FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0468.ptfa, 486 aa vs ./tmplib.26680 library 1768531 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 11.2918+/-0.0081; mu= -16.4498+/- 0.533 mean_var=407.9496+/-100.955, 0's: 0 Z-trim: 4 B-trim: 0 in 0/36 Lambda= 0.0635 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4079 ( 366 res) mpj03390 ( 366) 379 48 1e-06 >>mKIAA4079 ( 366 res) mpj03390 (366 aa) initn: 300 init1: 231 opt: 379 Z-score: 212.8 bits: 48.4 E(): 1e-06 Smith-Waterman score: 379; 36.398% identity (40.773% ungapped) in 261 aa overlap (243-486:117-366) 220 230 240 250 260 270 mKIAA0 ATTTGAPTMATAPATAATTAPSTPEAPPATATVADVRTTGIQGMLPLPLTTAATAKITT- .: :: : : .. . . .:. mKIAA4 EDQDGSGDDSDNFSGSGTGALPDTLSRQTPSTWKDVWLLTATPTAPEPTSSNTETAFTSV 90 100 110 120 130 140 280 290 300 310 mKIAA0 -PAAPSPPTTVATLDTEA-P--TPR-LVNTATSRPR-ALPRPVTTQEPDV------AERS ::. .: .: .:: : : : . .:.::: .. :.: . : : . mKIAA4 LPAGEKPEEGEPVLHVEAEPGFTARDKEKEVTTRPRETVQLPITQRASTVRVTTAQAAVT 150 160 170 180 190 200 320 330 340 350 360 370 mKIAA0 TLPLGTTAPGPTEMAQTPTPESLLTTIQDEPEVPVSGGPSGDFELQEETTQPDTANEVVA . : : :: . .: .: . .. :.: .:: : . .:... :::.. : mKIAA4 SHPHGGMQPG---LHETSAPTAPGQPDHQPPRVE-GGGTS----VIKEVVEDGTANQLPA 210 220 230 240 250 380 390 400 410 420 430 mKIAA0 VEGAAAKPSP--PLGTLPKGARPGPGLHDNA-IDSGSSAAQLPQKSILERKEVLVAVIVG ::.. . : : :::... .: :...:. .:.:.::::: .::.: mKIAA4 GEGSGEQDFTFETSGENTAVAAVEPGLRNQPPVDEGATGAS---QSLLDRKEVLGGVIAG 260 270 280 290 300 310 440 450 460 470 480 mKIAA0 GVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASV-TYQKPDKQEEFYA :.:: .::. ::....:::::::::::.:::::::. .:::: ::::::: mKIAA4 GLVGLIFAVCLVAFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 320 330 340 350 360 486 residues in 1 query sequences 1768531 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:21:32 2006 done: Mon Mar 27 10:21:33 2006 Scan time: 0.690 Display time: 0.020 Function used was FASTA [version 3.4t11 Apr 17, 2002]