FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1071.ptfa, 539 aa vs ./tmplib.26680 library 1768478 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 14.0401+/-0.00937; mu= -30.7587+/- 0.615 mean_var=576.1386+/-143.360, 0's: 0 Z-trim: 13 B-trim: 2 in 1/35 Lambda= 0.0534 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mFLJ00155 ( 785 res) mic02031 ( 785) 943 87 4.6e-18 mKIAA0989 ( 807 res) mpm12317 ( 807) 676 67 7.3e-12 mKIAA0613 ( 730 res) mfj11041 ( 730) 322 39 0.0011 mKIAA0656 ( 608 res) mbg00689 ( 608) 293 37 0.0046 mKIAA0845 ( 1046 res) mbh00862 (1046) 294 37 0.0065 mKIAA0975 ( 1480 res) mbg09869 (1480) 297 38 0.0072 >>mFLJ00155 ( 785 res) mic02031 (785 aa) initn: 664 init1: 579 opt: 943 Z-score: 416.7 bits: 87.4 E(): 4.6e-18 Smith-Waterman score: 945; 54.276% identity (57.895% ungapped) in 304 aa overlap (1-288:443-743) 10 20 30 mKIAA1 ALVQLQAACEKREQLEHRLRTRLERELESL ::.:::.::::: :.:.:::: :::::..: mFLJ00 LSNAQARVIKLEEELREKQAYVEKVEKLQQALTQLQSACEKRGQMERRLRTWLERELDAL 420 430 440 450 460 470 40 50 60 70 80 90 mKIAA1 RIQQRQGNSQPTNASEYNAAALMELLREKEERILALEADMTKWEQKYLEENVMRHFALDA : ::..:.. :.. : :: :::::.::::::::::::::::::::::::...::::..: mFLJ00 RTQQKHGTGPPVSLPECNAPALMELVREKEERILALEADMTKWEQKYLEESTIRHFAMSA 480 490 500 510 520 530 100 110 120 130 140 mKIAA1 AATVAAQRDTTVISHSPNTSY-DTALEARIQKEEEEILMANKRCLDMEGRIKTLHAQIIE ::...:.::::. .:: : :: ...:::.: ::::...::.:: ::: ::.:::.::: mFLJ00 AAAATAERDTTISNHSRNGSYGESSLEAHIWPEEEEVVQANRRCQDMEYTIKNLHAKIIE 540 550 560 570 580 590 150 160 170 180 190 200 mKIAA1 KDAMIKVLQQRSRKEPSKTEQLSSMRPAKSLMSISNAGSGLLAHSSTLTGAPIMEEKRDD ::::::::::::::. .::.. .:.:::.:. ::. :..: .....::.. . :::... mFLJ00 KDAMIKVLQQRSRKDAGKTDS-ASLRPARSVPSIA-AATGTHSRQTSLTSSQLTEEKKEE 600 610 620 630 640 650 210 220 230 240 250 260 mKIAA1 KS-WKGSLGVLLGGDYRVE---PV-PSTPSP---VPPSTPLLSA-HSKTGSRDCSTQTER :. ::::.: ::: ... . :. :.::. .: :: :. :.::::.: ::::.. mFLJ00 KTTWKGSIGFLLGKEHQGQASAPLLPTTPASALSLPASTTSASSTHAKTGSKDSSTQTDK 660 670 680 690 700 710 270 280 290 300 310 mKIAA1 GPEST-KTAAVTPI-----SAPMAGPVAAAAPAAAINATAATNTATAATNTTIMVAAAPV . : . : : .:: .:. ::: mFLJ00 STELFWPSMASLPSRGRLSTAPSNSPILKH-PAAKGAVEKQENSPGHGKASEHRGRVSNL 720 730 740 750 760 320 330 340 350 360 370 mKIAA1 AVAAVAAPAAAAATPSPANAAALAAAAAPATSVSAATSVSAANSISPAAPVAPAAVVPPA mFLJ00 LHKPEFPDGEMMEVLI 770 780 >>mKIAA0989 ( 807 res) mpm12317 (807 aa) initn: 746 init1: 288 opt: 676 Z-score: 305.3 bits: 66.8 E(): 7.3e-12 Smith-Waterman score: 756; 46.226% identity (53.261% ungapped) in 318 aa overlap (1-309:523-807) 10 20 30 mKIAA1 ALVQLQAACEKREQLEHRLRTRLERELESL :: ::::::::::::: :::::::.::..: mKIAA0 LGNAQSRAARAEEELRKKQAYVEKVERLQQALGQLQAACEKREQLELRLRTRLEQELKAL 500 510 520 530 540 550 40 50 60 70 80 mKIAA1 RIQQRQ------GNSQPTNASEYNAAALMELLREKEERILALEADMTKWEQKYLEENVMR : :::: :... ...: .: : : ::::::.:::::::::::::::::: .:: mKIAA0 RAQQRQTGTLAGGGGSHGGSAELSALRLSEQLREKEEQILALEADMTKWEQKYLEERAMR 560 570 580 590 600 610 90 100 110 120 130 140 mKIAA1 HFALDAAATVAAQRDTTVISHSPNTSYDTALEARIQKEEEEILMANKRCLDMEGRIKTLH .::.:::::.:::::::.: :::. : ..... : .: .:.: .::.:.:.:: mKIAA0 QFAMDAAATAAAQRDTTLIRHSPQPSPSSSFN-------EGLLPGNHRHQEMESRLKVLH 620 630 640 650 660 150 160 170 180 190 200 mKIAA1 AQIIEKDAMIKVLQQRSRKEPSKTEQLSSMRPAKSLMSISNAGSGLLAHSSTLTGAPIME :::.::::.::::::::::.:.:. : ...:::::. :: :. : mKIAA0 AQILEKDAVIKVLQQRSRKDPGKATQ-GTLRPAKSVPSIFAAAVGT-------------- 670 680 690 700 710 210 220 230 240 250 260 mKIAA1 EKRDDKSWKGSLGVLLGGDYRVEPVPS---TPSPVPPSTPLLSAHSKTGSRDCSTQTERG ..:.: :.... ... :. .:. ::.: : ::.: :::: ::::. : mKIAA0 -----QGWQG----LVSSERQTDARPAGDRVPAEEPPATAPLPAHTKHGSRDGSTQTD-G 720 730 740 750 760 270 280 290 300 310 320 mKIAA1 PESTKTAAVTPISAPMAGPVAAAAPAAAINATAATNTATAATNTTIMVAAAPVAVAAVAA : .. .: .. . : .. . .... ::: . . . :.. mKIAA0 PADNTSACLASEPDGLLG-CNSSQRTPSLDSIAATRVQDLSDMVEILI 770 780 790 800 330 340 350 360 370 380 mKIAA1 PAAAAATPSPANAAALAAAAAPATSVSAATSVSAANSISPAAPVAPAAVVPPAAPVSPAA >>mKIAA0613 ( 730 res) mfj11041 (730 aa) initn: 333 init1: 222 opt: 322 Z-score: 158.4 bits: 39.5 E(): 0.0011 Smith-Waterman score: 356; 25.522% identity (28.871% ungapped) in 431 aa overlap (90-492:84-492) 60 70 80 90 100 110 mKIAA1 EERILALEADMTKWEQKYLEENVMRHFALDAAATVAAQRDTTVISHSPNTSYDTALEA-- :: . .: : .: . ::. : ::: mKIAA0 TGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQN 60 70 80 90 100 110 120 130 140 150 160 mKIAA1 RIQKEEEEI---LMANKRCLDMEGRIKTL--------HAQIIEKDAMIKVLQQRSRKEPS .:.. .. :. .:: . . . : ... .. :.: mKIAA0 KIKSASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPHQKVVANSPANADYQERFNPSVL 120 130 140 150 160 170 170 180 190 200 210 220 mKIAA1 KTEQLSSMRP--AKSLMSISNAGSGLLAHSSTLTGAPIMEEKRDDKSWKGSLGVLLGGDY : ::. .: .:.: .:.. . :.. : .. . . :. . :.:. mKIAA0 KDSALSTHKPIEVKGL-----GGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQ-GSDF 180 190 200 210 220 230 240 250 260 270 mKIAA1 R-VEPVPSTPSP---VPPSTPLLSAHSKTGSRDCSTQTERGPESTKTAAVT-PISAPMAG . :. : : : ..:. .: :: :. . : . .:.. . . : : :.: mKIAA0 SGASPLASLPVKDLAVDSASPVYQAVIKTQSKPEDEADEWARRSSNLQSRSFRILAQMTG 230 240 250 260 270 280 280 290 300 310 320 330 mKIAA1 PVAAAAPAAAINATAATNTATAATNTTIMVAAAPVAVAAVAAPAAAAATPSPANAAALAA : . : ..: . ::: .. ...: :.. ::: :. .:: mKIAA0 TEYMQDP----DEEALRRSSTP-------IEHAPVCTSQATSPLLPASAQSPAAASPIAA 290 300 310 320 330 340 350 360 370 380 390 mKIAA1 AAAPATSVSAATSVSAANSISPAA-----PVAPAAVVPPAAPVSPAAAVQIPAAASLTPA . :. ...::: ..::.. .::: : :.. ::: .::: ... .. : :: mKIAA0 S--PTLATAAATHAAAASAAGPAASPVENPRPQASAYSPAAAASPAPSAH--TSYSEGPA 340 350 360 370 380 390 400 410 420 430 440 450 mKIAA1 TVSPTA-ATATAAVAAATTAAITAAAAAATTAIQVAPATSAPVPSPASIPAPATAQASAP . .: ...::.. .. . :.. . . . . .:. .: :.:: :.:: . . .: mKIAA0 APAPKPRVVTTASIRPSVYQPVPASSYSPSPGANYSPTPYTPSPAPAYTPSPAPTYTPSP 400 410 420 430 440 450 460 470 480 490 500 510 mKIAA1 TPTQASTPAPTEPPSPVP--TPTPALVQTEGPANPGASSGPRRLSTPNLMCNPDKPDAPA .:: . .:::. :::.: ::::. . . ::.. .:: : mKIAA0 APTYSPSPAPAYTPSPAPNYTPTPSAAYSGGPSE-SASRPPWVTDDSFSQKFAPGKSTTT 460 470 480 490 500 510 520 530 mKIAA1 FHSSTLERKTPIQILGQEPDAEMVEYLI mKIAA0 VSKQTLPWGAPAYNPTGPQVTPLARGTFQRAERFPASSRTPLCGHCNNVIRGPFLVAMGR 520 530 540 550 560 570 >>mKIAA0656 ( 608 res) mbg00689 (608 aa) initn: 181 init1: 181 opt: 293 Z-score: 147.4 bits: 37.2 E(): 0.0046 Smith-Waterman score: 294; 35.039% identity (40.639% ungapped) in 254 aa overlap (261-490:94-336) 240 250 260 270 280 290 mKIAA1 STPSPVPPSTPLLSAHSKTGSRDCSTQTERGPESTKTAAVTPISAPMAGPVAAAAPAAAI : .: . . .: ::.. : : :. mKIAA0 LQPDFSGAAAGAAAPVVPPSGGATAWGDLLGEDSLAALSSVPCEAPISDPFAPE-PSPP- 70 80 90 100 110 120 300 310 320 330 340 350 mKIAA1 NATAATNTATAATNTTIMVAAAPVAVAAVAAPAAAAATPSPANAAALAAAAAPATSVSAA :..:. :.:...:: :.:. . : . : ::.:. : ::. .:.:::: . .: mKIAA0 --TTTTEPASASASTTTAVTAVTTEVDLFGD--AFAASPGEAPAAS-EGATAPATPAPVA 130 140 150 160 170 360 370 380 390 mKIAA1 TSVSAANSISPAAP------VAPA----AVVPP--AAPV-SPAA--AVQIPAAA-SLTPA ....: .. .: :: .:: :. :: .::: .:.: : .::.: : .:. mKIAA0 AALDACSGNDPFAPSEGSAEAAPELDLFAMKPPETSAPVVTPTASTAPPVPATAPSPAPT 180 190 200 210 220 230 400 410 420 430 440 450 mKIAA1 TVSPTAATATAAVAAATTAAITAAAA---AATTAIQVAPATSAPVPSPASIPAPATAQAS .:. ::::.:::.::.:::. .:::: :: :... .: :. : : . mKIAA0 AVAATAATTTAAAAATTTATTSAAAATTAAAPPALDIFGDLFDSAPEVAAAPKPD----A 240 250 260 270 280 290 460 470 480 490 500 mKIAA1 APTPTQASTPAPTEPP---SPVPTP--TPALVQTEGPANPGASSGPRRLSTPNLMCNPDK ::. .: : . :: :::: : :..... : :. .: mKIAA0 APSIDLFGTDAFSSPPRGASPVPESSLTADLLSVDAFAAPSPASTASPAKAESSGVIDLF 300 310 320 330 340 350 510 520 530 mKIAA1 PDAPAFHSSTLERKTPIQILGQEPDAEMVEYLI mKIAA0 GDAFGSGASETQPAPQAVSSSSASADLLAGFGGSFMAPSTTPVTPAQNNLLQPSFEAAFG 360 370 380 390 400 410 >>mKIAA0845 ( 1046 res) mbh00862 (1046 aa) initn: 854 init1: 212 opt: 294 Z-score: 144.6 bits: 37.4 E(): 0.0065 Smith-Waterman score: 329; 24.819% identity (27.789% ungapped) in 552 aa overlap (10-530:281-804) 10 20 30 mKIAA1 ALVQLQAACEKREQLE-HRLRTRLERELESLRIQ-QRQG : : ::: : ... :. : : .:.. .: . mKIAA0 GQIQGCGAAQAQAQAEARDALKCDVTSALREIRAQLEGHAVQSTLQSE-EWFRVRLDRLS 260 270 280 290 300 40 50 60 70 80 90 mKIAA1 NSQPTNASEYNAA--ALMELLREKEERILALEADMTKWE--QKYLEENVMRHFALDAAAT .. .:.. . .: . : :. . : ::: . : .. : :: : mKIAA0 EAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTKESLERQRSELEDRH-----QAD 310 320 330 340 350 360 100 110 120 130 140 mKIAA1 VAAQRDTTVISHSPNTSYDTALEARIQKEEEEILMANKRCLD---------MEG---RIK .:. .:. :.. . .: : : .: . :. : :: .:: :: mKIAA0 IASYQDA--IQQLDSELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECRIG 370 380 390 400 410 420 150 160 170 180 190 200 mKIAA1 TLHAQIIEKDAMIKVLQQRSRKEPSKTEQLSSMRPAKSLMSISNAGSGLLAHSSTLTGAP . . ... :. . .. . .. :... .. ... : . : . . : mKIAA0 FGPSPFSLTEGLPKIPSISTHIKVKSEEMIKVVEKSEKETVIVE---GQTEEIRVTEG-- 430 440 450 460 470 210 220 230 240 250 260 mKIAA1 IMEEKRDDKSWKGSLGVLLGGDYRVEPVPSTPSPVPPSTPLLSAHSKTGSRDCSTQTERG . :: .:: .:. : . : .. . ::. : ...: :: . .. mKIAA0 VTEE--EDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPEKETKSR--VKEEAKS 480 490 500 510 520 530 270 280 290 300 310 320 mKIAA1 PESTKTAAVTPISAPMAGPVAAAAPAAAINATAATNTATAATNTTIMVAAAPVAVAAVAA : .:. : : .: : .:: : . : . . : . . : : . : . . mKIAA0 PGEAKS----PGEAK--SPGEAKSPAEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKS 540 550 560 570 580 330 340 350 360 370 mKIAA1 PAAA---AATPSPANAAALAAAAAPATSVSAATSVSAANSISPAAPVAPAAVVPPAAPVS :: : :.. ::..: . . : .:: . : : . : :.. ::: .:. . :: : : mKIAA0 PAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKS 590 600 610 620 630 640 380 390 400 410 420 mKIAA1 PAAA-----VQIPAAASLTPATV-SPTAATATAAV----AAATTAAITAAAAAATTAIQV :: : :. :: :. .:: : :: : . ::: : . ::. . . : . . mKIAA0 PAEAKSPAEVKSPAEAK-SPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAK 650 660 670 680 690 700 430 440 450 460 470 480 mKIAA1 APATSAPVPSPASIPAPATAQASAPTPTQASTPAPTEPPSPVPTPTPALVQTEGPANPGA .:: : :. :. : . . .: ::.. .. .:.: :: . .:. . . ::. mKIAA0 SPAE-AKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAE--- 710 720 730 740 750 760 490 500 510 520 530 mKIAA1 SSGPRRLSTPNLMCNPDKPDAPAFHSSTLERKTPIQILGQEPDAEMVEYLI ...:.. ..: : . .. : .::.: ...: mKIAA0 AKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAK 770 780 790 800 810 820 mKIAA0 SPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPK 830 840 850 860 870 880 >>mKIAA0975 ( 1480 res) mbg09869 (1480 aa) initn: 349 init1: 193 opt: 297 Z-score: 143.9 bits: 37.8 E(): 0.0072 Smith-Waterman score: 306; 35.124% identity (38.636% ungapped) in 242 aa overlap (281-518:905-1128) 260 270 280 290 300 310 mKIAA1 SRDCSTQTERGPESTKTAAVTPISAPMAGPVAAAAPAAAINATAATNTATAATNTTIMVA : . :.: : . :.: : mKIAA0 TAIFVLPHEKFHFLRVYNQLRASLQDLKTVVISKNPSAKPRNQPAKSRASAEQRLQETPA 880 890 900 910 920 930 320 330 340 350 360 370 mKIAA1 AAPVAVAAVAAPAAAAATPSPANAAALAAAAAPATSVSAATSVSAANSISPAAPVAPAAV :: : .:.: .:.: :: : ::: ::. . . ....:.. ::: ::::. mKIAA0 DAP---APAAVPPTASA---PAPAEALAPDLAPVQAPGEDRGLTSAEA--PAAAEAPAAA 940 950 960 970 980 380 390 400 410 420 430 mKIAA1 VPPAAPVSPAAAVQIPAAASLTPATVSPTAATATAAVAAATTAAITAAAAAATTAIQVAP ::: .:::: . :::: .:.:: : : . : :: : ::: . : :: mKIAA0 EAPAAAEAPAAA-EAPAAAE------APAAAEAPAPAEAP--AAAEAPAAAEAPAAAEAP 990 1000 1010 1020 1030 440 450 460 470 480 mKIAA1 ATSAPVPSPASIPAPATAQASAPTPTQASTPAPTEPPS----PVPTPTPALVQTEGPANP : :: .:.: . :::: . : : :. :. :::.: . :. :. :.:. . : mKIAA0 A-SAEAPAPNQAPAPARGPAPARGPAPAGGPAPAEALAQAEVPAQYPSERLIQSTSEENQ 1040 1050 1060 1070 1080 1090 490 500 510 520 530 mKIAA1 GASSGPRRLSTPNLMCNPDKPDAPAFHSSTLERKTPIQILGQEPDAEMVEYLI : : : .. . ::.: : mKIAA0 IPSHLPVCPSLQHIARLRGRAIIDLFHNSIAEVENEELRHLLWSSVVFYQTPGLEVTACV 1100 1110 1120 1130 1140 1150 mKIAA0 LLSSKAVYFILHDGLRRYFSEPLQDFWHQKNTDYNNSPFHVSQCFVLKLSDLQSVNVGLF 1160 1170 1180 1190 1200 1210 539 residues in 1 query sequences 1768478 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:35:21 2006 done: Mon Mar 27 10:35:22 2006 Scan time: 0.750 Display time: 0.140 Function used was FASTA [version 3.4t11 Apr 17, 2002]