FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1323.ptfa, 143 aa
 vs ./tmplib.26680 library

1768874 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.2809+/-0.0048; mu= 7.9857+/- 0.322
 mean_var=114.1851+/-26.878, 0's: 0 Z-trim: 8  B-trim: 0 in 0/36
 Lambda= 0.1200

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0646  ( 749 res)   mpf01029                   ( 749)  156   37  0.0016
mKIAA4179  ( 500 res)   mid07007                   ( 500)  140   34  0.0082


>>mKIAA0646  ( 749 res)   mpf01029                        (749 aa)
 initn:  75 init1:  75 opt: 156  Z-score: 155.8  bits: 37.1 E(): 0.0016
Smith-Waterman score: 156;  26.230% identity (29.630% ungapped) in 122 aa overlap (24-139:367-480)

                      10        20        30        40        50   
mKIAA1        EECVVCSDKKAAVLFQPCGHMCACENCASLMKKCVQCRAVVERRVPFITCCGG
                                     :.   .:..   . .:..:.    ..:   
mKIAA0 AQQQARVEQLEKTFQEEAHYLQGLEKEQGECDLKQQLVQALQEHQALMEE----LNC---
        340       350       360       370       380                

            60        70        80        90        100       110  
mKIAA1 KSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQLQDIKEQTM-CPVCLDRLKNMIF
        :..:    :.. :  . :  ... .:.:. ... ....:. :. . : .: . . . . 
mKIAA0 -SKKDFEKIIQAKNKELEQTKEEKDKVQAQKEEVLSHMNDLLENELQCIICSEYFIEAVT
      390       400       410       420       430       440        

             120           130       140                           
mKIAA1 L-CGHGTCQLCGD----RMSECPICRKAIERRILLY                        
       : :.:. :..: .    :  ::::::: :: :                            
mKIAA0 LNCAHSFCSFCINEWMKRKVECPICRKDIESRTNSLVLDNCISKMVDNLSSDVKERRSVL
      450       460       470       480       490       500        

mKIAA0 IRERRASATSLSGSDSETEGKQPCSDDFKDAFKADSLVEGTSSRYSMYNSVSQRLMAKMG
      510       520       530       540       550       560        

>>mKIAA4179  ( 500 res)   mid07007                        (500 aa)
 initn: 131 init1:  58 opt: 140  Z-score: 142.8  bits: 34.1 E(): 0.0082
Smith-Waterman score: 140;  37.288% identity (43.137% ungapped) in 59 aa overlap (91-141:32-90)

               70        80        90       100        110         
mKIAA1 DEISSGNIPVLQKDKDNTNVNADVQKLQQQLQDIKEQTMCPVCLDRLKN-MIFLCGHGTC
                                     :.... .. : :::. ::. .:. :::. :
mKIAA4 RHSGTRSREVIMAETSLLEAGTSAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFC
              10        20        30        40        50        60 

     120              130       140                                
mKIAA1 QLCGDRMSE-------CPICRKAIERRILLY                             
       . :  :  :       ::.:::. . : :                               
mKIAA4 KACITRWWEDLERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQTVKRKIRDESLCSQ
              70        80        90       100       110       120 




143 residues in 1 query   sequences
1768874 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:41:03 2006 done: Mon Mar 27 10:41:03 2006
 Scan time:  0.330 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]