# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpm05157.fasta.nr -Q ../query/mKIAA0077.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0077, 147 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921232 sequences Expectation_n fit: rho(ln(x))= 4.9554+/-0.00018; mu= 7.2058+/- 0.010 mean_var=62.4864+/-12.141, 0's: 39 Z-trim: 42 B-trim: 0 in 0/66 Lambda= 0.162249 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|32484278|gb|AAH54364.1| Psme4 protein [Mus musc ( 161) 981 237.4 6.4e-61 gi|13435418|gb|AAH04575.1| Psme4 protein [Mus musc ( 188) 981 237.5 7.2e-61 gi|74138569|dbj|BAE41181.1| unnamed protein produc ( 211) 981 237.5 7.9e-61 gi|47939556|gb|AAH71768.1| PSME4 protein [Homo sap ( 215) 975 236.1 2.1e-60 gi|21410453|gb|AAH31174.1| Psme4 protein [Mus musc ( 727) 981 237.8 2.1e-60 gi|67969064|dbj|BAE00887.1| unnamed protein produc ( 330) 975 236.2 3e-60 gi|148691839|gb|EDL23786.1| proteasome (prosome, m (1108) 981 238.0 3e-60 gi|28175817|gb|AAH43602.1| PSME4 protein [Homo sap ( 459) 975 236.3 3.9e-60 gi|81862437|sp|Q5SSW2.1|PSME4_MOUSE RecName: Full= (1843) 981 238.1 4.5e-60 gi|126717415|gb|AAI33425.1| PSME4 protein [Bos tau ( 196) 967 234.2 7.3e-60 gi|62467428|gb|AAX83870.1| proteasome activator 20 ( 987) 975 236.5 7.3e-60 gi|62467426|gb|AAX83869.1| proteasome activator 20 (1218) 975 236.6 8.6e-60 gi|194220729|ref|XP_001497130.2| PREDICTED: protea (1218) 975 236.6 8.6e-60 gi|149044862|gb|EDL98048.1| rCG23342, isoform CRA_ (1018) 973 236.1 1e-59 gi|85566853|gb|AAI12170.1| Proteasome (prosome, ma (1729) 975 236.7 1.1e-59 gi|73970154|ref|XP_531823.2| PREDICTED: similar to (1774) 975 236.7 1.2e-59 gi|134034993|sp|Q14997.2|PSME4_HUMAN RecName: Full (1843) 975 236.7 1.2e-59 gi|149044860|gb|EDL98046.1| rCG23342, isoform CRA_ (1843) 973 236.2 1.7e-59 gi|109500155|ref|XP_001055468.1| PREDICTED: simila (2011) 973 236.3 1.8e-59 gi|9954445|gb|AAG09060.1|AF296169_1 TEMO [Mus musc (1803) 970 235.5 2.7e-59 gi|119903486|ref|XP_606554.3| PREDICTED: proteasom (1843) 967 234.8 4.4e-59 gi|59861844|gb|AAH90326.1| Psme4 protein [Rattus n ( 140) 948 229.6 1.2e-58 gi|149449017|ref|XP_001517136.1| PREDICTED: simila (1820) 957 232.5 2.2e-58 gi|53130378|emb|CAG31518.1| hypothetical protein [ ( 220) 906 219.9 1.6e-55 gi|157909816|ref|NP_001006393.2| proteasome (proso (1729) 906 220.5 8.3e-55 gi|118087533|ref|XP_001232435.1| PREDICTED: protea (1829) 906 220.5 8.7e-55 gi|82185264|sp|Q6NRP2.1|PSME4_XENLA RecName: Full= (1828) 905 220.3 1e-54 gi|224047502|ref|XP_002197078.1| PREDICTED: protea (1820) 904 220.1 1.2e-54 gi|61402580|gb|AAH91938.1| LOC553346 protein [Dani ( 286) 877 213.2 2.2e-53 gi|189525999|ref|XP_001922121.1| PREDICTED: simila (1827) 877 213.8 9.6e-53 gi|189524182|ref|XP_001333755.2| PREDICTED: simila (1794) 840 205.1 3.8e-50 gi|210089777|gb|EEA38074.1| hypothetical protein B (1793) 679 167.4 8.5e-39 gi|210115757|gb|EEA63506.1| hypothetical protein B (1825) 679 167.4 8.6e-39 gi|47208204|emb|CAF90547.1| unnamed protein produc ( 437) 659 162.3 7e-38 gi|115730907|ref|XP_794837.2| PREDICTED: similar t (1834) 652 161.1 6.9e-37 gi|215504087|gb|EEC13581.1| proteasome activator c (1849) 539 134.6 6.3e-29 gi|198419317|ref|XP_002119300.1| PREDICTED: simila (1913) 539 134.6 6.5e-29 gi|108883868|gb|EAT48093.1| conserved hypothetical (1836) 468 118.0 6.4e-24 gi|91083491|ref|XP_972018.1| PREDICTED: similar to (1808) 458 115.7 3.2e-23 gi|167875247|gb|EDS38630.1| conserved hypothetical (1830) 457 115.4 3.8e-23 gi|47208202|emb|CAF90545.1| unnamed protein produc ( 366) 448 112.9 4.5e-23 gi|157018060|gb|EAA08046.4| AGAP002597-PA [Anophel (1847) 455 115.0 5.3e-23 gi|90084383|dbj|BAE91033.1| unnamed protein produc ( 592) 417 105.8 1e-20 gi|212512601|gb|EEB15344.1| conserved hypothetical (1809) 411 104.7 6.5e-20 gi|110756754|ref|XP_001121383.1| PREDICTED: simila (1758) 398 101.6 5.3e-19 gi|156543136|ref|XP_001605678.1| PREDICTED: simila (1874) 397 101.4 6.5e-19 gi|104531912|gb|ABF72898.1| proteasome activator-l ( 425) 386 98.4 1.2e-18 gi|156551762|ref|XP_001602296.1| PREDICTED: simila (1805) 386 98.8 3.8e-18 gi|158595329|gb|EDP33891.1| conserved hypothetical ( 205) 371 94.7 7.5e-18 gi|190589421|gb|EDV29443.1| hypothetical protein T (1540) 378 96.9 1.2e-17 >>gi|32484278|gb|AAH54364.1| Psme4 protein [Mus musculus (161 aa) initn: 981 init1: 981 opt: 981 Z-score: 1250.0 bits: 237.4 E(): 6.4e-61 Smith-Waterman score: 981; 99.310% identity (100.000% similar) in 145 aa overlap (3-147:17-161) 10 20 30 40 mKIAA0 LFLQVREMAATTLSGLLQCNFLTMDSAMQIHFEQLCKTKLPKKRKR :.:::::::::::::::::::::::::::::::::::::::::: gi|324 VKDIRWLIICLLEDEQLEVREMAATTLSGLLQCNFLTMDSAMQIHFEQLCKTKLPKKRKR 10 20 30 40 50 60 50 60 70 80 90 100 mKIAA0 DPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLNDPQPIEMTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|324 DPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLNDPQPIEMTV 70 80 90 100 110 120 110 120 130 140 mKIAA0 KKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA ::::::::::::::::::::::::::::::::::::::::: gi|324 KKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 130 140 150 160 >>gi|13435418|gb|AAH04575.1| Psme4 protein [Mus musculus (188 aa) initn: 981 init1: 981 opt: 981 Z-score: 1249.1 bits: 237.5 E(): 7.2e-61 Smith-Waterman score: 981; 99.310% identity (100.000% similar) in 145 aa overlap (3-147:44-188) 10 20 30 mKIAA0 LFLQVREMAATTLSGLLQCNFLTMDSAMQIHF :.:::::::::::::::::::::::::::: gi|134 VFYNLFIFLNNEDAVKDIRWLIICLLEDEQLEVREMAATTLSGLLQCNFLTMDSAMQIHF 20 30 40 50 60 70 40 50 60 70 80 90 mKIAA0 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL 80 90 100 110 120 130 100 110 120 130 140 mKIAA0 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 140 150 160 170 180 >>gi|74138569|dbj|BAE41181.1| unnamed protein product [M (211 aa) initn: 981 init1: 981 opt: 981 Z-score: 1248.3 bits: 237.5 E(): 7.9e-61 Smith-Waterman score: 981; 99.310% identity (100.000% similar) in 145 aa overlap (3-147:67-211) 10 20 30 mKIAA0 LFLQVREMAATTLSGLLQCNFLTMDSAMQIHF :.:::::::::::::::::::::::::::: gi|741 VFYNLFIFLNNEDAVKDIRWLIICLLEDEQLEVREMAATTLSGLLQCNFLTMDSAMQIHF 40 50 60 70 80 90 40 50 60 70 80 90 mKIAA0 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL 100 110 120 130 140 150 100 110 120 130 140 mKIAA0 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 160 170 180 190 200 210 >>gi|47939556|gb|AAH71768.1| PSME4 protein [Homo sapiens (215 aa) initn: 975 init1: 975 opt: 975 Z-score: 1240.6 bits: 236.1 E(): 2.1e-60 Smith-Waterman score: 975; 98.621% identity (99.310% similar) in 145 aa overlap (3-147:71-215) 10 20 30 mKIAA0 LFLQVREMAATTLSGLLQCNFLTMDSAMQIHF :.:::::::::::::::::::::: ::::: gi|479 VFYNLFIFLNNEDAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCNFLTMDSPMQIHF 50 60 70 80 90 100 40 50 60 70 80 90 mKIAA0 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|479 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL 110 120 130 140 150 160 100 110 120 130 140 mKIAA0 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|479 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 170 180 190 200 210 >>gi|21410453|gb|AAH31174.1| Psme4 protein [Mus musculus (727 aa) initn: 981 init1: 981 opt: 981 Z-score: 1240.6 bits: 237.8 E(): 2.1e-60 Smith-Waterman score: 981; 99.310% identity (100.000% similar) in 145 aa overlap (3-147:583-727) 10 20 30 mKIAA0 LFLQVREMAATTLSGLLQCNFLTMDSAMQIHF :.:::::::::::::::::::::::::::: gi|214 VFYNLFIFLNNEDAVKDIRWLIICLLEDEQLEVREMAATTLSGLLQCNFLTMDSAMQIHF 560 570 580 590 600 610 40 50 60 70 80 90 mKIAA0 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|214 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL 620 630 640 650 660 670 100 110 120 130 140 mKIAA0 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|214 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 680 690 700 710 720 >>gi|67969064|dbj|BAE00887.1| unnamed protein product [M (330 aa) initn: 975 init1: 975 opt: 975 Z-score: 1238.0 bits: 236.2 E(): 3e-60 Smith-Waterman score: 975; 98.621% identity (99.310% similar) in 145 aa overlap (3-147:186-330) 10 20 30 mKIAA0 LFLQVREMAATTLSGLLQCNFLTMDSAMQIHF :.:::::::::::::::::::::: ::::: gi|679 VFYNLFIFLNNEDAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCNFLTMDSPMQIHF 160 170 180 190 200 210 40 50 60 70 80 90 mKIAA0 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|679 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL 220 230 240 250 260 270 100 110 120 130 140 mKIAA0 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|679 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 280 290 300 310 320 330 >>gi|148691839|gb|EDL23786.1| proteasome (prosome, macro (1108 aa) initn: 981 init1: 981 opt: 981 Z-score: 1238.0 bits: 238.0 E(): 3e-60 Smith-Waterman score: 981; 99.310% identity (100.000% similar) in 145 aa overlap (3-147:925-1069) 10 20 30 mKIAA0 LFLQVREMAATTLSGLLQCNFLTMDSAMQIHF :.:::::::::::::::::::::::::::: gi|148 VFYNLFIFLNNEDAVKDIRWLIICLLEDEQLEVREMAATTLSGLLQCNFLTMDSAMQIHF 900 910 920 930 940 950 40 50 60 70 80 90 mKIAA0 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL 960 970 980 990 1000 1010 100 110 120 130 140 mKIAA0 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYAAVEFS 1020 1030 1040 1050 1060 1070 gi|148 ISRAMGHESEVLTALCLESHEEKRIKGGKVSELT 1080 1090 1100 >>gi|28175817|gb|AAH43602.1| PSME4 protein [Homo sapiens (459 aa) initn: 975 init1: 975 opt: 975 Z-score: 1235.9 bits: 236.3 E(): 3.9e-60 Smith-Waterman score: 975; 98.621% identity (99.310% similar) in 145 aa overlap (3-147:315-459) 10 20 30 mKIAA0 LFLQVREMAATTLSGLLQCNFLTMDSAMQIHF :.:::::::::::::::::::::: ::::: gi|281 VFYNLFIFLNNEDAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCNFLTMDSPMQIHF 290 300 310 320 330 340 40 50 60 70 80 90 mKIAA0 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL 350 360 370 380 390 400 100 110 120 130 140 mKIAA0 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 410 420 430 440 450 >>gi|81862437|sp|Q5SSW2.1|PSME4_MOUSE RecName: Full=Prot (1843 aa) initn: 981 init1: 981 opt: 981 Z-score: 1234.8 bits: 238.1 E(): 4.5e-60 Smith-Waterman score: 981; 99.310% identity (100.000% similar) in 145 aa overlap (3-147:1699-1843) 10 20 30 mKIAA0 LFLQVREMAATTLSGLLQCNFLTMDSAMQIHF :.:::::::::::::::::::::::::::: gi|818 VFYNLFIFLNNEDAVKDIRWLIICLLEDEQLEVREMAATTLSGLLQCNFLTMDSAMQIHF 1670 1680 1690 1700 1710 1720 40 50 60 70 80 90 mKIAA0 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL 1730 1740 1750 1760 1770 1780 100 110 120 130 140 mKIAA0 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 1790 1800 1810 1820 1830 1840 >>gi|126717415|gb|AAI33425.1| PSME4 protein [Bos taurus] (196 aa) initn: 967 init1: 967 opt: 967 Z-score: 1231.1 bits: 234.2 E(): 7.3e-60 Smith-Waterman score: 967; 97.931% identity (98.621% similar) in 145 aa overlap (3-147:52-196) 10 20 30 mKIAA0 LFLQVREMAATTLSGLLQCNFLTMDSAMQIHF :.:::::::::::::::::::::: ::::: gi|126 VFYNLFIFLNNEDAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCNFLTMDSPMQIHF 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA0 EQLCKTKLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: gi|126 EQLCKTKLPKKRKRDPGFVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNL 90 100 110 120 130 140 100 110 120 130 140 mKIAA0 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 SAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 150 160 170 180 190 147 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 18:32:54 2009 done: Thu Mar 12 18:37:00 2009 Total Scan time: 589.930 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]