# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpm04328.fasta.nr -Q ../query/mKIAA0765.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
mKIAA0765, 569 aa
vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library
2727779818 residues in 7921681 sequences
statistics sampled from 60000 to 7876455 sequences
Expectation_n fit: rho(ln(x))= 7.0741+/-0.000216; mu= 3.9224+/- 0.012
mean_var=182.8511+/-35.108, 0's: 26 Z-trim: 146 B-trim: 182 in 2/63
Lambda= 0.094847
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 37, opt: 25, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7921681)
gi|19070198|gb|AAL83754.1| SWAN [Mus musculus] (1003) 3794 531.9 3.5e-148
gi|30173327|sp|Q8R4X3.2|RBM12_MOUSE RecName: Full= (1002) 3788 531.1 6.2e-148
gi|148674224|gb|EDL06171.1| mCG5227, isoform CRA_a ( 773) 3782 530.1 9.1e-148
gi|74184867|dbj|BAE39056.1| unnamed protein produc ( 914) 3782 530.2 1e-147
gi|26348755|dbj|BAC38017.1| unnamed protein produc ( 992) 3782 530.2 1.1e-147
gi|26330362|dbj|BAC28911.1| unnamed protein produc ( 992) 3782 530.2 1.1e-147
gi|31324614|gb|AAP48569.1| swan [Rattus norvegicus (1032) 3742 524.8 4.9e-146
gi|194672612|ref|XP_001790603.1| PREDICTED: simila ( 931) 3666 514.3 6.2e-143
gi|30173387|sp|Q9NTZ6.1|RBM12_HUMAN RecName: Full= ( 932) 3664 514.1 7.5e-143
gi|50949507|emb|CAH10603.1| hypothetical protein [ ( 954) 3664 514.1 7.6e-143
gi|12053991|emb|CAC20441.1| RNA binding motif prot ( 932) 3661 513.7 1e-142
gi|194044523|ref|XP_001924336.1| PREDICTED: simila ( 933) 3661 513.7 1e-142
gi|166831595|gb|ABY90120.1| RNA binding motif prot (1460) 3661 513.9 1.3e-142
gi|194224364|ref|XP_001499378.2| PREDICTED: simila (1419) 3659 513.6 1.6e-142
gi|30173333|sp|Q8SQ27.1|RBM12_MACMU RecName: Full= ( 932) 3656 513.0 1.6e-142
gi|75070796|sp|Q5RBM8.1|RBM12_PONAB RecName: Full= ( 932) 3654 512.7 1.9e-142
gi|164623749|gb|ABY64675.1| RNA binding motif prot (1466) 3656 513.2 2.2e-142
gi|217038336|gb|ACJ76629.1| RNA binding motif prot ( 940) 3650 512.1 2.8e-142
gi|190402267|gb|ACE77677.1| RNA binding motif prot (1520) 3651 512.5 3.6e-142
gi|169731516|gb|ACA64888.1| RNA binding motif prot (1465) 3638 510.7 1.2e-141
gi|184185561|gb|ACC68959.1| RNA-binding protein 12 ( 946) 3619 507.9 5.4e-141
gi|211830818|gb|AAH26891.2| Rbm12 protein [Mus mus ( 887) 3618 507.7 5.7e-141
gi|197215644|gb|ACH53036.1| RNA binding motif prot (1475) 3618 508.0 8e-141
gi|26325168|dbj|BAC26338.1| unnamed protein produc ( 841) 3355 471.7 3.7e-130
gi|37932175|gb|AAP69823.1| SWAN ribonucleoprotein ( 887) 3307 465.2 3.7e-128
gi|194387896|dbj|BAG61361.1| unnamed protein produ ( 731) 2927 413.1 1.5e-112
gi|37932182|gb|AAP69824.1| SWAN ribonucleoprotein ( 877) 2451 348.0 6.7e-93
gi|37589430|gb|AAH59291.1| Rbm12-prov protein [Xen ( 877) 2448 347.6 8.9e-93
gi|21740240|emb|CAD39131.1| hypothetical protein [ ( 663) 2442 346.7 1.3e-92
gi|31324618|gb|AAP48571.1| swan [Danio rerio] ( 876) 2093 299.1 3.7e-78
gi|193786713|dbj|BAG52036.1| unnamed protein produ ( 568) 1819 261.4 5.4e-67
gi|31324616|gb|AAP48570.1| swan [Takifugu rubripes ( 889) 1617 233.9 1.5e-58
gi|220941557|emb|CAX15735.1| RNA binding motif pro ( 288) 1393 202.7 1.2e-49
gi|56203440|emb|CAI20134.1| RNA binding motif prot ( 291) 1359 198.1 3e-48
gi|47211266|emb|CAF91568.1| unnamed protein produc ( 823) 1267 186.0 3.8e-44
gi|159163272|pdb|1WEL|A Chain A, Solution Structur ( 124) 750 114.4 2.1e-23
gi|149755686|ref|XP_001488043.1| PREDICTED: RNA bi ( 976) 696 108.0 1.4e-20
gi|119612105|gb|EAW91699.1| RNA binding motif prot ( 707) 689 106.8 2.2e-20
gi|75071008|sp|Q5RFT7.1|RB12B_PONAB RecName: Full= ( 761) 689 106.9 2.3e-20
gi|215273872|sp|Q8IXT5.2|RB12B_HUMAN RecName: Full (1001) 689 107.0 2.8e-20
gi|73999587|ref|XP_544177.2| PREDICTED: similar to ( 814) 685 106.4 3.5e-20
gi|12851402|dbj|BAB29027.1| unnamed protein produc ( 723) 678 105.3 6.3e-20
gi|148673677|gb|EDL05624.1| mCG123728, isoform CRA ( 834) 678 105.4 6.9e-20
gi|187953621|gb|AAI37621.1| C430048L16Rik protein ( 834) 678 105.4 6.9e-20
gi|26348891|dbj|BAC38085.1| unnamed protein produc ( 834) 678 105.4 6.9e-20
gi|124020998|sp|Q80YR9.2|R12BA_MOUSE RecName: Full ( 836) 678 105.4 7e-20
gi|29747798|gb|AAH50844.1| RNA binding motif prote ( 836) 678 105.4 7e-20
gi|81910709|sp|Q66JV4.1|R12BB_MOUSE RecName: Full= ( 834) 674 104.9 1e-19
gi|62648675|ref|XP_232819.3| PREDICTED: similar to ( 843) 671 104.5 1.4e-19
gi|109476157|ref|XP_001054639.1| PREDICTED: simila ( 843) 671 104.5 1.4e-19
>>gi|19070198|gb|AAL83754.1| SWAN [Mus musculus] gi| (1003 aa)
initn: 3794 init1: 3794 opt: 3794 Z-score: 2816.7 bits: 531.9 E(): 3.5e-148
Smith-Waterman score: 3794; 100.000% identity (100.000% similar) in 555 aa overlap (1-555:90-644)
10 20 30
mKIAA0 FETANLDIPPANASRSGPPPSSGMSSRVNL
::::::::::::::::::::::::::::::
gi|190 TGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNL
60 70 80 90 100 110
40 50 60 70 80 90
mKIAA0 PATVPNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|190 PATVPNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTA
120 130 140 150 160 170
100 110 120 130 140 150
mKIAA0 SPMNTVPPPPIPPIPAMPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|190 SPMNTVPPPPIPPIPAMPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLP
180 190 200 210 220 230
160 170 180 190 200 210
mKIAA0 PMSGMPPLNPPPVAPLPAGMNGSGAPIGLNNNMNPVFLGPLNPVNSIQMNSQSSVKSLPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|190 PMSGMPPLNPPPVAPLPAGMNGSGAPIGLNNNMNPVFLGPLNPVNSIQMNSQSSVKSLPI
240 250 260 270 280 290
220 230 240 250 260 270
mKIAA0 NPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|190 NPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
300 310 320 330 340 350
280 290 300 310 320 330
mKIAA0 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|190 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKR
360 370 380 390 400 410
340 350 360 370 380 390
mKIAA0 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|190 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
420 430 440 450 460 470
400 410 420 430 440 450
mKIAA0 NDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|190 NDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEV
480 490 500 510 520 530
460 470 480 490 500 510
mKIAA0 SSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|190 SSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAH
540 550 560 570 580 590
520 530 540 550 560
mKIAA0 KSEHLHRKKLNGREAFVHIVTLEDMREIEKNPPAQGKKGLKISVPDGSLRDLGPALRVL
:::::::::::::::::::::::::::::::::::::::::::::
gi|190 KSEHLHRKKLNGREAFVHIVTLEDMREIEKNPPAQGKKGLKISVPGNPAVPVIPSAGMPA
600 610 620 630 640 650
gi|190 AGIPTAGIPGAGLPSAGMPGAGMPSSGMPGPGMPGPGIPGAGIPGPAMPGPAMPGPAMPG
660 670 680 690 700 710
>>gi|30173327|sp|Q8R4X3.2|RBM12_MOUSE RecName: Full=RNA- (1002 aa)
initn: 3788 init1: 3788 opt: 3788 Z-score: 2812.3 bits: 531.1 E(): 6.2e-148
Smith-Waterman score: 3788; 99.820% identity (99.820% similar) in 555 aa overlap (1-555:90-644)
10 20 30
mKIAA0 FETANLDIPPANASRSGPPPSSGMSSRVNL
::::::::::::::::::::::::::::::
gi|301 TGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNL
60 70 80 90 100 110
40 50 60 70 80 90
mKIAA0 PATVPNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTA
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|301 PAIVPNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTA
120 130 140 150 160 170
100 110 120 130 140 150
mKIAA0 SPMNTVPPPPIPPIPAMPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|301 SPMNTVPPPPIPPIPAMPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLP
180 190 200 210 220 230
160 170 180 190 200 210
mKIAA0 PMSGMPPLNPPPVAPLPAGMNGSGAPIGLNNNMNPVFLGPLNPVNSIQMNSQSSVKSLPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|301 PMSGMPPLNPPPVAPLPAGMNGSGAPIGLNNNMNPVFLGPLNPVNSIQMNSQSSVKSLPI
240 250 260 270 280 290
220 230 240 250 260 270
mKIAA0 NPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|301 NPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
300 310 320 330 340 350
280 290 300 310 320 330
mKIAA0 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|301 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKR
360 370 380 390 400 410
340 350 360 370 380 390
mKIAA0 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|301 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
420 430 440 450 460 470
400 410 420 430 440 450
mKIAA0 NDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|301 NDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEV
480 490 500 510 520 530
460 470 480 490 500 510
mKIAA0 SSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|301 SSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAH
540 550 560 570 580 590
520 530 540 550 560
mKIAA0 KSEHLHRKKLNGREAFVHIVTLEDMREIEKNPPAQGKKGLKISVPDGSLRDLGPALRVL
:::::::::::::::::::::::::::::::::::::::::::::
gi|301 KSEHLHRKKLNGREAFVHIVTLEDMREIEKNPPAQGKKGLKISVPGNPAVPVIPSAGMPA
600 610 620 630 640 650
gi|301 AGIPTAGIPGAGLPSAGMPGAGMPSSGMPGPGMPGPGIPGAGIPGPAMPGPAMPGPAMPG
660 670 680 690 700 710
>>gi|148674224|gb|EDL06171.1| mCG5227, isoform CRA_a [Mu (773 aa)
initn: 3782 init1: 3782 opt: 3782 Z-score: 2809.2 bits: 530.1 E(): 9.1e-148
Smith-Waterman score: 3782; 99.640% identity (99.820% similar) in 555 aa overlap (1-555:90-644)
10 20 30
mKIAA0 FETANLDIPPANASRSGPPPSSGMSSRVNL
::::::::::::::::::::::::::::::
gi|148 TGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNL
60 70 80 90 100 110
40 50 60 70 80 90
mKIAA0 PATVPNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTA
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 PAIVPNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTA
120 130 140 150 160 170
100 110 120 130 140 150
mKIAA0 SPMNTVPPPPIPPIPAMPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 SPMNTVPPPPIPPIPAMPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLP
180 190 200 210 220 230
160 170 180 190 200 210
mKIAA0 PMSGMPPLNPPPVAPLPAGMNGSGAPIGLNNNMNPVFLGPLNPVNSIQMNSQSSVKSLPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 PMSGMPPLNPPPVAPLPAGMNGSGAPIGLNNNMNPVFLGPLNPVNSIQMNSQSSVKSLPI
240 250 260 270 280 290
220 230 240 250 260 270
mKIAA0 NPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 NPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
300 310 320 330 340 350
280 290 300 310 320 330
mKIAA0 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKR
360 370 380 390 400 410
340 350 360 370 380 390
mKIAA0 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
420 430 440 450 460 470
400 410 420 430 440 450
mKIAA0 NDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 NDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEV
480 490 500 510 520 530
460 470 480 490 500 510
mKIAA0 SSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAH
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
gi|148 SSAKVCAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAH
540 550 560 570 580 590
520 530 540 550 560
mKIAA0 KSEHLHRKKLNGREAFVHIVTLEDMREIEKNPPAQGKKGLKISVPDGSLRDLGPALRVL
:::::::::::::::::::::::::::::::::::::::::::::
gi|148 KSEHLHRKKLNGREAFVHIVTLEDMREIEKNPPAQGKKGLKISVPGNPAVPVIPSAGMPA
600 610 620 630 640 650
gi|148 AGIPTAGIPGAGLPSAGMPGAGMPSSGMPGPGMPGPGIPGAGIPGPAMPGPAMPGPAMPG
660 670 680 690 700 710
>>gi|74184867|dbj|BAE39056.1| unnamed protein product [M (914 aa)
initn: 3782 init1: 3782 opt: 3782 Z-score: 2808.3 bits: 530.2 E(): 1e-147
Smith-Waterman score: 3782; 99.640% identity (99.820% similar) in 555 aa overlap (1-555:12-566)
10 20 30 40
mKIAA0 FETANLDIPPANASRSGPPPSSGMSSRVNLPATVPNFNNPSPSVVTATT
:::::::::::::::::::::::::::::::: ::::::::::::::::
gi|741 MQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNLPAIVPNFNNPSPSVVTATT
10 20 30 40 50 60
50 60 70 80 90 100
mKIAA0 SVHESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTASPMNTVPPPPIPPIPAMPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 SVHESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTASPMNTVPPPPIPPIPAMPS
70 80 90 100 110 120
110 120 130 140 150 160
mKIAA0 LPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLPPMSGMPPLNPPPVAPLPAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 LPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLPPMSGMPPLNPPPVAPLPAG
130 140 150 160 170 180
170 180 190 200 210 220
mKIAA0 MNGSGAPIGLNNNMNPVFLGPLNPVNSIQMNSQSSVKSLPINPDDLYVSVHGMPFSAMEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 MNGSGAPIGLNNNMNPVFLGPLNPVNSIQMNSQSSVKSLPINPDDLYVSVHGMPFSAMEN
190 200 210 220 230 240
230 240 250 260 270 280
mKIAA0 DVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 DVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT
250 260 270 280 290 300
290 300 310 320 330 340
mKIAA0 ERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 ERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLP
310 320 330 340 350 360
350 360 370 380 390 400
mKIAA0 FEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 FEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNR
370 380 390 400 410 420
410 420 430 440 450 460
mKIAA0 FIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEVSSAKVCAHITNIPFSITKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 FIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEVSSAKVCAHITNIPFSITKM
430 440 450 460 470 480
470 480 490 500 510 520
mKIAA0 DVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHI
:::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
gi|741 DVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHI
490 500 510 520 530 540
530 540 550 560
mKIAA0 VTLEDMREIEKNPPAQGKKGLKISVPDGSLRDLGPALRVL
::::::::::::::::::::::::::
gi|741 VTLEDMREIEKNPPAQGKKGLKISVPGNPAVPVIPSAGMPAAGIPTAGIPGAGLPSAGMP
550 560 570 580 590 600
>>gi|26348755|dbj|BAC38017.1| unnamed protein product [M (992 aa)
initn: 3782 init1: 3782 opt: 3782 Z-score: 2807.9 bits: 530.2 E(): 1.1e-147
Smith-Waterman score: 3782; 99.640% identity (99.820% similar) in 555 aa overlap (1-555:90-644)
10 20 30
mKIAA0 FETANLDIPPANASRSGPPPSSGMSSRVNL
::::::::::::::::::::::::::::::
gi|263 TGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNL
60 70 80 90 100 110
40 50 60 70 80 90
mKIAA0 PATVPNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTA
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 PAIVPNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTA
120 130 140 150 160 170
100 110 120 130 140 150
mKIAA0 SPMNTVPPPPIPPIPAMPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 SPMNTVPPPPIPPIPAMPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLP
180 190 200 210 220 230
160 170 180 190 200 210
mKIAA0 PMSGMPPLNPPPVAPLPAGMNGSGAPIGLNNNMNPVFLGPLNPVNSIQMNSQSSVKSLPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 PMSGMPPLNPPPVAPLPAGMNGSGAPIGLNNNMNPVFLGPLNPVNSIQMNSQSSVKSLPI
240 250 260 270 280 290
220 230 240 250 260 270
mKIAA0 NPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 NPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
300 310 320 330 340 350
280 290 300 310 320 330
mKIAA0 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKR
360 370 380 390 400 410
340 350 360 370 380 390
mKIAA0 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
420 430 440 450 460 470
400 410 420 430 440 450
mKIAA0 NDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 NDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEV
480 490 500 510 520 530
460 470 480 490 500 510
mKIAA0 SSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAH
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
gi|263 SSAKVCAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAH
540 550 560 570 580 590
520 530 540 550 560
mKIAA0 KSEHLHRKKLNGREAFVHIVTLEDMREIEKNPPAQGKKGLKISVPDGSLRDLGPALRVL
:::::::::::::::::::::::::::::::::::::::::::::
gi|263 KSEHLHRKKLNGREAFVHIVTLEDMREIEKNPPAQGKKGLKISVPGNPAVPVIPSAGMPA
600 610 620 630 640 650
gi|263 AGIPTAGIPGAGLPSAGMPGAGMPSSGMPGPGMPGPGIPGAGIPGPAMPGPAMPGPAMPG
660 670 680 690 700 710
>>gi|26330362|dbj|BAC28911.1| unnamed protein product [M (992 aa)
initn: 3782 init1: 3782 opt: 3782 Z-score: 2807.9 bits: 530.2 E(): 1.1e-147
Smith-Waterman score: 3782; 99.640% identity (99.820% similar) in 555 aa overlap (1-555:90-644)
10 20 30
mKIAA0 FETANLDIPPANASRSGPPPSSGMSSRVNL
::::::::::::::::::::::::::::::
gi|263 TGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNL
60 70 80 90 100 110
40 50 60 70 80 90
mKIAA0 PATVPNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTA
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 PAIVPNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTA
120 130 140 150 160 170
100 110 120 130 140 150
mKIAA0 SPMNTVPPPPIPPIPAMPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 SPMNTVPPPPIPPIPAMPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLP
180 190 200 210 220 230
160 170 180 190 200 210
mKIAA0 PMSGMPPLNPPPVAPLPAGMNGSGAPIGLNNNMNPVFLGPLNPVNSIQMNSQSSVKSLPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 PMSGMPPLNPPPVAPLPAGMNGSGAPIGLNNNMNPVFLGPLNPVNSIQMNSQSSVKSLPI
240 250 260 270 280 290
220 230 240 250 260 270
mKIAA0 NPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 NPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
300 310 320 330 340 350
280 290 300 310 320 330
mKIAA0 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKR
360 370 380 390 400 410
340 350 360 370 380 390
mKIAA0 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
420 430 440 450 460 470
400 410 420 430 440 450
mKIAA0 NDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 NDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEV
480 490 500 510 520 530
460 470 480 490 500 510
mKIAA0 SSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAH
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
gi|263 SSAKVCAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAH
540 550 560 570 580 590
520 530 540 550 560
mKIAA0 KSEHLHRKKLNGREAFVHIVTLEDMREIEKNPPAQGKKGLKISVPDGSLRDLGPALRVL
:::::::::::::::::::::::::::::::::::::::::::::
gi|263 KSEHLHRKKLNGREAFVHIVTLEDMREIEKNPPAQGKKGLKISVPGNPAVPVIPSAGMPA
600 610 620 630 640 650
gi|263 AGIPTAGIPGAGLPSAGMPGAGMPSSGMPGPGMPGPGIPGAGIPGPAMPGPAMPGPAMPS
660 670 680 690 700 710
>>gi|31324614|gb|AAP48569.1| swan [Rattus norvegicus] (1032 aa)
initn: 3742 init1: 3742 opt: 3742 Z-score: 2778.1 bits: 524.8 E(): 4.9e-146
Smith-Waterman score: 3742; 98.198% identity (99.640% similar) in 555 aa overlap (1-555:90-644)
10 20 30
mKIAA0 FETANLDIPPANASRSGPPPSSGMSSRVNL
::::::::::::::::::::::::::::::
gi|313 TGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNL
60 70 80 90 100 110
40 50 60 70 80 90
mKIAA0 PATVPNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTA
:::::.::::::::::::::::::::.:::::::::::::::::::::::::::::::::
gi|313 PATVPSFNNPSPSVVTATTSVHESNKSIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTA
120 130 140 150 160 170
100 110 120 130 140 150
mKIAA0 SPMNTVPPPPIPPIPAMPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLP
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
gi|313 SPMNTVPPPPIPPIPSMPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLP
180 190 200 210 220 230
160 170 180 190 200 210
mKIAA0 PMSGMPPLNPPPVAPLPAGMNGSGAPIGLNNNMNPVFLGPLNPVNSIQMNSQSSVKSLPI
:.:::::::::::::::.:::::::::.::::.:::::::::::: ::::::::::::::
gi|313 PISGMPPLNPPPVAPLPTGMNGSGAPISLNNNLNPVFLGPLNPVNPIQMNSQSSVKSLPI
240 250 260 270 280 290
220 230 240 250 260 270
mKIAA0 NPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|313 NPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
300 310 320 330 340 350
280 290 300 310 320 330
mKIAA0 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|313 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKR
360 370 380 390 400 410
340 350 360 370 380 390
mKIAA0 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|313 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
420 430 440 450 460 470
400 410 420 430 440 450
mKIAA0 NDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEV
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
gi|313 NDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMVLNPEGEV
480 490 500 510 520 530
460 470 480 490 500 510
mKIAA0 SSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|313 SSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAH
540 550 560 570 580 590
520 530 540 550 560
mKIAA0 KSEHLHRKKLNGREAFVHIVTLEDMREIEKNPPAQGKKGLKISVPDGSLRDLGPALRVL
:::::::::::::::::::::::::::::::::::::::::: ::
gi|313 KSEHLHRKKLNGREAFVHIVTLEDMREIEKNPPAQGKKGLKIPVPGNPAVPVIPSAGMPA
600 610 620 630 640 650
gi|313 AGIPSAGIPSAGIPSAGMPSAGMPSAGLPAAGLPAAGLPGSGMPGSGMPGSGIPGPGIPG
660 670 680 690 700 710
>>gi|194672612|ref|XP_001790603.1| PREDICTED: similar to (931 aa)
initn: 3666 init1: 3666 opt: 3666 Z-score: 2722.4 bits: 514.3 E(): 6.2e-143
Smith-Waterman score: 3666; 94.595% identity (99.279% similar) in 555 aa overlap (1-555:90-644)
10 20 30
mKIAA0 FETANLDIPPANASRSGPPPSSGMSSRVNL
:::::::::::::::::::::::::.::::
gi|194 TGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSGRVNL
60 70 80 90 100 110
40 50 60 70 80 90
mKIAA0 PATVPNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTA
:.::::::::::::::::::::::.::::::::::.:::::.::.::::::::::.::::
gi|194 PTTVPNFNNPSPSVVTATTSVHESSKNIQTFSTASIGTAPPNMGASFGSPTFSSTVPSTA
120 130 140 150 160 170
100 110 120 130 140 150
mKIAA0 SPMNTVPPPPIPPIPAMPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLP
::::::::::::::::::::::.::::::::::::::.::::::::::::::::::: ::
gi|194 SPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTMPPVPPVPPIPPVPSVPPMTPLP
180 190 200 210 220 230
160 170 180 190 200 210
mKIAA0 PMSGMPPLNPPPVAPLPAGMNGSGAPIGLNNNMNPVFLGPLNPVNSIQMNSQSSVKSLPI
::::::::::::::::::::::::::..::::.:::::::::::: .::::::::: :::
gi|194 PMSGMPPLNPPPVAPLPAGMNGSGAPVNLNNNLNPVFLGPLNPVNPVQMNSQSSVKPLPI
240 250 260 270 280 290
220 230 240 250 260 270
mKIAA0 NPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
gi|194 NPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
300 310 320 330 340 350
280 290 300 310 320 330
mKIAA0 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKR
:::::::::::::::::::::::::::::::::::.:::::.::::: ::::::::::::
gi|194 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQPLPRSKSPSGQKR
360 370 380 390 400 410
340 350 360 370 380 390
mKIAA0 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
420 430 440 450 460 470
400 410 420 430 440 450
mKIAA0 NDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEV
:.:::::::::::::::::::::::::::::::::::::::::::::::::..:::::.:
gi|194 NEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDV
480 490 500 510 520 530
460 470 480 490 500 510
mKIAA0 SSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAH
.:::::::::::::::::::::::::::::::::::::::::::::::::::::.::::.
gi|194 TSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDAR
540 550 560 570 580 590
520 530 540 550 560
mKIAA0 KSEHLHRKKLNGREAFVHIVTLEDMREIEKNPPAQGKKGLKISVPDGSLRDLGPALRVL
:::.::::::::::::::.::::::::::::::::::::::.:::
gi|194 KSERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMSVPGNPAVPGIPNVGMPN
600 610 620 630 640 650
gi|194 AGLPSSGMPSAGLPNAGMPNAGIPAAGMPNAGMPAAGMPNAGIPRGEEHAFLAVGSKEAN
660 670 680 690 700 710
>>gi|30173387|sp|Q9NTZ6.1|RBM12_HUMAN RecName: Full=RNA- (932 aa)
initn: 3664 init1: 3664 opt: 3664 Z-score: 2720.9 bits: 514.1 E(): 7.5e-143
Smith-Waterman score: 3664; 95.135% identity (99.099% similar) in 555 aa overlap (1-555:90-644)
10 20 30
mKIAA0 FETANLDIPPANASRSGPPPSSGMSSRVNL
::::::::::::::::::::::::::::::
gi|301 TGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNL
60 70 80 90 100 110
40 50 60 70 80 90
mKIAA0 PATVPNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTA
:.:: ::::::::::::::::::::::::::::::::::::.::.::::::::::.::::
gi|301 PTTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPNMGASFGSPTFSSTVPSTA
120 130 140 150 160 170
100 110 120 130 140 150
mKIAA0 SPMNTVPPPPIPPIPAMPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLP
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: ::
gi|301 SPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLP
180 190 200 210 220 230
160 170 180 190 200 210
mKIAA0 PMSGMPPLNPPPVAPLPAGMNGSGAPIGLNNNMNPVFLGPLNPVNSIQMNSQSSVKSLPI
::::::::::::::::::::::::::..::::.::.::::::::: :::::::::: :::
gi|301 PMSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSSVKPLPI
240 250 260 270 280 290
220 230 240 250 260 270
mKIAA0 NPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
gi|301 NPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
300 310 320 330 340 350
280 290 300 310 320 330
mKIAA0 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKR
::::::::::::::::::::::::::::::::::.::::::.::::::::::::::::::
gi|301 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKR
360 370 380 390 400 410
340 350 360 370 380 390
mKIAA0 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|301 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
420 430 440 450 460 470
400 410 420 430 440 450
mKIAA0 NDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEV
:.:::::::::::::::::::::::::::::::::::::::::::::::::..:::::.:
gi|301 NEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDV
480 490 500 510 520 530
460 470 480 490 500 510
mKIAA0 SSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAH
.:::::::::::::::::::::::::::::::::::::::::::::::::::::.::::.
gi|301 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDAR
540 550 560 570 580 590
520 530 540 550 560
mKIAA0 KSEHLHRKKLNGREAFVHIVTLEDMREIEKNPPAQGKKGLKISVPDGSLRDLGPALRVL
:::.::::::::::::::.::::::::::::::::::::::. ::
gi|301 KSERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPG
600 610 620 630 640 650
gi|301 VGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGP
660 670 680 690 700 710
>>gi|50949507|emb|CAH10603.1| hypothetical protein [Homo (954 aa)
initn: 3664 init1: 3664 opt: 3664 Z-score: 2720.8 bits: 514.1 E(): 7.6e-143
Smith-Waterman score: 3664; 95.135% identity (99.099% similar) in 555 aa overlap (1-555:112-666)
10 20 30
mKIAA0 FETANLDIPPANASRSGPPPSSGMSSRVNL
::::::::::::::::::::::::::::::
gi|509 TGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNL
90 100 110 120 130 140
40 50 60 70 80 90
mKIAA0 PATVPNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTA
:.:: ::::::::::::::::::::::::::::::::::::.::.::::::::::.::::
gi|509 PTTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPNMGASFGSPTFSSTVPSTA
150 160 170 180 190 200
100 110 120 130 140 150
mKIAA0 SPMNTVPPPPIPPIPAMPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLP
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: ::
gi|509 SPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLP
210 220 230 240 250 260
160 170 180 190 200 210
mKIAA0 PMSGMPPLNPPPVAPLPAGMNGSGAPIGLNNNMNPVFLGPLNPVNSIQMNSQSSVKSLPI
::::::::::::::::::::::::::..::::.::.::::::::: :::::::::: :::
gi|509 PMSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSSVKPLPI
270 280 290 300 310 320
220 230 240 250 260 270
mKIAA0 NPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
gi|509 NPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA
330 340 350 360 370 380
280 290 300 310 320 330
mKIAA0 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKR
::::::::::::::::::::::::::::::::::.::::::.::::::::::::::::::
gi|509 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKR
390 400 410 420 430 440
340 350 360 370 380 390
mKIAA0 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|509 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
450 460 470 480 490 500
400 410 420 430 440 450
mKIAA0 NDADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEV
:.:::::::::::::::::::::::::::::::::::::::::::::::::..:::::.:
gi|509 NEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDV
510 520 530 540 550 560
460 470 480 490 500 510
mKIAA0 SSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAH
.:::::::::::::::::::::::::::::::::::::::::::::::::::::.::::.
gi|509 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDAR
570 580 590 600 610 620
520 530 540 550 560
mKIAA0 KSEHLHRKKLNGREAFVHIVTLEDMREIEKNPPAQGKKGLKISVPDGSLRDLGPALRVL
:::.::::::::::::::.::::::::::::::::::::::. ::
gi|509 KSERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPG
630 640 650 660 670 680
gi|509 VGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGP
690 700 710 720 730 740
569 residues in 1 query sequences
2727779818 residues in 7921681 library sequences
Tcomplib [34.26] (2 proc)
start: Mon Mar 16 07:44:49 2009 done: Mon Mar 16 07:52:11 2009
Total Scan time: 984.920 Total Display time: 0.220
Function used was FASTA [version 34.26.5 April 26, 2007]