.:::::::::::::::::: gi|119 SNLKTPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQEVLEKQIECQKMLISKLEKN 480 490 500 510 520 530 530 540 550 560 570 580 mKIAA1 KNMKPEERANIMKTLKELGEKISQLKDELKTSSTVSTPSKVKTKTEAQKELLDTELYLHK :::::::::::::::::::::::::::::::::.:::::::::::::::::::::: ::: gi|119 KNMKPEERANIMKTLKELGEKISQLKDELKTSSAVSTPSKVKTKTEAQKELLDTELDLHK 540 550 560 570 580 590 590 600 610 620 630 640 mKIAA1 RLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTISSQGRGRGRGRG-RGRGSLNHMVV :::::::::::::::::::::::::::::::::::.:::::::::::: ::::::::::: gi|119 RLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQGRGRGRGRGGRGRGSLNHMVV 600 610 620 630 640 650 650 660 670 680 690 700 mKIAA1 DHRPKALPGGGFIEEEKDELLQHFSATNQASKFKDRRLQISWHKPKVPSISTETEEEEVK ::::::: ::::::::..::::::..::. ::::::::::::::::::::::::::::: gi|119 DHRPKALTVGGFIEEEKEDLLQHFSTANQGPKFKDRRLQISWHKPKVPSISTETEEEEVK 660 670 680 690 700 710 710 720 730 mKIAA1 EEETETSDLFLHDDDDEDEDEYESRSWRR ::::::::::: ::::::::::::::::: gi|119 EEETETSDLFLPDDDDEDEDEYESRSWRR 720 730 740 >>gi|124021005|sp|Q9P2N5.2|RBM27_HUMAN RecName: Full=RNA (1060 aa) initn: 3389 init1: 3389 opt: 4644 Z-score: 3763.0 bits: 707.4 E(): 6.8e-201 Smith-Waterman score: 4644; 93.750% identity (98.234% similar) in 736 aa overlap (1-735:326-1060) 10 20 30 mKIAA1 PPPPGMLMPPMPGPGPGPGPGPGPGPGPGP :::::::::::::::::::::::::::::: gi|124 FDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGP 300 310 320 330 340 350 40 50 60 70 80 90 mKIAA1 GPGHSMRLPVPQGHGQPPPSVVLPIPRPPISQSSLINSRDQPGTSAVPNLAPVGARLPPP ::::::::::::::::::::::::::::::.:::::::::::::::::::: ::.::::: gi|124 GPGHSMRLPVPQGHGQPPPSVVLPIPRPPITQSSLINSRDQPGTSAVPNLASVGTRLPPP 360 370 380 390 400 410 100 110 120 130 140 150 mKIAA1 LPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 LPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSS 420 430 440 450 460 470 160 170 180 190 200 210 mKIAA1 PTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANI :::::::::::::::::::::::::::::::::::.::::::::::::::::.::::::: gi|124 PTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRTQTQRPNLIGLTSGDMDVNPRAANI 480 490 500 510 520 530 220 230 240 250 260 270 mKIAA1 VIQTEPPVPVSVNSNVTRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKN :::::::::::.:::.:::::::.:::::.:::::::::::::::::::::.:::::::: gi|124 VIQTEPPVPVSINSNITRVVLEPDSRKRAMSGLEGPLTKKPWLGKQGNNNQNKPGFLRKN 540 550 560 570 580 590 280 290 300 310 320 330 mKIAA1 HYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAI .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 QYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAI 600 610 620 630 640 650 340 350 360 370 380 390 mKIAA1 SSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTLSHLSQQHHSLPQHLHPQQVM ::::::::::::::::::::::::.::::::.:::::.:::::::::: :::::: :::. gi|124 SSTEAVLNNRFIRVLWHRENNEQPTLQSSAQLLLQQQQTLSHLSQQHHHLPQHLHQQQVL 660 670 680 690 700 710 400 410 420 430 440 450 mKIAA1 VTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHASTNQSDTSHLLNQTGGSSGE :.::.::.:::::::::.::::::::::::::::::::::. ::::.::::::.::. :: gi|124 VAQSAPSTVHGGIQKMMSKPQTSGAYVLNKVPVKHRLGHAGGNQSDASHLLNQSGGA-GE 720 730 740 750 760 770 460 470 480 490 500 510 mKIAA1 DCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKKQEML :: .:::::::: ::::::::.:::::::::::::::::::::::::::::::::.::.: gi|124 DCQIFSTPGHPKMIYSSSNLKTPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQEVL 780 790 800 810 820 830 520 530 540 550 560 570 mKIAA1 EKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSTVSTPSKVKT ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|124 EKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSAVSTPSKVKT 840 850 860 870 880 890 580 590 600 610 620 630 mKIAA1 KTEAQKELLDTELYLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTISSQGRGR ::::::::::::: ::::::::::::::::::::::::::::::::::::::.::::::: gi|124 KTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQGRGR 900 910 920 930 940 950 640 650 660 670 680 mKIAA1 GRGRG-RGRGSLNHMVVDHRPKALPGGGFIEEEKDELLQHFSATNQASKFKDRRLQISWH ::::: :::::::::::::::::: ::::::::..::::::..::. :::::::::::: gi|124 GRGRGGRGRGSLNHMVVDHRPKALTVGGFIEEEKEDLLQHFSTANQGPKFKDRRLQISWH 960 970 980 990 1000 1010 690 700 710 720 730 mKIAA1 KPKVPSISTETEEEEVKEEETETSDLFLHDDDDEDEDEYESRSWRR :::::::::::::::::::::::::::: ::::::::::::::::: gi|124 KPKVPSISTETEEEEVKEEETETSDLFLPDDDDEDEDEYESRSWRR 1020 1030 1040 1050 1060 >>gi|194219755|ref|XP_001503958.2| PREDICTED: RNA bindin (1061 aa) initn: 3309 init1: 3309 opt: 4623 Z-score: 3746.0 bits: 704.3 E(): 6e-200 Smith-Waterman score: 4623; 93.360% identity (97.696% similar) in 738 aa overlap (1-735:325-1061) 10 20 30 mKIAA1 PPPPGMLMPPMPGPGPGPGPGPGPGPGPGP :::::::::::::::::::::::::::::: gi|194 FDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGP 300 310 320 330 340 350 40 50 60 70 80 mKIAA1 GPG--HSMRLPVPQGHGQPPPSVVLPIPRPPISQSSLINSRDQPGTSAVPNLAPVGARLP ::: :::::::::::::::::::::::::::.::::::.:::::::::::::::::::: gi|194 GPGPGHSMRLPVPQGHGQPPPSVVLPIPRPPITQSSLINNRDQPGTSAVPNLAPVGARLP 360 370 380 390 400 410 90 100 110 120 130 140 mKIAA1 PPLPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSV ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 PPLSQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSV 420 430 440 450 460 470 150 160 170 180 190 200 mKIAA1 SSPTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAA :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|194 SSPTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRTQTQRPNLIGLTSGDMDANPRAA 480 490 500 510 520 530 210 220 230 240 250 260 mKIAA1 NIVIQTEPPVPVSVNSNVTRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLR :::::::::::::.:::.:::::::.:::::.:::::::::::::::::::::::::::: gi|194 NIVIQTEPPVPVSINSNITRVVLEPDSRKRAMSGLEGPLTKKPWLGKQGNNNQSKPGFLR 540 550 560 570 580 590 270 280 290 300 310 320 mKIAA1 KNHYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARK ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 KNQYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARK 600 610 620 630 640 650 330 340 350 360 370 380 mKIAA1 AISSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTLSHLSQQHHSLPQHLHPQQ :::::::::::::::::::::::::::::: .:.:::::.:::::::::: :::::: :: gi|194 AISSTEAVLNNRFIRVLWHRENNEQPALQSPTQLLLQQQQTLSHLSQQHHHLPQHLHQQQ 660 670 680 690 700 710 390 400 410 420 430 440 mKIAA1 VMVTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHASTNQSDTSHLLNQTGGSS :.:.:: ::.:::::::::.::::::.:::::::::::::::. ::::..:::::..:. gi|194 VLVAQSPPSTVHGGIQKMMSKPQTSGTYVLNKVPVKHRLGHAGGNQSDAAHLLNQSSGA- 720 730 740 750 760 770 450 460 470 480 490 500 mKIAA1 GEDCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKKQE :::: .:::::::: ::::::::.:::::::::::::::::::::::::::::::::.:: gi|194 GEDCQMFSTPGHPKMIYSSSNLKTPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQE 780 790 800 810 820 830 510 520 530 540 550 560 mKIAA1 MLEKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSTVSTPSKV .:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|194 VLEKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSAVSTPSKV 840 850 860 870 880 890 570 580 590 600 610 620 mKIAA1 KTKTEAQKELLDTELYLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTISSQGR ::::::::::::::: ::::::::::::::::::.:::::::::::::::::::.::::: gi|194 KTKTEAQKELLDTELDLHKRLSSGEDTTELRKKLNQLQVEAARLGILPVGRGKTMSSQGR 900 910 920 930 940 950 630 640 650 660 670 680 mKIAA1 GRGRGRG-RGRGSLNHMVVDHRPKALPGGGFIEEEKDELLQHFSATNQASKFKDRRLQIS ::::::: :::::::::::::::::: :::::::::::::::::.::.::::::::::: gi|194 GRGRGRGGRGRGSLNHMVVDHRPKALTVGGFIEEEKDELLQHFSAANQGSKFKDRRLQIS 960 970 980 990 1000 1010 690 700 710 720 730 mKIAA1 WHKPKVPSISTETEEEEVKEEETETSDLFLHDDDDEDEDEYESRSWRR ::: ::::.::::::::::::: ::::::::::::::::::::::::: gi|194 WHKAKVPSVSTETEEEEVKEEEPETSDLFLHDDDDEDEDEYESRSWRR 1020 1030 1040 1050 1060 735 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 16:30:47 2009 done: Fri Mar 13 16:38:43 2009 Total Scan time: 1051.810 Total Display time: 0.360 Function used was FASTA [version 34.26.5 April 26, 2007]