FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0928.ptfa, 1475 aa
 vs ./tmplib.26680 library

1767542 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.7718+/-0.00459; mu= 20.1415+/- 0.309
 mean_var=92.0381+/-20.532, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1337

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0111  ( 410 res)   mpk01295                   ( 410)  149   39  0.0019


>>mKIAA0111  ( 410 res)   mpk01295                        (410 aa)
 initn: 125 init1: 125 opt: 149  Z-score: 154.4  bits: 39.4 E(): 0.0019
Smith-Waterman score: 149;  27.059% identity (28.750% ungapped) in 85 aa overlap (58-137:313-397)

        30        40        50        60        70        80       
mKIAA0 PELAYISSNFITGHGIGKNQPRSKQMEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDI
                                     ...: ....::.  . .::.:.:  .:.:.
mKIAA0 CNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV
            290       300       310       320       330       340  

        90       100       110            120       130       140  
mKIAA0 PKCNLVVRFDLPTEYRSYVQSKGRA----RAPIS-NYVMLADTDKIKSFEEDLKTYKAIE
       :. .:.. .:::.. . :..  ::.    :  .. :.:   :   ....:.  .:     
mKIAA0 PQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM
            350       360       370       380       390       400  

            150       160       170       180       190       200  
mKIAA0 KILRNKCSKSADGAEADVHAGVDDEDAFPPYVLRPDDGGPRVTINTAIGHINRYCARLPS
                                                                   
mKIAA0 PMNVADLI                                                    
            410                                                    




1475 residues in 1 query   sequences
1767542 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:32:11 2006 done: Mon Mar 27 10:32:12 2006
 Scan time:  1.190 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]