FASTA searches a protein or DNA sequence data bank
version 3.4t11 Apr 17, 2002
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
../query/mKIAA0625.ptfa, 778 aa
vs ./tmplib.26680 library
1768239 residues in 2168 sequences
Expectation_n fit: rho(ln(x))= 7.0985+/-0.00565; mu= 6.5532+/- 0.377
mean_var=170.5198+/-40.528, 0's: 0 Z-trim: 5 B-trim: 0 in 0/36
Lambda= 0.0982
FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 38, opt: 26, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2168)
mKIAA0054 ( 1617 res) mbg06166 (1617) 182 39 0.0069
>>mKIAA0054 ( 1617 res) mbg06166 (1617 aa)
initn: 293 init1: 71 opt: 182 Z-score: 144.2 bits: 38.5 E(): 0.0069
Smith-Waterman score: 226; 23.559% identity (28.367% ungapped) in 590 aa overlap (192-749:748-1269)
170 180 190 200 210 220
mKIAA0 LCRGGREMQRQELDEHIAIVSKERQELASKIKEVQGRPQRAQNTIILESHVICCTLSTSG
:. .:. : :. ::. .:. :::::
mKIAA0 AGNPQARPLRVYFRNRWVKTVHPVVHQYCLISSTQSTFQMPQKEDILKHRVVVVTLSTSQ
720 730 740 750 760 770
230 240 250 260 270
mKIAA0 GLL---LESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLI--HRCNKLILVGDPKQLPPT
: :: .: :. :..:::.:. : ::. :: . ....:.:: :: :
mKIAA0 YLCQLDLEPGF-------FTHVLLDEAAQAMECETIMPLALATKNTRIVLAGDHMQLSPF
780 790 800 810 820 830
280 290 300 310 320 330
mKIAA0 VISMKAQEYGYDQSMMARFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYN
: : :.: . :.. : : :. .. :. : .:: : : . :. :.
mKIAA0 VYSEFARERNLHVSLLDR----LYEHYPAEFPCRI---LLCENYRSHEAIINYTSELFYE
840 850 860 870 880
340 350 360 370 380 390
mKIAA0 KNLKTNRLTESIRCSSEWPFQPYLVFDV-GDGSERRDNDSYINVQEIKLVMEIIKLIKEK
..: : . .. : : : . :. ..... .. : :. :.: .. ...:
mKIAA0 -----GKLMASGKQPAHKDFYPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRK
890 900 910 920 930
400 410 420 430 440 450
mKIAA0 RK----DISFRNIGIITHYKAQKTMIQKDLEKEFDKKGLLQPIMMGESRQQDSEASKQQQ
.. .::..: : : :. .:.:. : .: .. . .
mKIAA0 WPVAWGKLDDGSIGVVTPYADQVFRIRAELRKK---------------RLSDVNVERVLN
940 950 960 970 980
460 470 480 490 500 510
mKIAA0 KSSEFMHASDELGSSTVTQSGISSLENGATHTGPAEVDTVDAFQGRQKDCIIVTCVRASA
... ... : ::: . :: . . ..:. .. . :.
mKIAA0 VQGKQFRV---LFLSTVR----------TRHTCKHKQTPI-----KKKEQLL----EDST
990 1000 1010 1020
520 530 540 550 560
mKIAA0 VQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLME----NQHWYELIQDAQKRGAI--I
. . :::.. . ::..::::. . ..: .: . : ..: .. .. :
mKIAA0 EDLDYGFLSNYKLLNTAITRAQSLVAVVGDPVALCSIGRCRKFWERFIALCHENHSLHGI
1030 1040 1050 1060 1070 1080
570 580 590 600 610 620
mKIAA0 KTSDPNYRHDAMKILKTH---P--PATAPEAPRPQGGLPSNRLDSGLATTSFAASLYHTP
. . . .:... ::. : : :.: : : . :.: .. . . ::::
mKIAA0 TFEQIKAQLEALELKKTYVLNPLAPEFIPRALRLQHSGNSSRQQQ---SPPKVKSLYHPQ
1090 1100 1110 1120 1130
630 640 650 660 670
mKIAA0 SDTVTSKGPERPLLQDRLRDPRLLRRLDAEAKG---TFLKDPQPVSPQLP--GVVHLLGE
:: : : .: . . .: . : .. :.:.::. : :. :
mKIAA0 SDHFQSDGIVQPNPSVLIGNP-IRAYTPPPPLGPHPNLGKSPSPVQRIDPHTGTSILY--
1140 1150 1160 1170 1180 1190
680 690 700 710 720
mKIAA0 PGFPVVFQDLGFVVPPSTAIVAPLGSHRSPMQAEPPP-AHPAAAAST-----SKRKYSDP
:.:. : : :. . .: .... . ..: .: :: : . .. . :
mKIAA0 --VPAVY---GGNVVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLHTHGRGSPI
1200 1210 1220 1230 1240 1250
730 740 750 760 770
mKIAA0 DAGLSHKREPRAFSGEQGRHGSVTHHVLRSTDWDRRRLDDSSAKRRQFL
::.:. : ... :..:.
mKIAA0 PYGLGHH-PPVSLGQPQSQHAEKDQQEQNRNGKTDTNNPGPEINKIRTPEKKPTEPKQVD
1260 1270 1280 1290 1300
778 residues in 1 query sequences
1768239 residues in 2168 library sequences
Scomplib [34t11]
start: Mon Mar 27 10:24:44 2006 done: Mon Mar 27 10:24:45 2006
Scan time: 0.860 Display time: 0.060
Function used was FASTA [version 3.4t11 Apr 17, 2002]