FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0733.ptfa, 685 aa vs ./tmplib.26680 library 1768332 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.8805+/-0.00777; mu= -6.8587+/- 0.516 mean_var=374.4393+/-89.116, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.0663 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4135 ( 723 res) mpf00123 ( 723) 612 73 1.4e-13 >>mKIAA4135 ( 723 res) mpf00123 (723 aa) initn: 1161 init1: 406 opt: 612 Z-score: 336.2 bits: 72.7 E(): 1.4e-13 Smith-Waterman score: 1360; 38.442% identity (49.507% ungapped) in 783 aa overlap (1-684:16-722) 10 20 30 40 mKIAA0 DFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQESTRY :.::::::::.:::.:: :::.:::::::::.::: .:::::..: mKIAA4 LTNIDSGMAQNSPQLDIQVLHDLRQRFPEIPEGVVSQCMLQNNNNLEACCRALSQESSKY 10 20 30 40 50 60 50 60 70 80 90 100 mKIAA0 LYGEGDLNFSDESGISGLRNHMTSLNLDLQSQNVYHHGREGSRVNGSRTLTHSVSDGQLH :: : . ... .. ::.. .:: ..: . :: : .:...::.:::.:: :::.. mKIAA4 LYME--YHSPEDNRMN--RNRLLHINLGIHSPSSYHPG-DGAHLNGGRTLVHSSSDGHID 70 80 90 100 110 110 120 130 140 150 mKIAA0 GGQSNNELFQ---QEPQTAPAQVP--QGFNVFGM----------PSTSGASNSTPHLGFH .. .. . :::..::: : ..: : : :: . :. . :.. mKIAA4 PQHTAGKQLICLVQEPHSAPAVVAATPNYNPFFMNEQNRSAATPPSQPPQQPSSMQTGMN 120 130 140 150 160 170 160 170 180 190 200 mKIAA0 LGS-KGTSNLS-----QQTPRF--NPIMVTLAPNIQTGRSTPTSLHI-HGVPPPVLNSPQ .. .: : .. ::. ::: ::.. :. .:...: .:.: .: . .:: mKIAA4 PSAMQGPSPPPPPPSYMHIPRYSTNPITVTVSQNLPSGQTVPRALQILPQIPSNLYGSP- 180 190 200 210 220 230 210 220 230 240 mKIAA0 GNSIYIRPYITTPSGTARQTQQHSGW-------VSQFN----PMNP-QQAYQPSQ--PG- .::.:: :. :...::: :.. : : ... :. : :: ::::: : mKIAA4 -GSIFIRQ--TSQSSSGRQTPQNAPWQSSPQGPVPHYSQRPLPVYPHQQNYQPSQYSPKQ 240 250 260 270 280 290 250 260 270 280 290 mKIAA0 ---PWTTY----PASNPLPHTSTQ---QPNQQGHQTSHVYMPISSPTTPQ------PPTI : ..: :.. : : .: : :: : :: .:::.:: : ::: ::. mKIAA4 QQIPQSVYHSPPPSQCPSPFSSPQHQVQPPQLGHPSSHVFMPPSPSTTPPHLYQQGPPSY 300 310 320 330 340 350 300 310 320 330 340 350 mKIAA0 HSSGSSQSSAHSQYNIQNISTGPRKNQIEIKLEPPQRNSSSKLRSSGPRTASTSSLVNSQ .. :: .: :. :. ... : : .::: .:: :: ... :: .: ...: mKIAA4 QKPGS-HSVAYLPYTASSLPKGSMK-KIEITVEPSQRPGTAITRSPSP--------ISNQ 360 370 380 390 400 360 370 380 390 400 mKIAA0 TLNRNQPTVYIAASPPNTDEMISR---SQPKVYISANATAGDEQGMRNQPTLFISTNSGP ::: ..: :..::... :: :::: .:.: . .::: :: mKIAA4 PSPRNQHSLYTATTPPSSSP--SRGISSQPKPPFSVNPV----YITYTQPT-------GP 410 420 430 440 410 420 430 440 450 460 mKIAA0 SAASRNMSGQVSMGPAFIHHHPPKSRVLGGNSATSPRVVVTQPNTKYTFKITVSPNKPPA : : :. : ::::. :: .:::::. mKIAA4 SCA-----------PS-----P------------SPRVI---PNPTTVFKITVGR----- 450 460 470 470 480 490 500 510 520 mKIAA0 VSPGVVSPTFELTNLLNHPDHYVETENIQHLTDPALAHVDRISEA--RKLSMGSDDAAYT . : .: ::... .. . : :: .. . .. .. :. : :::: ::: mKIAA4 ------ATTENLLNLVDQEERSAAPEPIQPISVIPGSGGEKGNHKYQRSSSSGSDDYAYT 480 490 500 510 520 530 540 550 560 570 580 mKIAA0 QALLVHQKARMERLQRELEMQKKKLDKLKSEVNEMENNLTRRRLKRSNSISQIPSLEEMQ ::::.::.:::::: ..:...:..:..::.::: ::..: .:::.: . . ::. ::: mKIAA4 QALLLHQRARMERLAKQLKLEKEELERLKAEVNSMEHDLMQRRLRRVSCTTAIPTPEEMT 530 540 550 560 570 580 590 600 610 620 630 640 mKIAA0 QLRSCNRQLQIDIDCLTKEIDLFQARGPHFNPSAIHNFYDNIGFVGPV-PPKPKDQRS-- .::: ::::::..:: ::.::.:.:: .:.:.::.::::.: ::: ::::. . : mKIAA4 RLRSTNRQLQINVDCTLKEVDLLQSRG-NFDPKAINNFYDHIE-PGPVVPPKPSKKDSSD 590 600 610 620 630 640 650 660 mKIAA0 -------------TIKAP-KTQDA----------------------EDEEGAQWNCTACT : ::: .:: :: ::: ::: .:: mKIAA4 SCAIERKARRISVTSKAPVDIHDAQAAAADEHLSICKQSARTQPRDEDYEGAPWNCDSCT 650 660 670 680 690 700 670 680 mKIAA0 FLNHPALIRCEQCEMPRHF ::::::: :::::::::. mKIAA4 FLNHPALNRCEQCEMPRYT 710 720 685 residues in 1 query sequences 1768332 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:27:27 2006 done: Mon Mar 27 10:27:28 2006 Scan time: 0.840 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]