# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpm07213.fasta.nr -Q ../query/mKIAA0468.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0468, 486 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7906482 sequences Expectation_n fit: rho(ln(x))= 6.8651+/-0.000207; mu= 4.6727+/- 0.011 mean_var=143.5338+/-27.719, 0's: 32 Z-trim: 83 B-trim: 408 in 2/66 Lambda= 0.107053 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|114152874|sp|Q64519.2|SDC3_MOUSE RecName: Full= ( 442) 2855 452.3 1.2e-124 gi|1399583|gb|AAB03283.1| syndecan-3 ( 442) 2786 441.6 1.9e-121 gi|149024102|gb|EDL80599.1| syndecan 3 [Rattus nor ( 442) 2771 439.3 9.5e-121 gi|2507439|sp|P33671.3|SDC3_RAT RecName: Full=Synd ( 442) 2766 438.6 1.6e-120 gi|1399585|gb|AAB03284.1| syndecan-3 ( 442) 2736 433.9 4e-119 gi|119888633|ref|XP_875616.2| PREDICTED: similar t ( 442) 2365 376.6 7.2e-102 gi|109000859|ref|XP_001092729.1| PREDICTED: simila ( 498) 2349 374.2 4.3e-101 gi|114152873|sp|O75056.2|SDC3_HUMAN RecName: Full= ( 442) 2343 373.2 7.6e-101 gi|13810649|gb|AAK39969.1|AF248634_1 syndecan 3 [H ( 442) 2337 372.3 1.4e-100 gi|194207786|ref|XP_001500236.2| PREDICTED: simila ( 403) 2194 350.2 6e-94 gi|73950489|ref|XP_544449.2| PREDICTED: similar to ( 591) 2191 349.9 1.1e-93 gi|114555293|ref|XP_001149044.1| PREDICTED: simila ( 403) 2146 342.8 1e-91 gi|1334236|emb|CAA44848.1| neuroglycan [Rattus rat ( 353) 2143 342.3 1.3e-91 gi|56206270|emb|CAI22245.1| syndecan 3 [Homo sapie ( 384) 1867 299.7 9.2e-79 gi|119628042|gb|EAX07637.1| syndecan 3 (N-syndecan ( 346) 1809 290.7 4.2e-76 gi|194380786|dbj|BAG58546.1| unnamed protein produ ( 346) 1803 289.7 8e-76 gi|123981994|gb|ABM82826.1| syndecan 3 (N-syndecan ( 370) 1694 272.9 9.9e-71 gi|126330542|ref|XP_001381745.1| PREDICTED: simila ( 455) 1477 239.5 1.4e-60 gi|74211964|dbj|BAE29322.1| unnamed protein produc ( 186) 1197 195.9 7.6e-48 gi|159572670|emb|CAP19380.1| syndecan 3 [Mus muscu ( 148) 918 152.7 6e-35 gi|224081314|ref|XP_002189216.1| PREDICTED: syndec ( 355) 816 137.3 6.3e-30 gi|1351050|sp|P26261.2|SDC3_CHICK RecName: Full=Sy ( 405) 667 114.3 5.9e-23 gi|2547268|gb|AAB81326.1| syndecan-3 [Xenopus laev ( 390) 661 113.4 1.1e-22 gi|57116395|gb|AAW33686.1| syndecan-3 [Meleagris g ( 403) 634 109.2 2e-21 gi|161612024|gb|AAI55982.1| Sdc3 protein [Xenopus ( 362) 490 87.0 9.2e-15 gi|189532662|ref|XP_001919756.1| PREDICTED: hypoth ( 404) 445 80.1 1.2e-12 gi|57324|emb|CAA43058.1| syndecan [Rattus norvegic ( 279) 402 73.3 9.4e-11 gi|464744|sp|P26260.2|SDC1_RAT RecName: Full=Synde ( 313) 402 73.3 1e-10 gi|149600328|ref|XP_001519050.1| PREDICTED: hypoth ( 231) 394 72.0 1.9e-10 gi|118089042|ref|XP_419972.2| PREDICTED: hypotheti ( 308) 393 71.9 2.6e-10 gi|1351048|sp|P47951.1|SDC1_CRIGR RecName: Full=Sy ( 309) 387 71.0 5e-10 gi|74207636|dbj|BAE40064.1| unnamed protein produc ( 311) 383 70.4 7.8e-10 gi|47216146|emb|CAG10020.1| unnamed protein produc ( 289) 381 70.0 9.1e-10 gi|135156|sp|P18828.1|SDC1_MOUSE RecName: Full=Syn ( 311) 379 69.8 1.2e-09 gi|464743|sp|P34740.1|SDC1_MESAU RecName: Full=Syn ( 309) 373 68.8 2.3e-09 gi|122132416|sp|Q08DZ5.1|SDC1_BOVIN RecName: Full= ( 311) 363 67.3 6.6e-09 gi|148665996|gb|EDK98412.1| syndecan 1, isoform CR ( 258) 361 66.9 7.1e-09 gi|5354039|gb|AAD42345.1|AF134897_1 syndecan-1 [Mu ( 267) 361 66.9 7.3e-09 gi|126345131|ref|XP_001364964.1| PREDICTED: simila ( 251) 360 66.7 7.8e-09 gi|149606353|ref|XP_001521801.1| PREDICTED: simila ( 169) 350 65.1 1.7e-08 gi|666052|emb|CAA88235.1| syndecan-1 [Homo sapiens ( 288) 349 65.1 2.8e-08 gi|338634|gb|AAA60605.1| syndecan ( 310) 349 65.1 3e-08 gi|135155|sp|P18827.2|SDC1_HUMAN RecName: Full=Syn ( 310) 349 65.1 3e-08 gi|62702225|gb|AAX93151.1| unknown [Homo sapiens] ( 310) 344 64.4 5e-08 gi|109102131|ref|XP_001095194.1| PREDICTED: syndec ( 310) 344 64.4 5e-08 gi|73980589|ref|XP_540099.2| PREDICTED: similar to ( 446) 340 63.9 1e-07 gi|14250612|gb|AAH08765.1| Syndecan 1 [Homo sapien ( 310) 337 63.3 1.1e-07 gi|30583913|gb|AAP36205.1| Homo sapiens syndecan 1 ( 311) 337 63.3 1.1e-07 gi|149580560|ref|XP_001517354.1| PREDICTED: simila ( 296) 334 62.8 1.4e-07 gi|114576379|ref|XP_001140545.1| PREDICTED: simila ( 241) 325 61.3 3.2e-07 >>gi|114152874|sp|Q64519.2|SDC3_MOUSE RecName: Full=Synd (442 aa) initn: 2855 init1: 2855 opt: 2855 Z-score: 2394.2 bits: 452.3 E(): 1.2e-124 Smith-Waterman score: 2855; 100.000% identity (100.000% similar) in 442 aa overlap (45-486:1-442) 20 30 40 50 60 70 mKIAA0 RASERTSEAEPAAEEPSAGPAQPAPRTKAAMKPGPPRRGTAQGQRVDTATHAPGARGLLL :::::::::::::::::::::::::::::: gi|114 MKPGPPRRGTAQGQRVDTATHAPGARGLLL 10 20 30 80 90 100 110 120 130 mKIAA0 PPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQESG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQESG 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA0 LETAMRFIPDMALAAPTAPAMLPTTVIQPVDTPFEELLSEHPSPEPVTSPPLVTEVTEVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LETAMRFIPDMALAAPTAPAMLPTTVIQPVDTPFEELLSEHPSPEPVTSPPLVTEVTEVV 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA0 EESSQKATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPEAPPATATVADVRTTGIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EESSQKATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPEAPPATATVADVRTTGIQ 160 170 180 190 200 210 260 270 280 290 300 310 mKIAA0 GMLPLPLTTAATAKITTPAAPSPPTTVATLDTEAPTPRLVNTATSRPRALPRPVTTQEPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GMLPLPLTTAATAKITTPAAPSPPTTVATLDTEAPTPRLVNTATSRPRALPRPVTTQEPD 220 230 240 250 260 270 320 330 340 350 360 370 mKIAA0 VAERSTLPLGTTAPGPTEMAQTPTPESLLTTIQDEPEVPVSGGPSGDFELQEETTQPDTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VAERSTLPLGTTAPGPTEMAQTPTPESLLTTIQDEPEVPVSGGPSGDFELQEETTQPDTA 280 290 300 310 320 330 380 390 400 410 420 430 mKIAA0 NEVVAVEGAAAKPSPPLGTLPKGARPGPGLHDNAIDSGSSAAQLPQKSILERKEVLVAVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NEVVAVEGAAAKPSPPLGTLPKGARPGPGLHDNAIDSGSSAAQLPQKSILERKEVLVAVI 340 350 360 370 380 390 440 450 460 470 480 mKIAA0 VGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 400 410 420 430 440 >>gi|1399583|gb|AAB03283.1| syndecan-3 (442 aa) initn: 2786 init1: 2786 opt: 2786 Z-score: 2336.6 bits: 441.6 E(): 1.9e-121 Smith-Waterman score: 2786; 97.738% identity (98.869% similar) in 442 aa overlap (45-486:1-442) 20 30 40 50 60 70 mKIAA0 RASERTSEAEPAAEEPSAGPAQPAPRTKAAMKPGPPRRGTAQGQRVDTATHAPGARGLLL :::::::::::::::::::::::::::::: gi|139 MKPGPPRRGTAQGQRVDTATHAPGARGLLL 10 20 30 80 90 100 110 120 130 mKIAA0 PPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQESG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|139 PPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQESG 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA0 LETAMRFIPDMALAAPTAPAMLPTTVIQPVDTPFEELLSEHPSPEPVTSPPLVTEVTEVV :::::::::::::::::::::::::::::::::::::::::: ::::::::::::: ::: gi|139 LETAMRFIPDMALAAPTAPAMLPTTVIQPVDTPFEELLSEHPRPEPVTSPPLVTEVKEVV 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA0 EESSQKATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPEAPPATATVADVRTTGIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|139 EESSQKATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPEAPPATATVADVRTTGIQ 160 170 180 190 200 210 260 270 280 290 300 310 mKIAA0 GMLPLPLTTAATAKITTPAAPSPPTTVATLDTEAPTPRLVNTATSRPRALPRPVTTQEPD :::::::::::::::::::::::::::::::::::::::::::::::..::::.:::::. gi|139 GMLPLPLTTAATAKITTPAAPSPPTTVATLDTEAPTPRLVNTATSRPQSLPRPITTQEPE 220 230 240 250 260 270 320 330 340 350 360 370 mKIAA0 VAERSTLPLGTTAPGPTEMAQTPTPESLLTTIQDEPEVPVSGGPSGDFELQEETTQPDTA ::::::::::::::::::.:::::::::::: :::::::::::::::::::::::::::: gi|139 VAERSTLPLGTTAPGPTEVAQTPTPESLLTTTQDEPEVPVSGGPSGDFELQEETTQPDTA 280 290 300 310 320 330 380 390 400 410 420 430 mKIAA0 NEVVAVEGAAAKPSPPLGTLPKGARPGPGLHDNAIDSGSSAAQLPQKSILERKEVLVAVI ::::::::::::::::::::::::::: :::::::::::::::: ::::::::::::::: gi|139 NEVVAVEGAAAKPSPPLGTLPKGARPGLGLHDNAIDSGSSAAQLLQKSILERKEVLVAVI 340 350 360 370 380 390 440 450 460 470 480 mKIAA0 VGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|139 VGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 400 410 420 430 440 >>gi|149024102|gb|EDL80599.1| syndecan 3 [Rattus norvegi (442 aa) initn: 2771 init1: 2771 opt: 2771 Z-score: 2324.1 bits: 439.3 E(): 9.5e-121 Smith-Waterman score: 2771; 96.606% identity (98.869% similar) in 442 aa overlap (45-486:1-442) 20 30 40 50 60 70 mKIAA0 RASERTSEAEPAAEEPSAGPAQPAPRTKAAMKPGPPRRGTAQGQRVDTATHAPGARGLLL :::::::::::::::::::::.:::::::: gi|149 MKPGPPRRGTAQGQRVDTATHGPGARGLLL 10 20 30 80 90 100 110 120 130 mKIAA0 PPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQESG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQESG 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA0 LETAMRFIPDMALAAPTAPAMLPTTVIQPVDTPFEELLSEHPSPEPVTSPPLVTEVTEVV ::::::::::.:::::::::::::::::::::::::::::::.::::::::::::::::: gi|149 LETAMRFIPDIALAAPTAPAMLPTTVIQPVDTPFEELLSEHPGPEPVTSPPLVTEVTEVV 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA0 EESSQKATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPEAPPATATVADVRTTGIQ :: ::.:::::::::::::::::::::::::::::::::::: :::::::.::.:::::: gi|149 EEPSQRATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPAAPPATATTADIRTTGIQ 160 170 180 190 200 210 260 270 280 290 300 310 mKIAA0 GMLPLPLTTAATAKITTPAAPSPPTTVATLDTEAPTPRLVNTATSRPRALPRPVTTQEPD :.:::::::::::: ::::.:::::::::::::::::::::::::::::::::::::::. gi|149 GLLPLPLTTAATAKATTPAVPSPPTTVATLDTEAPTPRLVNTATSRPRALPRPVTTQEPE 220 230 240 250 260 270 320 330 340 350 360 370 mKIAA0 VAERSTLPLGTTAPGPTEMAQTPTPESLLTTIQDEPEVPVSGGPSGDFELQEETTQPDTA ::::::::::::::::::.:::::::::::: :::::::::::::::::::::::::::: gi|149 VAERSTLPLGTTAPGPTEVAQTPTPESLLTTTQDEPEVPVSGGPSGDFELQEETTQPDTA 280 290 300 310 320 330 380 390 400 410 420 430 mKIAA0 NEVVAVEGAAAKPSPPLGTLPKGARPGPGLHDNAIDSGSSAAQLPQKSILERKEVLVAVI ::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: gi|149 NEVVAVEGAAAKPSPPLGTLPKGARPGLGLHDNAIDSGSSAAQLPQKSILERKEVLVAVI 340 350 360 370 380 390 440 450 460 470 480 mKIAA0 VGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 400 410 420 430 440 >>gi|2507439|sp|P33671.3|SDC3_RAT RecName: Full=Syndecan (442 aa) initn: 2766 init1: 2766 opt: 2766 Z-score: 2319.9 bits: 438.6 E(): 1.6e-120 Smith-Waterman score: 2766; 96.380% identity (98.869% similar) in 442 aa overlap (45-486:1-442) 20 30 40 50 60 70 mKIAA0 RASERTSEAEPAAEEPSAGPAQPAPRTKAAMKPGPPRRGTAQGQRVDTATHAPGARGLLL :::::::::::::::::::::.:::::::: gi|250 MKPGPPRRGTAQGQRVDTATHGPGARGLLL 10 20 30 80 90 100 110 120 130 mKIAA0 PPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQESG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 PPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQESG 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA0 LETAMRFIPDMALAAPTAPAMLPTTVIQPVDTPFEELLSEHPSPEPVTSPPLVTEVTEVV ::::::::::.:::::::::::::::::::::::::::::::.::::::::::::::::: gi|250 LETAMRFIPDIALAAPTAPAMLPTTVIQPVDTPFEELLSEHPGPEPVTSPPLVTEVTEVV 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA0 EESSQKATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPEAPPATATVADVRTTGIQ :: ::.:::::::::::::::::::::::::::::::::::: :::::::.::.:::::: gi|250 EEPSQRATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPAAPPATATTADIRTTGIQ 160 170 180 190 200 210 260 270 280 290 300 310 mKIAA0 GMLPLPLTTAATAKITTPAAPSPPTTVATLDTEAPTPRLVNTATSRPRALPRPVTTQEPD :.:::::::::::: ::::.:::::::.:::::::::::::::::::::::::::::::. gi|250 GLLPLPLTTAATAKATTPAVPSPPTTVTTLDTEAPTPRLVNTATSRPRALPRPVTTQEPE 220 230 240 250 260 270 320 330 340 350 360 370 mKIAA0 VAERSTLPLGTTAPGPTEMAQTPTPESLLTTIQDEPEVPVSGGPSGDFELQEETTQPDTA ::::::::::::::::::.:::::::::::: :::::::::::::::::::::::::::: gi|250 VAERSTLPLGTTAPGPTEVAQTPTPESLLTTTQDEPEVPVSGGPSGDFELQEETTQPDTA 280 290 300 310 320 330 380 390 400 410 420 430 mKIAA0 NEVVAVEGAAAKPSPPLGTLPKGARPGPGLHDNAIDSGSSAAQLPQKSILERKEVLVAVI ::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: gi|250 NEVVAVEGAAAKPSPPLGTLPKGARPGLGLHDNAIDSGSSAAQLPQKSILERKEVLVAVI 340 350 360 370 380 390 440 450 460 470 480 mKIAA0 VGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 VGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 400 410 420 430 440 >>gi|1399585|gb|AAB03284.1| syndecan-3 (442 aa) initn: 2736 init1: 2736 opt: 2736 Z-score: 2294.9 bits: 433.9 E(): 4e-119 Smith-Waterman score: 2736; 95.249% identity (98.416% similar) in 442 aa overlap (45-486:1-442) 20 30 40 50 60 70 mKIAA0 RASERTSEAEPAAEEPSAGPAQPAPRTKAAMKPGPPRRGTAQGQRVDTATHAPGARGLLL :::::::::::::.:::::::.:::::::: gi|139 MKPGPPRRGTAQGERVDTATHGPGARGLLL 10 20 30 80 90 100 110 120 130 mKIAA0 PPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQESG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|139 PPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEEESG 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA0 LETAMRFIPDMALAAPTAPAMLPTTVIQPVDTPFEELLSEHPSPEPVTSPPLVTEVTEVV ::::::::::.:::::::::::::::::::::::::::::::.::::::::::::::::: gi|139 LETAMRFIPDIALAAPTAPAMLPTTVIQPVDTPFEELLSEHPGPEPVTSPPLVTEVTEVV 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA0 EESSQKATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPEAPPATATVADVRTTGIQ :: ::.:::::::::::::::::::.: :::::.:::::::: :::::::.::.:::::: gi|139 EEPSQRATTISTTTSTTAATTTGAPSMDTAPATGATTAPSTPAAPPATATTADIRTTGIQ 160 170 180 190 200 210 260 270 280 290 300 310 mKIAA0 GMLPLPLTTAATAKITTPAAPSPPTTVATLDTEAPTPRLVNTATSRPRALPRPVTTQEPD :.:::::::::::: ::::.:::::::.::::::::::::::::::::::::::::::: gi|139 GLLPLPLTTAATAKATTPAVPSPPTTVSTLDTEAPTPRLVNTATSRPRALPRPVTTQEPV 220 230 240 250 260 270 320 330 340 350 360 370 mKIAA0 VAERSTLPLGTTAPGPTEMAQTPTPESLLTTIQDEPEVPVSGGPSGDFELQEETTQPDTA ::::::::::::::::::.:::::::::::: :::::::::::::::::::::::::::: gi|139 VAERSTLPLGTTAPGPTEVAQTPTPESLLTTTQDEPEVPVSGGPSGDFELQEETTQPDTA 280 290 300 310 320 330 380 390 400 410 420 430 mKIAA0 NEVVAVEGAAAKPSPPLGTLPKGARPGPGLHDNAIDSGSSAAQLPQKSILERKEVLVAVI ::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: gi|139 NEVVAVEGAAAKPSPPLGTLPKGARPGLGLHDNAIDSGSSAAQLPQKSILERKEVLVAVI 340 350 360 370 380 390 440 450 460 470 480 mKIAA0 VGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|139 VGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 400 410 420 430 440 >>gi|119888633|ref|XP_875616.2| PREDICTED: similar to Sy (442 aa) initn: 1565 init1: 923 opt: 2365 Z-score: 1985.2 bits: 376.6 E(): 7.2e-102 Smith-Waterman score: 2365; 82.921% identity (93.034% similar) in 445 aa overlap (45-486:1-442) 20 30 40 50 60 70 mKIAA0 RASERTSEAEPAAEEPSAGPAQPAPRTKAAMKPGPPRR-GTAQGQRVDTATHA-PGARGL ::::::.: :.:.: . ... : :::::: gi|119 MKPGPPHRAGAAHGAGAGAGAAAGPGARGL 10 20 30 80 90 100 110 120 130 mKIAA0 LLPPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|119 LLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA0 SGLETAMRFIPDMALAAPTAPAMLPTTVIQPVDTPFEELLSEHPSPEPVTSPPLVTEVTE ::.:::::: ::.::: :.::.::: :::: :::::: ::.:.:::.::::::::: : gi|119 SGIETAMRFSPDVALAMSTTPAVLPTMDIQPVGTPFEELPSERPTPEPATSPPLVTEVPE 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA0 VVEESSQKATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPEAPPATATVADVRTTG : ::.:::.:: :.::.::::: ::.::.:::.::..:: : :::..::.. ::::: gi|119 ---EPSQRATTVSTPTATTTATTTGPPTVATVPATVATAVPSIPAAPPSAATTSVVRTTG 160 170 180 190 200 260 270 280 290 300 310 mKIAA0 IQGMLPLPLTTAATAKITTPAAPSPPTTVATLDTEAPTPRLVNTATSRPRALPRPVTTQE .. .:::::::::::. ::::.::::::::.:::::::::::.::::::::::::.:::. gi|119 VRRLLPLPLTTAATARATTPAVPSPPTTVAVLDTEAPTPRLVSTATSRPRALPRPATTQK 210 220 230 240 250 260 320 330 340 350 360 370 mKIAA0 PDVAERSTLPLGTTAPGPTEMAQTPTPESLLTTIQDEPEVPVSGGPSGDFEL-QEETTQP ::. :.::::::::::::::.::::::::.::::.::::.:::::::::::: .:::::: gi|119 PDIPEKSTLPLGTTAPGPTEVAQTPTPESFLTTIRDEPEMPVSGGPSGDFELSEEETTQP 270 280 290 300 310 320 380 390 400 410 420 430 mKIAA0 DTANEVVAVEGAAAKPSPPLGTLPKGARPGPGLHDNAIDSGSSAAQLPQKSILERKEVLV ::::::::: :: :::::: :::::::.::::: :::::::::::::::::::::::::: gi|119 DTANEVVAVGGAEAKPSPPPGTLPKGAHPGPGLLDNAIDSGSSAAQLPQKSILERKEVLV 330 340 350 360 370 380 440 450 460 470 480 mKIAA0 AVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 390 400 410 420 430 440 >>gi|109000859|ref|XP_001092729.1| PREDICTED: similar to (498 aa) initn: 949 init1: 826 opt: 2349 Z-score: 1971.2 bits: 374.2 E(): 4.3e-101 Smith-Waterman score: 2349; 80.252% identity (89.496% similar) in 476 aa overlap (17-486:27-498) 10 20 30 40 mKIAA0 ATLPAGAAAVGAEPRASERTSEAEPAAEEPSA---GPAQPAPRTKAAMKP : ..:..::. ::. : : .:: : . gi|109 MRPSAWRLQGARPGPWQPKRDPSLLPSTAAAEVRPAGSAPSSPRLGEAGRSPRCPDAHSA 10 20 30 40 50 60 50 60 70 80 90 100 mKIAA0 G-PPRRGTAQGQRVDTATHA-PGARGLLLPPLLLLLLAGRAAGAQRWRNENFERPVDLEG . :.:.: . :.. : :::::::::::::::::::::::::::.::::::::::: gi|109 AWYSFWGAAHGAGAGTGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVDLEG 70 80 90 100 110 120 110 120 130 140 150 160 mKIAA0 SGDDDSFPDDELDDLYSGSGSGYFEQESGLETAMRFIPDMALAAPTAPAMLPTTVIQPVD :::::::::::::::::::::::::::::.:::::: ::.:::. :.::.:::: :::: gi|109 SGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQPVG 130 140 150 160 170 180 170 180 190 200 210 220 mKIAA0 TPFEELLSEHPSPEPVTSPPLVTEVTEVVEESSQKATTISTTTSTTAATTTGAPTMATAP :::::: ::.:.:::.::: :: :::: :: ::.::::::::.:::::::::::.::.: gi|109 TPFEELPSERPTPEPATSP-LV--VTEVPEEPSQRATTISTTTATTAATTTGAPTVATVP 190 200 210 220 230 230 240 250 260 270 280 mKIAA0 ATAATTAPSTPEAPPATATVADVRTTGIQGMLPLPLTTAATAKITTPAAPSPPTTVATLD ::. : :::: ::: :::.: :::::.. .:::::::.:::. ::: :::::::.:.:: gi|109 ATV-TRRPSTPAAPPFTATTAVVRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD 240 250 260 270 280 290 290 300 310 320 330 340 mKIAA0 TEAPTPRLVNTATSRPRALPRPVTTQEPDVAERSTLPLGTTAPGPTEMAQTPTPESLLTT :::::::::.::::::::::::.::::::. ::::::::::::::::.:::::::..::: gi|109 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT 300 310 320 330 340 350 350 360 370 380 390 400 mKIAA0 IQDEPEVPVSGGPSGDFEL-QEETTQPDTANEVVAVEGAAAKPSPPLGTLPKGARPGPGL :.::::::::::::::::: .::::::::::::::: ::::::: : ::::::::::::: gi|109 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKPSSPPGTLPKGARPGPGL 360 370 380 390 400 410 410 420 430 440 450 460 mKIAA0 HDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT 420 430 440 450 460 470 470 480 mKIAA0 LEEPKQASVTYQKPDKQEEFYA :::::::::::::::::::::: gi|109 LEEPKQASVTYQKPDKQEEFYA 480 490 >>gi|114152873|sp|O75056.2|SDC3_HUMAN RecName: Full=Synd (442 aa) initn: 1565 init1: 932 opt: 2343 Z-score: 1966.9 bits: 373.2 E(): 7.6e-101 Smith-Waterman score: 2343; 83.371% identity (92.809% similar) in 445 aa overlap (45-486:1-442) 20 30 40 50 60 70 mKIAA0 RASERTSEAEPAAEEPSAGPAQPAPRTKAAMKPGPPRR-GTAQGQRVDTATHA-PGARGL ::::::.: :.:.: . ... : :::::: gi|114 MKPGPPHRAGAAHGAGAGAGAAAGPGARGL 10 20 30 80 90 100 110 120 130 mKIAA0 LLPPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|114 LLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA0 SGLETAMRFIPDMALAAPTAPAMLPTTVIQPVDTPFEELLSEHPSPEPVTSPPLVTEVTE ::.:::::: ::.:::. :.::.:::: :::: :::::: ::.:. ::.::: :: ::: gi|114 SGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSP-LV--VTE 100 110 120 130 140 200 210 220 230 240 250 mKIAA0 VVEESSQKATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPEAPPATATVADVRTTG : :: ::.:::.::: .:::::.:: ::.::.:::.::..:::: ::: :::.: .:::: gi|114 VPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTG 150 160 170 180 190 200 260 270 280 290 300 310 mKIAA0 IQGMLPLPLTTAATAKITTPAAPSPPTTVATLDTEAPTPRLVNTATSRPRALPRPVTTQE .. .:::::::.:::. ::: :::::::.:.:::::::::::.::::::::::::.:::: gi|114 VRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQE 210 220 230 240 250 260 320 330 340 350 360 370 mKIAA0 PDVAERSTLPLGTTAPGPTEMAQTPTPESLLTTIQDEPEVPVSGGPSGDFEL-QEETTQP ::. ::::::::::::::::.:::::::..::::.::::::::::::::::: .:::::: gi|114 PDIPERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGDFELPEEETTQP 270 280 290 300 310 320 380 390 400 410 420 430 mKIAA0 DTANEVVAVEGAAAKPSPPLGTLPKGARPGPGLHDNAIDSGSSAAQLPQKSILERKEVLV ::::::::: ::::: : : ::::::::::::: :::::::::::::::::::::::::: gi|114 DTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLV 330 340 350 360 370 380 440 450 460 470 480 mKIAA0 AVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 390 400 410 420 430 440 >>gi|13810649|gb|AAK39969.1|AF248634_1 syndecan 3 [Homo (442 aa) initn: 1565 init1: 926 opt: 2337 Z-score: 1961.9 bits: 372.3 E(): 1.4e-100 Smith-Waterman score: 2337; 83.146% identity (92.809% similar) in 445 aa overlap (45-486:1-442) 20 30 40 50 60 70 mKIAA0 RASERTSEAEPAAEEPSAGPAQPAPRTKAAMKPGPPRR-GTAQGQRVDTATHA-PGARGL ::::::.: :.:.: . ... : :::::: gi|138 MKPGPPHRAGAAHGAGAGAGAAAGPGARGL 10 20 30 80 90 100 110 120 130 mKIAA0 LLPPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|138 LLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA0 SGLETAMRFIPDMALAAPTAPAMLPTTVIQPVDTPFEELLSEHPSPEPVTSPPLVTEVTE ::.:::::: ::.:::. :.::.:::: :::: :::::: ::.:. ::.::: :: ::: gi|138 SGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSP-LV--VTE 100 110 120 130 140 200 210 220 230 240 250 mKIAA0 VVEESSQKATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPEAPPATATVADVRTTG : :: ::.:::.::: .:::::.:: ::.::.:::.::..:::: ::: :::.: .:::: gi|138 VPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTG 150 160 170 180 190 200 260 270 280 290 300 310 mKIAA0 IQGMLPLPLTTAATAKITTPAAPSPPTTVATLDTEAPTPRLVNTATSRPRALPRPVTTQE .. .:::::::.:::. ::: :::::::.:.:::::::::::.::::::::::::.:::: gi|138 VRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQE 210 220 230 240 250 260 320 330 340 350 360 370 mKIAA0 PDVAERSTLPLGTTAPGPTEMAQTPTPESLLTTIQDEPEVPVSGGPSGDFEL-QEETTQP ::. ::::::::::::::::.:::::::..::::..:::::::::::::::: .:::::: gi|138 PDIPERSTLPLGTTAPGPTEVAQTPTPETFLTTIRNEPEVPVSGGPSGDFELPEEETTQP 270 280 290 300 310 320 380 390 400 410 420 430 mKIAA0 DTANEVVAVEGAAAKPSPPLGTLPKGARPGPGLHDNAIDSGSSAAQLPQKSILERKEVLV ::::::::: ::::: : : ::::::::::::: :::::::::::::::::::::::::: gi|138 DTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLV 330 340 350 360 370 380 440 450 460 470 480 mKIAA0 AVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|138 AVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 390 400 410 420 430 440 >>gi|194207786|ref|XP_001500236.2| PREDICTED: similar to (403 aa) initn: 1387 init1: 947 opt: 2194 Z-score: 1843.0 bits: 350.2 E(): 6e-94 Smith-Waterman score: 2194; 86.216% identity (93.233% similar) in 399 aa overlap (89-486:8-403) 60 70 80 90 100 110 mKIAA0 RVDTATHAPGARGLLLPPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELD :::::.:::::::::::::::: ::::::: gi|194 MEEMVVMAQRWRSENFERPVDLEGSGDDDPFPDDELD 10 20 30 120 130 140 150 160 170 mKIAA0 DLYSGSGSGYFEQESGLETAMRFIPDMALAAPTAPAMLPTTVIQPVDTPFEELLSEHPSP ::::::::::::::::.:::::: :: :::. :.::.::: :::: :::::: ::.:.: gi|194 DLYSGSGSGYFEQESGIETAMRFSPDAALAVSTTPAVLPTMDIQPVGTPFEELTSERPTP 40 50 60 70 80 90 180 190 200 210 220 230 mKIAA0 EPVTSPPLVTEVTEVVEESSQKATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPEA ::.::::.:::: : : ::.:::::: :.::::::::::: ::.:::.::.::: : : gi|194 EPATSPPVVTEVPE---EPSQRATTISTPTATTAATTTGAPTAATVPATVATAAPSIPAA 100 110 120 130 140 150 240 250 260 270 280 290 mKIAA0 PPATATVADVRTTGIQGMLPLPLTTAATAKITTPAAPSPPTTVATLDTEAPTPRLVNTAT ::.:::.. ::::::. .:::::::::::. ::::.::::::::.:::::::::::.::: gi|194 PPSTATTSVVRTTGIRRLLPLPLTTAATARATTPAVPSPPTTVAVLDTEAPTPRLVSTAT 160 170 180 190 200 210 300 310 320 330 340 350 mKIAA0 SRPRALPRPVTTQEPDVAERSTLPLGTTAPGPTEMAQTPTPESLLTTIQDEPEVPVSGGP ::::::::: ::::::. ::::::::::::::::.::::::::.::::.:: :::::::: gi|194 SRPRALPRPSTTQEPDIPERSTLPLGTTAPGPTEVAQTPTPESFLTTIRDEREVPVSGGP 220 230 240 250 260 270 360 370 380 390 400 410 mKIAA0 SGDFEL-QEETTQPDTANEVVAVEGAAAKPSPPLGTLPKGARPGPGLHDNAIDSGSSAAQ :::::: .::::::::::::::: ::::::::: ::::::::::::: :::::::::::: gi|194 SGDFELPEEETTQPDTANEVVAVGGAAAKPSPPPGTLPKGARPGPGLLDNAIDSGSSAAQ 280 290 300 310 320 330 420 430 440 450 460 470 mKIAA0 LPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQK 340 350 360 370 380 390 480 mKIAA0 PDKQEEFYA ::::::::: gi|194 PDKQEEFYA 400 486 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sat Mar 14 20:58:13 2009 done: Sat Mar 14 21:05:15 2009 Total Scan time: 947.240 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]