FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1382.ptfa, 571 aa
 vs ./tmplib.26680 library

1768446 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.2757+/-0.00466; mu= 18.0147+/- 0.313
 mean_var=94.7941+/-21.189, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1317

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00021  ( 460 res)   mfj35214                   ( 460)  152   39 0.00083


>>mFLJ00021  ( 460 res)   mfj35214                        (460 aa)
 initn:  78 init1:  78 opt: 152  Z-score: 160.7  bits: 39.3 E(): 0.00083
Smith-Waterman score: 156;  18.892% identity (20.661% ungapped) in 397 aa overlap (149-529:34-412)

      120       130       140       150       160       170        
mKIAA1 LLESNLGKKKYETDFHPGTTSFGMSVFNLSNAIVGSGILGLSYAMANTGIALFIILLTFV
                                     : :::.: : .  :.:..:  . ..:: ::
mFLJ00 PALPHSLEMAGEITETGELYSPYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLIFV
            10        20        30        40        50        60   

      180       190        200        210       220       230      
mKIAA1 SIFSLYSVHLLLKT-ANEGGSLLYEQL-GHKAYGLAGKLAASGSITMQNIGAMSSYLFIV
       ...:. .. . ... :  ...: ....  ::      . .:: :    .. ....:    
mFLJ00 GFMSFVTTTFAMEAMAAANAQLRWKRMETHKEEDDEDSSTASDS----DLLSQDNYERAE
            70        80        90       100           110         

        240           250       260       270       280       290  
mKIAA1 KYELPLVIK----ALMNIEDTNGLWYLNGDYLVLLVSLVLILPLSLLRNLGYLGYTSGLS
       :  .  : .     :..: :   .    :..  .. . : .  :  .  . ::    .. 
mFLJ00 KRPILSVQRRSSANLFEITDRVEM----GQMASMFFNKVGV-NLFYFCIITYLYGDLAIY
     120       130       140           150        160       170    

            300        310       320       330       340       350 
mKIAA1 LLCMIFFLIVVICK-KFQIPCPVEAALVANETVNGTFTQAALALAFNSTADDACRPRYFI
          .   :. : :. . .  : :..    :.: ..   . .:::.  . ..   .:    
mFLJ00 AAAVPVSLMQVTCSVSGNDSCGVDTDARYNDT-DAFAIMIVLALVRIGKGQGEGHPPLAN
          180       190       200        210       220       230   

              360       370       380       390       400       410
mKIAA1 F-NSQTVYAVPILTFSFVCHPAVLPIYEELKSRSRRRMMNVSKISFFAMFLMYLLAALFG
       : . :....: .  .::.:. ..  .   ..:.      ..... :. . :.  . .:..
mFLJ00 FLGVQNLFGVCV--YSFMCQHSLPSLITPISSKR-----HITRLLFLDYALILAFYGLLS
           240         250       260            270       280      

              420             430       440       450       460    
mKIAA1 YLTFYGHVESELLHTYS------EIVGTDILLLVVRLAVLVAVTLTVPVVIFPIRSSVTH
       . ...    . :.  :.      ..::   . . . :  . ... . :..   .:..   
mFLJ00 FTAIFCFRGDSLMDMYTLNFARCDVVGLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKT
        290       300       310       320       330       340      

           470       480       490        500       510       520  
mKIAA1 LLC-PTKEFSWLRHSIITVTILSFTNLLVIFVP-TIRDIFGFIGASAAAMLIFILPSAFY
       :.      . :.   ..  ::     .:: :    .... .. :: :.. . ...: :: 
mFLJ00 LFHREGGTYPWVVDRVVFPTITLVPPILVAFCTHDLESLVAITGAYAGTGIQYVIP-AFL
        350       360       370       380       390       400      

            530       540       550       560       570       
mKIAA1 IKLVKKEPMRSVQKIGALCFLLSGIVVMIGSMGLIVLDWVHDASAAGGH      
       . : .:.                                                
mFLJ00 VYLCRKDTQLTFGYGTVNKHRSPFRHTFWVAFVLLWAFSCFFFVTAYIVLKETQL
         410       420       430       440       450       460




571 residues in 1 query   sequences
1768446 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:43:04 2006 done: Mon Mar 27 10:43:04 2006
 Scan time:  0.760 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]