FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1236.ptfa, 1309 aa vs ./tmplib.26680 library 1767708 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 10.2738+/-0.00807; mu= -2.3348+/- 0.531 mean_var=481.7854+/-116.843, 0's: 0 Z-trim: 9 B-trim: 0 in 0/36 Lambda= 0.0584 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4231 ( 1467 res) mfj06028 (1467) 372 47 3.1e-05 >>mKIAA4231 ( 1467 res) mfj06028 (1467 aa) initn: 114 init1: 84 opt: 372 Z-score: 186.4 bits: 46.9 E(): 3.1e-05 Smith-Waterman score: 441; 25.577% identity (31.322% ungapped) in 954 aa overlap (279-1149:107-968) 250 260 270 280 290 300 mKIAA1 GPRDADHFRCSTFAELQERLECIDGSEAFPGPQG--GSDGAQASPARGGRKPSLP--EAT :::: :. : . :.:.: :.:: . mKIAA4 DCPNPEIPFGECCAICPQPSTPAPVLPDGHGPQGPKGDPGPPGIPGRNG-DPGLPGQPGL 80 90 100 110 120 130 310 320 330 340 350 360 mKIAA1 PSRKAVAPTVVTSCPRGSPGHDTHRSASDPSKTGTQSEQRVDG--SRPEPPASDKTSGGG :. . .: . ::: :. ... . .. : :.:. . : . : ::. .:: mKIAA4 PGPPG-SPGICESCPTGGQNYSPQFDSYD-VKSGVGGMGGYPGPAGPPGPPGPPGSSGHP 140 150 160 170 180 190 370 380 390 400 410 mKIAA1 GRRPLPSPAPPP--PRQPEAQGIPKEPGG------EGTDSVLRTPPVGMSGQAALP--PL : :. :: : : : : ::. : :. : : :. .:: : mKIAA4 GSPGSPGYQGPPGEPGQAGPAGPPGPPGALGPAGPAGKDGESGRP--GRPGERGLPGPPG 200 210 220 230 240 250 420 430 440 450 460 470 mKIAA1 LSDSAYLS--PSARGRHLERGLLTTTVTLQQPVELNGEDELVFTVVEELPLGGLAGATRP .. : . :. .:.. : : :.::. : : : :: : mKIAA4 IKGPAGMPGFPGMKGHRGFDGRNGEKGETGAP-GLKGENGL--------P--GDNGAPGP 260 270 280 290 300 480 490 500 510 520 mKIAA1 SSLASMSSDCSLQAL--ASGSRPVSIISSINDEFDAYTSQMSEG-PGDPGEFPEGTAWAG . . .. . .: :.:.: :: .. :.: :: :: : ::: mKIAA4 MGPRGAPGERGRPGLPGAAGARG-------ND-----GARGSDGQPGPPG--PPGTAGFP 310 320 330 340 530 540 550 560 570 580 mKIAA1 SSPASS--IGSWLSDVGVCLSESRGPTPQPPFSPNSAAGPGPP-EFPTPGSSLEESKVRS .::... .: : : : .. : : .. . :::: . .::.. : . . mKIAA4 GSPGAKGEVGPAGSP-GSNGSPGQRGEPGPQGHAGAQGPPGPPGNNGSPGGKGEMGPA-- 350 360 370 380 390 400 590 600 610 620 630 mKIAA1 SECGRPDNPG--SARSLHPGEA----VATTQT---QPGR-----EPWARSPHEVASVQTI : : :: .::. :: : . :. .::. :: ::. . :. : mKIAA4 ---GIPGAPGLIGARG-PPGPAGTNGIPGTRGPSGEPGKNGAKGEPGARGERGEAGSPGI 410 420 430 440 450 640 650 660 670 mKIAA1 --------HSSLPRKPRTTS---TASRARPS--RGPYSPGGL--FEDPWLLRAED--CDT ... : .: ... .:.. :: ::: .:.:. . : :. mKIAA4 PGPKGEDGKDGSPGEPGANGLPGAAGERGPSGFRGPAGPNGIPGEKGPPGERGGPGPAGP 460 470 480 490 500 510 680 690 700 710 720 730 mKIAA1 RQIAST-GRAPSPTPGSPRLPETQMMLACAQRVVDGCEVASRMSRRPEAVARIPPLRRGA : .:. :: . :::.: . : . : . . .: :: .: mKIAA4 RGVAGEPGR--DGTPGGPGI-----------RGMPGSPGGPGNDGKPG-----PPGSQGE 520 530 540 550 560 740 750 760 770 780 mKIAA1 TTLGVTTPAASCGDAPAEAVVHSGSLKNTSGSK----KSVSPKGAFFPRPSGA------- . : : . : .:. . :...:. . .: : .: :.: mKIAA4 S--GRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGLPGPAGKNGETGPQ 570 580 590 600 610 790 800 810 820 830 840 mKIAA1 GPPAPPVRKSSLEQSTALTPTQALGLTRAGAPSAFRGEEEARPSGRSDSSVPKATSSLKA :::.: .. .: : :. .:.: . :. ..:. ... ..: : . mKIAA4 GPPGPTGPAGDKGDSGPPGPQGLQGIPGTGGPPGENGKP-GEPGPKGEVGAPGAPG---- 620 630 640 650 660 670 850 860 870 880 890 900 mKIAA1 RAGKMDAPYRPSGHMSLERCEGLAHGSSKVRDVVGRPPRAVPRLGVPSASPPLGPAPACR :: : :: . . : : : .: .: :: :. : :.:: :: :. mKIAA4 --GKGD-----SGAPGERGPPGTA-GIPGARGGAG-PPG--PEGGKGPAGPP-GP-PGAS 680 690 700 710 720 910 920 930 940 950 mKIAA1 NSPA-KGVGATK--PPAGGAKGRNLGPSTSRALGAPVK--PLGPVAGKTAAGGAVPGPRA .::. .:. . . : . : ::.. :. . : :.: : : :: :: . ::: . mKIAA4 GSPGLQGMPGERGGPGSPGPKGEKGEPGGAGADGVPGKDGPRGP-AGPIGP----PGPAG 730 740 750 760 770 960 970 980 990 1000 1010 mKIAA1 APRAVPGIGAKAGRGTIMGTK--QAFRAAHSRVHELAASGSPSRGGLSWGSTDSDSGNDS : . : :.. : : : . . :. :. . :.:...: .. . . ... mKIAA4 QP-GDKGEGGSPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEK 780 790 800 810 820 830 1020 1030 1040 1050 1060 1070 mKIAA1 GVNLAEERQPSSPALPSPYSKVTAPRRPQRYSSGHGSDNSSVLSGELPPAMGRTALFYHS : : : .:: :. : ..: :: .. .:: .. .: .: . : . mKIAA4 G-----EGGPPGPAGPTGSSGPAGPPGPQGVKGERGSPGGPGTAG-FPGGRGLPG----P 840 850 860 870 880 1080 1090 1100 1110 1120 1130 mKIAA1 GGSSGYESMIRDSEATGSASSAPDSMSESGTAS----LGARSRSLKSPKKRATGLQRRRL :..: . : : :. .. : ..::. . : .. . . .: : : mKIAA4 PGNNGNPGPPGPSGAPGK-DGPPGPAGNSGSPGNPGIAGPKGDAGQPGEKGPPGAQGPPG 890 900 910 920 930 940 1140 1150 1160 1170 1180 mKIAA1 IPAPLPDAAALGRK-----PSLPGQWVDLPPPLAGSLKEPFEIKVYEIDDVERLQRHRLP :.:: :. : . :..:: mKIAA4 SPGPLGIAGLTGARGLAGPPGMPGPRGSPGPQGIKGESGKPGASGHNGERGPPGPQGLPG 950 960 970 980 990 1000 1309 residues in 1 query sequences 1767708 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:38:59 2006 done: Mon Mar 27 10:39:01 2006 Scan time: 1.230 Display time: 0.110 Function used was FASTA [version 3.4t11 Apr 17, 2002]