# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpm05352.fasta.nr -Q ../query/mKIAA1323.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1323, 143 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7914715 sequences Expectation_n fit: rho(ln(x))= 4.8933+/-0.000185; mu= 7.2619+/- 0.010 mean_var=77.4705+/-14.913, 0's: 32 Z-trim: 71 B-trim: 11 in 1/63 Lambda= 0.145716 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|74183476|dbj|BAE36604.1| unnamed protein produc ( 264) 1029 225.1 5.2e-57 gi|15030079|gb|AAH11287.1| Mib1 protein [Mus muscu ( 395) 1029 225.3 6.9e-57 gi|53237023|gb|AAH83072.1| Mib1 protein [Mus muscu ( 458) 1029 225.3 7.7e-57 gi|26343177|dbj|BAC35245.1| unnamed protein produc ( 640) 1029 225.5 9.8e-57 gi|124297185|gb|AAI31663.1| Mib1 protein [Mus musc (1006) 1029 225.6 1.3e-56 gi|68565507|sp|Q80SY4.1|MIB1_MOUSE RecName: Full=E (1006) 1029 225.6 1.3e-56 gi|37722011|gb|AAN18022.1| MINDBOMB; Mib [Mus musc ( 997) 1025 224.8 2.4e-56 gi|149031725|gb|EDL86675.1| mindbomb homolog 1 (Dr (1006) 1019 223.5 5.8e-56 gi|19584424|emb|CAD28502.1| hypothetical protein [ ( 234) 1001 219.2 2.8e-55 gi|22761064|dbj|BAC11439.1| unnamed protein produc ( 286) 1001 219.2 3.3e-55 gi|18490242|gb|AAH22403.1| MIB1 protein [Homo sapi ( 395) 1001 219.4 4.1e-55 gi|73961878|ref|XP_547643.2| PREDICTED: similar to (1006) 1005 220.6 4.5e-55 gi|193787114|dbj|BAG52320.1| unnamed protein produ ( 795) 1001 219.7 6.7e-55 gi|51476966|emb|CAH18429.1| hypothetical protein [ ( 812) 1001 219.7 6.8e-55 gi|119621537|gb|EAX01132.1| mindbomb homolog 1 (Dr ( 923) 1001 219.7 7.5e-55 gi|37722013|gb|AAN18023.1| MINDBOMB; ubiquitin E3 ( 997) 1001 219.8 7.9e-55 gi|119916204|ref|XP_613236.3| PREDICTED: similar t (1006) 1001 219.8 8e-55 gi|109121756|ref|XP_001092086.1| PREDICTED: simila (1006) 1001 219.8 8e-55 gi|68565512|sp|Q86YT6.1|MIB1_HUMAN RecName: Full=E (1006) 1001 219.8 8e-55 gi|194214527|ref|XP_001492612.2| PREDICTED: simila (1165) 1001 219.8 8.9e-55 gi|118086868|ref|XP_419157.2| PREDICTED: similar t (1006) 995 218.5 1.9e-54 gi|126321773|ref|XP_001363212.1| PREDICTED: simila (1006) 992 217.9 3e-54 gi|68565488|sp|Q6GNY1.1|MIB1_XENLA RecName: Full=E (1011) 969 213.0 8.5e-53 gi|189442230|gb|AAI67461.1| Mib1 protein [Xenopus (1010) 959 210.9 3.6e-52 gi|110764067|ref|XP_623230.2| PREDICTED: similar t ( 428) 757 168.1 1.2e-39 gi|115770428|ref|XP_001182175.1| PREDICTED: simila ( 397) 756 167.9 1.3e-39 gi|47682719|gb|AAH69870.1| Mib1 protein [Mus muscu ( 410) 623 139.9 3.5e-31 gi|215501673|gb|EEC11167.1| conserved hypothetical ( 272) 603 135.6 4.8e-30 gi|68565506|sp|Q804S5.1|MIB1_DANRE RecName: Full=E (1030) 553 125.6 1.8e-26 gi|190339064|gb|AAI62476.1| Mib protein [Danio rer (1041) 553 125.6 1.8e-26 gi|91083325|ref|XP_974870.1| PREDICTED: similar to (1026) 446 103.1 1.1e-19 gi|212517900|gb|EEB19729.1| mind bomb, putative [P ( 398) 428 98.9 7.5e-19 gi|198414816|ref|XP_002123823.1| PREDICTED: simila ( 524) 429 99.2 7.9e-19 gi|156223774|gb|EDO44606.1| predicted protein [Nem ( 191) 420 96.9 1.4e-18 gi|108871724|gb|EAT35949.1| mind bomb [Aedes aegyp (1141) 413 96.2 1.4e-17 gi|190654944|gb|EDV52187.1| GG13506 [Drosophila er (1219) 409 95.4 2.7e-17 gi|194186204|gb|EDW99815.1| GE23125 [Drosophila ya (1220) 407 95.0 3.6e-17 gi|194197050|gb|EDX10626.1| GD12522 [Drosophila si (1169) 406 94.7 4e-17 gi|194119613|gb|EDW41656.1| GM24452 [Drosophila se (1205) 406 94.8 4.1e-17 gi|157013308|gb|EAA00278.4| AGAP011932-PA [Anophel (1186) 405 94.5 4.7e-17 gi|194165268|gb|EDW80169.1| GK23617 [Drosophila wi (1228) 405 94.6 4.8e-17 gi|156216549|gb|EDO37483.1| predicted protein [Nem ( 186) 395 91.7 5.4e-17 gi|68565370|sp|Q9VUX2.3|MIB_DROME RecName: Full=E3 (1226) 404 94.3 5.5e-17 gi|167872480|gb|EDS35863.1| E3 ubiquitin-protein l (1121) 400 93.5 9.3e-17 gi|26348805|dbj|BAC38042.1| unnamed protein produc ( 568) 395 92.1 1.2e-16 gi|194112677|gb|EDW34720.1| GL12818 [Drosophila pe (1176) 389 91.2 4.8e-16 gi|193898764|gb|EDV97630.1| GH16977 [Drosophila gr (1193) 389 91.2 4.8e-16 gi|190624603|gb|EDV40127.1| GF10363 [Drosophila an (1205) 389 91.2 4.9e-16 gi|54641768|gb|EAL30518.1| GA19171 [Drosophila pse (1208) 389 91.2 4.9e-16 gi|194155245|gb|EDW70429.1| GJ13769 [Drosophila vi (1212) 388 91.0 5.7e-16 >>gi|74183476|dbj|BAE36604.1| unnamed protein product [M (264 aa) initn: 1029 init1: 1029 opt: 1029 Z-score: 1179.8 bits: 225.1 E(): 5.2e-57 Smith-Waterman score: 1029; 100.000% identity (100.000% similar) in 143 aa overlap (1-143:122-264) 10 20 30 mKIAA1 EECVVCSDKKAAVLFQPCGHMCACENCASL :::::::::::::::::::::::::::::: gi|741 CGHIATCSLCSPRVKKCLICKEQVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCASL 100 110 120 130 140 150 40 50 60 70 80 90 mKIAA1 MKKCVQCRAVVERRVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 MKKCVQCRAVVERRVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ 160 170 180 190 200 210 100 110 120 130 140 mKIAA1 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY 220 230 240 250 260 >>gi|15030079|gb|AAH11287.1| Mib1 protein [Mus musculus] (395 aa) initn: 1029 init1: 1029 opt: 1029 Z-score: 1177.6 bits: 225.3 E(): 6.9e-57 Smith-Waterman score: 1029; 100.000% identity (100.000% similar) in 143 aa overlap (1-143:253-395) 10 20 30 mKIAA1 EECVVCSDKKAAVLFQPCGHMCACENCASL :::::::::::::::::::::::::::::: gi|150 CGHIATCSLCSPRVKKCLICKEQVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCASL 230 240 250 260 270 280 40 50 60 70 80 90 mKIAA1 MKKCVQCRAVVERRVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|150 MKKCVQCRAVVERRVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ 290 300 310 320 330 340 100 110 120 130 140 mKIAA1 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|150 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY 350 360 370 380 390 >>gi|53237023|gb|AAH83072.1| Mib1 protein [Mus musculus] (458 aa) initn: 1029 init1: 1029 opt: 1029 Z-score: 1176.8 bits: 225.3 E(): 7.7e-57 Smith-Waterman score: 1029; 100.000% identity (100.000% similar) in 143 aa overlap (1-143:316-458) 10 20 30 mKIAA1 EECVVCSDKKAAVLFQPCGHMCACENCASL :::::::::::::::::::::::::::::: gi|532 CGHIATCSLCSPRVKKCLICKEQVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCASL 290 300 310 320 330 340 40 50 60 70 80 90 mKIAA1 MKKCVQCRAVVERRVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|532 MKKCVQCRAVVERRVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ 350 360 370 380 390 400 100 110 120 130 140 mKIAA1 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|532 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY 410 420 430 440 450 >>gi|26343177|dbj|BAC35245.1| unnamed protein product [M (640 aa) initn: 1029 init1: 1029 opt: 1029 Z-score: 1174.9 bits: 225.5 E(): 9.8e-57 Smith-Waterman score: 1029; 100.000% identity (100.000% similar) in 143 aa overlap (1-143:498-640) 10 20 30 mKIAA1 EECVVCSDKKAAVLFQPCGHMCACENCASL :::::::::::::::::::::::::::::: gi|263 CGHIATCSLCSPRVKKCLICKEQVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCASL 470 480 490 500 510 520 40 50 60 70 80 90 mKIAA1 MKKCVQCRAVVERRVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 MKKCVQCRAVVERRVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ 530 540 550 560 570 580 100 110 120 130 140 mKIAA1 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY 590 600 610 620 630 640 >>gi|124297185|gb|AAI31663.1| Mib1 protein [Mus musculus (1006 aa) initn: 1029 init1: 1029 opt: 1029 Z-score: 1172.4 bits: 225.6 E(): 1.3e-56 Smith-Waterman score: 1029; 100.000% identity (100.000% similar) in 143 aa overlap (1-143:864-1006) 10 20 30 mKIAA1 EECVVCSDKKAAVLFQPCGHMCACENCASL :::::::::::::::::::::::::::::: gi|124 CGHIATCSLCSPRVKKCLICKEQVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCASL 840 850 860 870 880 890 40 50 60 70 80 90 mKIAA1 MKKCVQCRAVVERRVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 MKKCVQCRAVVERRVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ 900 910 920 930 940 950 100 110 120 130 140 mKIAA1 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY 960 970 980 990 1000 >>gi|68565507|sp|Q80SY4.1|MIB1_MOUSE RecName: Full=E3 ub (1006 aa) initn: 1029 init1: 1029 opt: 1029 Z-score: 1172.4 bits: 225.6 E(): 1.3e-56 Smith-Waterman score: 1029; 100.000% identity (100.000% similar) in 143 aa overlap (1-143:864-1006) 10 20 30 mKIAA1 EECVVCSDKKAAVLFQPCGHMCACENCASL :::::::::::::::::::::::::::::: gi|685 CGHIATCSLCSPRVKKCLICKEQVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCASL 840 850 860 870 880 890 40 50 60 70 80 90 mKIAA1 MKKCVQCRAVVERRVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 MKKCVQCRAVVERRVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ 900 910 920 930 940 950 100 110 120 130 140 mKIAA1 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY 960 970 980 990 1000 >>gi|37722011|gb|AAN18022.1| MINDBOMB; Mib [Mus musculus (997 aa) initn: 1025 init1: 1025 opt: 1025 Z-score: 1167.9 bits: 224.8 E(): 2.4e-56 Smith-Waterman score: 1025; 99.301% identity (100.000% similar) in 143 aa overlap (1-143:855-997) 10 20 30 mKIAA1 EECVVCSDKKAAVLFQPCGHMCACENCASL :::::::::::::::::::::::::::::: gi|377 CGHIATCSLCSPRVKKCLICKEQVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCASL 830 840 850 860 870 880 40 50 60 70 80 90 mKIAA1 MKKCVQCRAVVERRVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|377 MKKCVQCRAVVERKVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ 890 900 910 920 930 940 100 110 120 130 140 mKIAA1 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|377 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY 950 960 970 980 990 >>gi|149031725|gb|EDL86675.1| mindbomb homolog 1 (Drosop (1006 aa) initn: 1019 init1: 1019 opt: 1019 Z-score: 1161.0 bits: 223.5 E(): 5.8e-56 Smith-Waterman score: 1019; 98.601% identity (100.000% similar) in 143 aa overlap (1-143:864-1006) 10 20 30 mKIAA1 EECVVCSDKKAAVLFQPCGHMCACENCASL :::::::::::::::::::::::::::::: gi|149 CGHIATCSLCSPRVKKCLICKEQVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCASL 840 850 860 870 880 890 40 50 60 70 80 90 mKIAA1 MKKCVQCRAVVERRVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ :::::::::::::::::::::::::::.:::.:::::::::::::::::::::::::::: gi|149 MKKCVQCRAVVERRVPFITCCGGKSSEEPSDDISSGNIPVLQKDKDNTNVNADVQKLQQQ 900 910 920 930 940 950 100 110 120 130 140 mKIAA1 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY 960 970 980 990 1000 >>gi|19584424|emb|CAD28502.1| hypothetical protein [Homo (234 aa) initn: 1001 init1: 1001 opt: 1001 Z-score: 1148.7 bits: 219.2 E(): 2.8e-55 Smith-Waterman score: 1001; 96.503% identity (98.601% similar) in 143 aa overlap (1-143:92-234) 10 20 30 mKIAA1 EECVVCSDKKAAVLFQPCGHMCACENCASL ::::::::::::::::::::::::::::.: gi|195 CGHIATCSLCSPRVKKCLICKEQVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCANL 70 80 90 100 110 120 40 50 60 70 80 90 mKIAA1 MKKCVQCRAVVERRVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ :::::::::::::::::: ::::::::: .:.:::::::::::::::::::::::::::: gi|195 MKKCVQCRAVVERRVPFIMCCGGKSSEDATDDISSGNIPVLQKDKDNTNVNADVQKLQQQ 130 140 150 160 170 180 100 110 120 130 140 mKIAA1 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|195 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY 190 200 210 220 230 >>gi|22761064|dbj|BAC11439.1| unnamed protein product [H (286 aa) initn: 1001 init1: 1001 opt: 1001 Z-score: 1147.6 bits: 219.2 E(): 3.3e-55 Smith-Waterman score: 1001; 96.503% identity (98.601% similar) in 143 aa overlap (1-143:144-286) 10 20 30 mKIAA1 EECVVCSDKKAAVLFQPCGHMCACENCASL ::::::::::::::::::::::::::::.: gi|227 CGHIATCSLCSPRVKKCLICKEQVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCANL 120 130 140 150 160 170 40 50 60 70 80 90 mKIAA1 MKKCVQCRAVVERRVPFITCCGGKSSEDPSDEISSGNIPVLQKDKDNTNVNADVQKLQQQ :::::::::::::::::: ::::::::: .:.:::::::::::::::::::::::::::: gi|227 MKKCVQCRAVVERRVPFIMCCGGKSSEDATDDISSGNIPVLQKDKDNTNVNADVQKLQQQ 180 190 200 210 220 230 100 110 120 130 140 mKIAA1 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|227 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY 240 250 260 270 280 143 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 18:04:04 2009 done: Fri Mar 13 18:08:01 2009 Total Scan time: 569.910 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]