FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4105.ptfa, 249 aa
 vs ./tmplib.26680 library

1768768 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.5901+/-0.00433; mu= 8.8493+/- 0.290
 mean_var=96.3520+/-22.298, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1307

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0609  ( 740 res)   mbg01890                   ( 740)  834  167 2.3e-42


>>mKIAA0609  ( 740 res)   mbg01890                        (740 aa)
 initn: 542 init1: 542 opt: 834  Z-score: 853.0  bits: 166.9 E(): 2.3e-42
Smith-Waterman score: 834;  58.636% identity (61.722% ungapped) in 220 aa overlap (31-249:401-610)

               10        20        30        40        50        60
mKIAA4 WEATAKRALWMPQPVPSWGRAGEMGPCWLAFGRSCPSVLKDMLFFRSWNPAQLQQALTQL
                                     ::  :::   :.      :  .::. :..:
mKIAA0 LRVKNKHVEFFRNLYLTFLEYDGNLLRRELFG--CPSET-DV------NNENLQKQLSEL
              380       390       400                410       420 

               70        80         90       100       110         
mKIAA4 DEEEPCFEFRQQQLTVHRVHITFLPHQ-PPPPQPHDVTLVAQLSMDRLQMLEALCGHWPG
       ::.. :.:::....::::.:. :: ..  :  .  ::::::::::::::::::.: :: :
mKIAA0 DEDDLCYEFRRERFTVHRTHLYFLHYEFEPSADNTDVTLVAQLSMDRLQMLEAICKHWEG
             430       440       450       460       470       480 

     120       130       140       150       160       170         
mKIAA4 PMSLALYLTDEEAQQFLHFVETSPVLSMRKDVAYHVVYRDGPLYPVNQLRNVALAQALTP
       :.::::::.: ::::::.... : ::  :..:.::.::..: .:::: :::::. .  ::
mKIAA0 PISLALYLSDAEAQQFLRYAQGSEVLMSRQNVGYHIVYKEGQFYPVNLLRNVAMKHISTP
             490       500       510       520       530       540 

     180       190       200       210       220       230         
mKIAA4 YVFLSDIDFLPAYSLYDYLRASIEQLELDSRRKTALVVPAFETLHYRFSFPNSKAELLTL
       :.::::::::: :.::.::: :. ::.: . .: :..:::::::.::.:::.::::::..
mKIAA0 YMFLSDIDFLPMYGLYEYLRKSVIQLDLANTKK-AMIVPAFETLRYRLSFPKSKAELLSM
             550       560       570        580       590       600

     240                                                           
mKIAA4 LDAGSLHTFR                                                  
       :: :.: :::                                                  
mKIAA0 LDMGTLFTFRYHVWTKGHAPTNFAKWRTATTPYQVEWEADFEPYVVVRRDCPEYDRRFVG
              610       620       630       640       650       660




249 residues in 1 query   sequences
1768768 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:02:02 2006 done: Mon Mar 27 11:02:03 2006
 Scan time:  0.470 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]