FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1008.ptfa, 451 aa vs ./tmplib.26680 library 1768566 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.9416+/-0.00383; mu= 12.6742+/- 0.256 mean_var=80.1619+/-18.159, 0's: 0 Z-trim: 4 B-trim: 0 in 0/36 Lambda= 0.1432 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1955 ( 1073 res) mtj00267 (1073) 892 194 3.4e-50 mFLJ00327 ( 881 res) mid41093 ( 881) 561 126 1.1e-29 mKIAA1769 ( 1622 res) mtg00072 (1622) 297 72 4.7e-13 >>mKIAA1955 ( 1073 res) mtj00267 (1073 aa) initn: 899 init1: 362 opt: 892 Z-score: 993.6 bits: 194.3 E(): 3.4e-50 Smith-Waterman score: 984; 41.606% identity (45.722% ungapped) in 411 aa overlap (58-447:210-604) 30 40 50 60 70 80 mKIAA1 SCQKTTIHVSSRLNTVPRYLNLKIVTYFSGEEYVKSLTANPELIDRLAYLSDEMNEIES- ... .: : .: : . : . : :: mKIAA1 IVMVTEDEEAIQKYGSETEGVFVISFKNYLDNFWPDLKAAHDLCDSILQ-SRRERETESQ 180 190 200 210 220 230 90 100 110 120 130 mKIAA1 ---GKIIFSEHLPLSKLQQGIKSGSYLQGTFRASREN-YLEATVWIHGDKEEE----KEI :: . ::::: :. ::::: :.:: . .... .:: : .:: . .. ..: mKIAA1 ETHGKE-YPEHLPLEVLEAGIKSGRYIQGILNVNKHRAQIEAFVRLHGASSKDSGLVSDI 240 250 260 270 280 290 140 150 160 170 180 190 mKIAA1 LIQGIKHLNRAVHEDIVAVELLPRSQWVAPSSVVLDDEGQNEDDVEKDEERELLLKTAVS ::.: : ::..: :.:.::.::.:.: . .... :.:..: . . : : mKIAA1 LIHGSKARNRSIHGDVVVVEMLPKSEWKGRTAAL----GENDSDDKASGESP-------S 300 310 320 330 340 200 210 220 230 240 250 mKIAA1 EKMLRPTGRVVGIIKRNWRPYCGML-SKSDI----KESRRHLFTPADKRIPRIRIETRQA : : ::::::::...::: : . :: .. :.... : :: : :::.::: :.:: mKIAA1 EPM--PTGRVVGILQKNWRDYVVTFPSKEEVQSQGKNAQKILVTPWDYRIPKIRISTQQA 350 360 370 380 390 400 260 270 280 290 300 310 mKIAA1 SALEGRRIIVAIDGWPRNSRYPNGHFVKNLGDVGEKETETEVLLLEHDVPHQPFSQAVLS ::. :..: ::.: .: :::::::. :: .:. : : ..:.:... :::.: . mKIAA1 EALQDFRVVVRIDSWEATSVYPNGHFVRVLGRIGDLEGEIATILVENSISVVPFSEAQMC 410 420 430 440 450 460 320 330 340 350 360 mKIAA1 FLP----RMPWSITEEDMKNREDLR--HLCVCSVDPPGCTDIDDALHCRELSNGNLEVGV .: . ::... .. ..:.::: :: : :.:: :: :.::.: : :.:::::.:: mKIAA1 EMPVNTPENPWKVSPKEEQERKDLRTTHL-VFSIDPKGCEDVDDTLSVRTLNNGNLELGV 470 480 490 500 510 520 370 380 390 400 410 420 mKIAA1 HIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLRSNVDRLAFSCIW :::::.::. :.. .: :. :.:: :: ..: ::.: .::..:::: ..::: : : .: mKIAA1 HIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLPSILSADLCSLLGGVDRYAVSVMW 530 540 550 560 570 580 430 440 450 mKIAA1 EMNHNA-EILKTRFTKSVINSKVSV :..... :: :. . ...: : mKIAA1 ELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNFSIVDDIPELKALDKQSQQAKLE 590 600 610 620 630 640 >>mFLJ00327 ( 881 res) mid41093 (881 aa) initn: 642 init1: 433 opt: 561 Z-score: 625.0 bits: 125.8 E(): 1.1e-29 Smith-Waterman score: 668; 31.377% identity (38.936% ungapped) in 443 aa overlap (88-447:58-497) 60 70 80 90 100 110 mKIAA1 EEYVKSLTANPELIDRLAYLSDEMNEIESGKIIFSEHLPLSKLQQGIKSGSYLQGTFRAS : :: .. ...:.: :. .::..: . mFLJ00 RGVSSVVGPSAVGASPGDKKSKNKSMRGKKKSIFETYMSKEDVSEGLKRGTLIQGVLRIN 30 40 50 60 70 80 120 130 140 150 160 170 mKIAA1 RENYLEATVWIHGDKEEEKEILIQGIKHLNRAVHEDIVAVELLPRSQW--VAPSS----- ... :: . . . ...:.:.:. :::.. :.:.:.:::..:: : : : mFLJ00 PKKFHEAFI---PSPDGDRDIFIDGVVARNRALNGDLVVVKLLPEDQWKAVKPESNDKEI 90 100 110 120 130 140 180 mKIAA1 -----------------------------VVLD---DEGQNED----------------- :... :....:: mFLJ00 EATYEADIPEEGCGHHPLQQSRKGWSGPDVIIEAQFDDSDSEDRHGNTSGLVDGVKKLSI 150 160 170 180 190 200 190 200 210 220 mKIAA1 ------------DVEKDEERELLLKT-AVSEKMLRPTGRVVGII-KRNWRPYCGMLSKSD : :::. . : ..::: :. ...:: :. :.. : :.:. mFLJ00 STPDRGKEDSSTPVMKDENTPIPQDTRGLSEKSLQKSAKVVYILEKKHSRAATGILKLLA 210 220 230 240 250 260 230 240 250 260 270 mKIAA1 IKES----RRHLFTPADKRIPRIRIETR--------QASALEGRRIIVAIDGWPRNSRYP :.: . ::.:.:.:.::: . . . . . . .: : : .. . mFLJ00 DKNSDLFKKYALFSPSDHRVPRIYVPLKDCPQDFMTRPKDFANTLFICRIIDWKEDCNFA 270 280 290 300 310 320 280 290 300 310 320 330 mKIAA1 NGHFVKNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPR-MPWSITEEDMKNREDLR :...:.::..:: : ::: .: :. : . ::. :: ::. .::.: ... .:.::: mFLJ00 LGQLAKSLGQAGEIEPETEGILTEYGVDFSDFSSEVLECLPQSLPWTIPPDEVGKRRDLR 330 340 350 360 370 380 340 350 360 370 380 390 mKIAA1 HLCVCSVDPPGCTDIDDALHCRELSNGNLEVGVHIADVSHFIRPGNALDQESARRGTTVY . :. ..:: :.:::: ::.:..:..::::::::::.:. :..::. .:.:.:.:: mFLJ00 KDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVY 390 400 410 420 430 440 400 410 420 430 440 450 mKIAA1 LCEKRIDMVPELLSSNLCSLRSNVDRLAFSCIWEMNHNAEILKTRFTKSVINSKVSV : .: . :.:.:: .:::: .:.:.:: ::... ...::. : ...: : mFLJ00 LVQKVVPMLPRLLCEELCSLNPMTDKLTFSVIWKLTPEGKILEEWFGRTIIRSCTKLSYD 450 460 470 480 490 500 mFLJ00 HAQSMIENPTEKIPEEELPPISPEHSVEEVHQAVLNLHSIAKQLRRQRFVDGALRLDQLK 510 520 530 540 550 560 >>mKIAA1769 ( 1622 res) mtg00072 (1622 aa) initn: 231 init1: 120 opt: 297 Z-score: 326.8 bits: 71.5 E(): 4.7e-13 Smith-Waterman score: 304; 30.827% identity (34.167% ungapped) in 266 aa overlap (206-447:318-581) 180 190 200 210 220 mKIAA1 EGQNEDDVEKDEERELLLKTAVSEKMLRPTGRVVGIIKR------------NWRPYC--- :::.:..:: .: : mKIAA1 NCGMAFTGDEVLVQILGPAGDDRCVPGSLQGRVMGVLKRRRHELAFVCRMDEWDPRIMIP 290 300 310 320 330 340 230 240 250 260 270 mKIAA1 --GMLSKSDIKESRRHLFTPADK----RIPRIRIETRQASALEGRRIIVAIDGWPRNSRY : ..: . : . .: . .. :.: :: . : . : : : . : mKIAA1 INGSVTKIFVAEMKDPQQVPIHRLIQGQVQRVRHETLKPEDRSTRLFWVRIVLWRERFYY 350 360 370 380 390 400 280 290 300 310 320 330 mKIAA1 PNGHFVKNLGDVGEKETETEVLLLEHDVP-HQPFSQAVLSFLPRMPWSITEEDMKNREDL : : .. : . : .: ::: . : : .: . : :. : . .::: mKIAA1 PLGIVLEVLPKAITWEQGLYILDLEHGLKAHTPDPASVSKALQRYR-SELNTAAGHREDY 410 420 430 440 450 460 340 350 360 370 380 390 mKIAA1 RHLCVCSVDPPGCTDIDDALHCRELSNGNLEVGVHIADVSHFIRPGNALDQESARRGTTV ::. . .::: : ..:::: :.:. ::.::::::. .. .::: :. ..::. mKIAA1 RHFLTFTVDPQGACNLDDALSVRDLGP-VYEVAVHIADVASLVPKDGALDVEARQQGTVF 470 480 490 500 510 520 400 410 420 430 440 450 mKIAA1 YLCEKR-IDMVPELLSSNLCSLRSNVDRLAFSCIWEMNHNAEILKT-RFTKSVINSKVSV : ... . :.: : .. :: . ::::.: . :.... .:. ::. :.: : mKIAA1 YAPNREPVLMLPASLCQDALSLLPGQDRLAISLFLTMEKGGGQIKSLRFAPSIIRSDRQL 530 540 550 560 570 580 mKIAA1 SYEEAEELIKRHPGAGLELPAHLDSVEACVVAACYFSWMLRRQRLSAACYYEPPDEDSVL 590 600 610 620 630 640 451 residues in 1 query sequences 1768566 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:33:49 2006 done: Mon Mar 27 10:33:50 2006 Scan time: 0.670 Display time: 0.080 Function used was FASTA [version 3.4t11 Apr 17, 2002]