FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0159.ptfa, 1397 aa
 vs ./tmplib.26680 library

1767620 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.4995+/-0.00429; mu= 15.4231+/- 0.286
 mean_var=107.6746+/-24.716, 0's: 0 Z-trim: 2  B-trim: 2 in 1/35
 Lambda= 0.1236

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0056  ( 1505 res)   mfj00763                  (1505)  195   47   4e-05


>>mKIAA0056  ( 1505 res)   mfj00763                       (1505 aa)
 initn: 207 init1: 170 opt: 195  Z-score: 184.3  bits: 46.7 E(): 4e-05
Smith-Waterman score: 201;  23.276% identity (24.658% ungapped) in 232 aa overlap (1030-1248:915-1146)

    1000      1010      1020      1030      1040      1050         
mKIAA0 LDGNQVLAAFVPLLLKVCNNPGLYSNPELCAAASLALGKFCMISAPFCDSQLRLLFTMLE
                                     : : ..:::.:.    .  ...  :   ::
mKIAA0 HLPSSQGTTDALDSQPPFQPRSSAMPSVIRAHAIITLGKLCLQHEDLAKKSIPALVRELE
          890       900       910       920       930       940    

    1060      1070      1080      1090      1100      1110         
mKIAA0 KSSLPTVRSNLMVATGDLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDM
        :   .::.:....  :: ::.  .:: . :.. . :.:    .:: . ...:.:. ...
mKIAA0 VSEDVAVRNNVIIVICDLCIRYTVMVDNYIPNISVCLKDSDPFIRKQTLVLLTNLLQEEY
          950       960       970       980       990      1000    

    1120       1130      1140      1150        1160      1170      
mKIAA0 VKVKGQVS-EMAVLLIDPVPQIAALAKNFFNELSHKGN--AIYNLLPDIISRLSDPEGGV
       :: ::..  ...  :.:  :.::.:..  . .:  : :   ... . . : .... :   
mKIAA0 VKWKGSLFFRFVSTLVDSHPDIASLGEFCLAHLLLKRNPTMFFQHFIECIFHFNSYEKHG
         1010      1020      1030      1040      1050      1060    

       1180      1190      1200              1210      1220        
mKIAA0 EEEPFHTIMKQLLSYITKDKQTES--------LVEKLCQRFRTARTERQYRDLAYCMSQ-
       . . :    .    .. : : ..         :.:.. .. :   : .   ..  :... 
mKIAA0 QYNKFSQSERGKQLFLLKGKTNKEKRMRIYKFLLEHFTDEQRFNVTSKICLNILACFTDG
         1070      1080      1090      1100      1110      1120    

       1230      1240      1250      1260      1270      1280      
mKIAA0 -LPLTERGLQKMLDNFECFGDKLLDESVFSAFLSIVGKLRRGAKPEGKAIIDEFEQKLRA
        ::.  .. . . :.:. ...:                                      
mKIAA0 ILPMDMEASELLSDTFDILNSKEIKLLAMRAQTSKDLLEEDDVALANVVMQEAQMKIISQ
         1130      1140      1150      1160      1170      1180    




1397 residues in 1 query   sequences
1767620 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:13:26 2006 done: Mon Mar 27 10:13:27 2006
 Scan time:  1.190 Display time:  0.070

Function used was FASTA [version 3.4t11 Apr 17, 2002]