FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0710.ptfa, 1172 aa
 vs ./tmplib.26680 library

1767845 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.3892+/-0.00435; mu= 21.0391+/- 0.291
 mean_var=95.0542+/-21.849, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1315

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1138  ( 1232 res)   mfj23063                  (1232)  159   42 0.00097


>>mKIAA1138  ( 1232 res)   mfj23063                       (1232 aa)
 initn: 170 init1:  76 opt: 159  Z-score: 159.5  bits: 41.5 E(): 0.00097
Smith-Waterman score: 159;  34.375% identity (39.640% ungapped) in 128 aa overlap (997-1117:1102-1219)

        970       980       990      1000      1010      1020      
mKIAA0 TKSTIKPSQMSVARITCVRGQGPNEGIPFIDDYISTQEQVVDYLTQYSGIKPGDL-DAKI
                                     : ... ...:::: :..::.  .:: :..:
mKIAA1 FALDCEMSYTTYGLELTRVTVVDTDMQVVYDTFVKPDNEVVDYNTRFSGVTEADLVDTSI
            1080      1090      1100      1110      1120      1130 

        1030      1040      1050      1060      1070          1080 
mKIAA0 SSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQKDFRVINLMVPKDQVLDTVYLF-H---MP
       .   :  .... :.. :  :  . ..::.:..:.  . : : .  :.::  :: :   .:
mKIAA1 T---LRDVQAVLLSM-FSAD--TILIGHSLESDL--LALKVIHGTVVDTSVLFPHRLGLP
               1140         1150        1160      1170      1180   

            1090      1100        1110      1120      1130         
mKIAA0 RKRMISLRFLAWYFLDLKIQGET--HDSIEDARTALQLYRKYLELSKNGTEPESFHKVLK
        ::  ::: :   .:   :: ..  :.: ::: . ..:                      
mKIAA1 YKR--SLRNLMADYLRQIIQDNVDGHSSSEDASACMHLVIWKIREDAKTKR         
            1190      1200      1210      1220      1230           

    1140      1150      1160      1170  
mKIAA0 GLYEKGRKMDWKVPEPESQTSPKNAAVFSVLAL




1172 residues in 1 query   sequences
1767845 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:26:53 2006 done: Mon Mar 27 10:26:55 2006
 Scan time:  1.100 Display time:  0.050

Function used was FASTA [version 3.4t11 Apr 17, 2002]