FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1017.ptfa, 1096 aa
 vs ./tmplib.26680 library

1767921 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.0427+/-0.00491; mu= 17.0385+/- 0.329
 mean_var=104.9305+/-23.653, 0's: 0 Z-trim: 1  B-trim: 29 in 1/35
 Lambda= 0.1252

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0297  ( 1431 res)   mbf03436                  (1431)  352   75 7.3e-14


>>mKIAA0297  ( 1431 res)   mbf03436                       (1431 aa)
 initn: 214 init1:  76 opt: 352  Z-score: 341.2  bits: 75.3 E(): 7.3e-14
Smith-Waterman score: 384;  26.362% identity (30.612% ungapped) in 569 aa overlap (17-554:20-540)

                  10        20        30              40        50 
mKIAA1    MTFVPVIPEAYSHVLAEFESLDPLLTALRLDSSR------LRCTSIAVSRKWLALGS
                          ::  :  ::.:.    .:      .  :.. ..  ..:.::
mKIAA0 RTSVETLTMASVSDPVTFREFCPLYYLLNAIPTKIQRGFRSIVVYLTALDTNGDYIAVGS
               10        20        30        40        50        60

              60         70        80        90       100       110
mKIAA1 TGGGLNLIQKDGWKQRLF-LSHREGAISQIACCSHDDDYVAVATSQGLVVVWELNQERRG
       . : : :  .   ... . .. .  .:. .   :  :: ::..:..: :.:..: .   :
mKIAA0 SIGMLYLYCRHLNQMKKYNVDGKMESITVVKLLSCFDDLVAAGTASGRVAVFQLVSSLPG
               70        80        90       100       110       120

                 120       130       140       150       160       
mKIAA1 KPE---RIHVSSEHKGRKVTALCWDTAVLRVFVGDHVGKVSAIKLNTLKQAKAAAAFVMF
       . .   :. :.. ::  ..::: :.   ...: ::  ::.   .:. : :.  ..     
mKIAA0 RNKQLRRFDVTGVHK-TSITALAWSPNGMKLFSGDDKGKIVYSSLD-LDQGLCSS-----
              130        140       150       160        170        

       170       180       190              200          210       
mKIAA1 PVQTVLTVDSCVVQLDYLDGRLLVSSLTR-------EKFWK-IGNKERH--GEYGACFFP
         . ::   : .::::: .  ::::.: :       ::  : ::.. :.  :..::::.:
mKIAA0 --HLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKAVKQIGSQPRKSTGKFGACFIP
             180       190       200       210       220       230 

       220       230       240       250       260        270      
mKIAA1 GRCAGGQQPVIYCARPGSRMWEVNFDGEVLSTHQFKKLLSMPPLPV-ITARSEPQYDHT-
       : :  ..  ..: :::: :.:...  : : .:. .: ...    :  .  : ::.   . 
mKIAA0 GLCKQSDL-TLYAARPGLRLWKADVHGTVQATYILKDVFAGGVTPFELYPRLEPSDGGSC
              240       250       260       270       280       290

         280       290       300       310        320       330    
mKIAA1 VGSSQSLAFPKLLHLSEHCVLTWTEKGIYIFIPQNVQVLLWSE-VKDIQDVAVYKNELFC
       ..  . :.. . . . :  ::.:.: .::..   :  ..   : . :: .:.  .::.: 
mKIAA0 ISPEKHLGLVSCF-FREGWVLSWNEYSIYLLDTVNQATVAGLEGLGDIVSVSCTENEIFF
              300        310       320       330       340         

          340       350       360       370       380       390    
mKIAA1 LHFNGKISHLSLLSVERCVERLLRRGLWDLAARTCCLFQNSIITSRARKTLTADKLEHLK
       :. . .: ..:  :  . .  ..: ::      : :  :               . .::.
mKIAA0 LKGDRNIIRIS--SRPEGIASIVRDGL----EMTRCSEQV--------------HGQHLE
     350       360         370           380                       

          400       410       420       430        440        450  
mKIAA1 SQLDLTACSELISQLDDLILRFEPLESACSSRRSSISSHESFS-ILDSGIYRIIS-SRRG
       ..:  :.:    ..:    .    . :   :: ::..: .: : .:  :.      .. :
mKIAA0 KSLGATVCE---TRLRGSSVA-SSVASEQRSRSSSLNSTDSGSGLLLPGLQAASELGQSG
     390          400        410       420       430       440     

            460       470       480       490       500       510  
mKIAA1 SQSDEDSCSLHSQTFSEDERLKEFASHQEEEQPEQGCGANRNEESASHSPVMSEVDKSEA
       . :..    . :. :...  .: .  ......        :. :..:.:   : ....  
mKIAA0 QPSSQRFSVISSEDFDQELIVKPIKVKKRRRK--------RKTEGGSKSTCPSSLEST--
         450       460       470               480       490       

            520           530         540       550       560      
mKIAA1 FLPFSIALPFRSP----SPLVSL--QAVKDSVSSFVRKTTEKIGTLHGSPELKEHMKRKE
         : :  ::  ::    . :.:.  .:. .:....  .. :. ..: :            
mKIAA0 --PCS-ELPADSPQSLNTDLLSMTSSALGSSMDQLSTESPEQESNLGGEVNGISQENSGP
            500       510       520       530       540       550  

        570       580       590       600       610       620      
mKIAA1 KEIHQPPKEDRLQELTAATAEAMTKLLDPLVLFEPKVLRMVLLEWLSQLEKTFAMKDFPG
                                                                   
mKIAA0 EAFHVLELPGPAPGPASTPTDEENCTGKEASQCSHTQDTDLLSGVLTLPLQPEEDVGGAD
            560       570       580       590       600       610  




1096 residues in 1 query   sequences
1767921 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:34:05 2006 done: Mon Mar 27 10:34:06 2006
 Scan time:  1.080 Display time:  0.060

Function used was FASTA [version 3.4t11 Apr 17, 2002]