FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1375.ptfa, 909 aa
 vs ./tmplib.26680 library

1768108 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 13.9376+/-0.0108; mu= -26.3545+/- 0.717
 mean_var=676.4758+/-163.513, 0's: 0 Z-trim: 6  B-trim: 0 in 0/36
 Lambda= 0.0493

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1929  ( 668 res)   mbp12062                   ( 668)  302   37  0.0099


>>mKIAA1929  ( 668 res)   mbp12062                        (668 aa)
 initn: 193 init1: 133 opt: 302  Z-score: 141.4  bits: 37.0 E(): 0.0099
Smith-Waterman score: 367;  31.864% identity (35.338% ungapped) in 295 aa overlap (36-319:116-392)

          10        20        30        40        50        60     
mKIAA1 RRPVGPLLRCRCRARLGRGRCPSVCAARRGGRALTMASFIWVQLKKTSEVDLAKPLVKFI
                                     :...:.  .: . ::.:.:.: : :: ..:
mKIAA1 LELSYVNSNLQLLKEELAELSTSVDVDQPEGEGITIP-MIPLGLKETKELDWATPLKELI
          90       100       110       120        130       140    

          70        80        90       100       110       120     
mKIAA1 QQTYPSGGEEQAQYCRAAEELSKLRRSALGRPLDKHEGALETLLRYYDQICSIEPKFPFS
       .. .   ::. ...    .::  ::...  :  .. :..:. :  ::.:.: .. .: ::
mKIAA1 SEHF---GEDGTSFETEIQELEDLRQAT--RTPSRDEAGLDLLAAYYSQLCFLDARF-FS
             150       160         170       180       190         

          130       140       150       160       170       180    
mKIAA1 ENQI-CLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDE
        ..   : : : :     :: :  :     .:..::. :::: .:: .::.:.:. .  :
mKIAA1 PSRSPGLLFHWYD-----SLTG--VPAQQRALAFEKGSVLFNIGALHTQIGARQDCSCTE
      200       210              220       230       240       250 

          190       200       210       220       230       240    
mKIAA1 GLKTAAKQYQFASGAFLHIKDTVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFF----
       : . ::. .: :.:::  ....    .:. :. :.:  ... :  .:.::::: .:    
mKIAA1 GTNHAAEAFQRAAGAFRLLREN----FSHAPSPDMSAASLSMLEQLMIAQAQECIFKGLL
             260       270           280       290       300       

                250        260          270       280       290    
mKIAA1 --LKATRDKMKDAI-IAKLANQAADYFG---DAFKQCQYKDTLPKEVFPTLAAKQCIMQA
          .:: :   : . .:. : :.:  .:    :. :   .: ::        .:   . :
mKIAA1 LPASATPDICPDQLQLAQEAAQVATEYGLVHRAMAQPPVRDYLPASWTNLAHVKAEHFCA
       310       320       330       340       350       360       

          300       310       320       330       340       350    
mKIAA1 NAEYHQSILAKQQKKFGEEIARLQHAAELIKNVASRYDEYVNVKDFSDKINRALTAAKKD
        :.:: ..   ...    :.:: .:.                                  
mKIAA1 LAHYHAAMALCESHPAKGELARQEHVFQPSTPHEPLGPTLPQHPEDRRKLAKAHLKRAIL
       370       380       390       400       410       420       




909 residues in 1 query   sequences
1768108 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:42:42 2006 done: Mon Mar 27 10:42:43 2006
 Scan time:  0.940 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]