FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1083.ptfa, 614 aa
 vs ./tmplib.26680 library

1768403 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 9.1162+/-0.00704; mu= -2.8169+/- 0.467
 mean_var=261.2404+/-61.723, 0's: 0 Z-trim: 3  B-trim: 2 in 1/35
 Lambda= 0.0794

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4177  ( 796 res)   mbh01552                   ( 796)  232   40  0.0012


>>mKIAA4177  ( 796 res)   mbh01552                        (796 aa)
 initn: 289 init1: 173 opt: 232  Z-score: 157.6  bits: 39.6 E(): 0.0012
Smith-Waterman score: 232;  45.455% identity (47.059% ungapped) in 88 aa overlap (336-422:708-793)

         310       320       330       340       350       360     
mKIAA1 VRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQELAKQALQEIVILPSLRPEL
                                     .:.. :..: . .:. . : . ::  .:::
mKIAA4 GFPLLAEDFGQALDQLQTAHSQAVGAPRIPSVSWHDVGGLQDVKKEILETIQLPLEHPEL
       680       690       700       710       720       730       

          370       380       390       400       410       420    
mKIAA1 FT-GLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRAL
       .. :::    :::: ::::.:::.::::::.: . ::.....  : . :::..:. ::  
mKIAA4 LSLGLRRS--GLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREG
       740         750       760       770       780       790     

          430       440       450       460       470       480    
mKIAA1 FAVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGAT
                                                                   
mKIAA4 E                                                           
                                                                   




614 residues in 1 query   sequences
1768403 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:35:40 2006 done: Mon Mar 27 10:35:41 2006
 Scan time:  0.760 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]