FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0625.ptfa, 778 aa vs ./tmplib.26680 library 1768239 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.0985+/-0.00565; mu= 6.5532+/- 0.377 mean_var=170.5198+/-40.528, 0's: 0 Z-trim: 5 B-trim: 0 in 0/36 Lambda= 0.0982 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0054 ( 1617 res) mbg06166 (1617) 182 39 0.0069 >>mKIAA0054 ( 1617 res) mbg06166 (1617 aa) initn: 293 init1: 71 opt: 182 Z-score: 144.2 bits: 38.5 E(): 0.0069 Smith-Waterman score: 226; 23.559% identity (28.367% ungapped) in 590 aa overlap (192-749:748-1269) 170 180 190 200 210 220 mKIAA0 LCRGGREMQRQELDEHIAIVSKERQELASKIKEVQGRPQRAQNTIILESHVICCTLSTSG :. .:. : :. ::. .:. ::::: mKIAA0 AGNPQARPLRVYFRNRWVKTVHPVVHQYCLISSTQSTFQMPQKEDILKHRVVVVTLSTSQ 720 730 740 750 760 770 230 240 250 260 270 mKIAA0 GLL---LESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLI--HRCNKLILVGDPKQLPPT : :: .: :. :..:::.:. : ::. :: . ....:.:: :: : mKIAA0 YLCQLDLEPGF-------FTHVLLDEAAQAMECETIMPLALATKNTRIVLAGDHMQLSPF 780 790 800 810 820 830 280 290 300 310 320 330 mKIAA0 VISMKAQEYGYDQSMMARFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYN : : :.: . :.. : : :. .. :. : .:: : : . :. :. mKIAA0 VYSEFARERNLHVSLLDR----LYEHYPAEFPCRI---LLCENYRSHEAIINYTSELFYE 840 850 860 870 880 340 350 360 370 380 390 mKIAA0 KNLKTNRLTESIRCSSEWPFQPYLVFDV-GDGSERRDNDSYINVQEIKLVMEIIKLIKEK ..: : . .. : : : . :. ..... .. : :. :.: .. ...: mKIAA0 -----GKLMASGKQPAHKDFYPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRK 890 900 910 920 930 400 410 420 430 440 450 mKIAA0 RK----DISFRNIGIITHYKAQKTMIQKDLEKEFDKKGLLQPIMMGESRQQDSEASKQQQ .. .::..: : : :. .:.:. : .: .. . . mKIAA0 WPVAWGKLDDGSIGVVTPYADQVFRIRAELRKK---------------RLSDVNVERVLN 940 950 960 970 980 460 470 480 490 500 510 mKIAA0 KSSEFMHASDELGSSTVTQSGISSLENGATHTGPAEVDTVDAFQGRQKDCIIVTCVRASA ... ... : ::: . :: . . ..:. .. . :. mKIAA0 VQGKQFRV---LFLSTVR----------TRHTCKHKQTPI-----KKKEQLL----EDST 990 1000 1010 1020 520 530 540 550 560 mKIAA0 VQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLME----NQHWYELIQDAQKRGAI--I . . :::.. . ::..::::. . ..: .: . : ..: .. .. : mKIAA0 EDLDYGFLSNYKLLNTAITRAQSLVAVVGDPVALCSIGRCRKFWERFIALCHENHSLHGI 1030 1040 1050 1060 1070 1080 570 580 590 600 610 620 mKIAA0 KTSDPNYRHDAMKILKTH---P--PATAPEAPRPQGGLPSNRLDSGLATTSFAASLYHTP . . . .:... ::. : : :.: : : . :.: .. . . :::: mKIAA0 TFEQIKAQLEALELKKTYVLNPLAPEFIPRALRLQHSGNSSRQQQ---SPPKVKSLYHPQ 1090 1100 1110 1120 1130 630 640 650 660 670 mKIAA0 SDTVTSKGPERPLLQDRLRDPRLLRRLDAEAKG---TFLKDPQPVSPQLP--GVVHLLGE :: : : .: . . .: . : .. :.:.::. : :. : mKIAA0 SDHFQSDGIVQPNPSVLIGNP-IRAYTPPPPLGPHPNLGKSPSPVQRIDPHTGTSILY-- 1140 1150 1160 1170 1180 1190 680 690 700 710 720 mKIAA0 PGFPVVFQDLGFVVPPSTAIVAPLGSHRSPMQAEPPP-AHPAAAAST-----SKRKYSDP :.:. : : :. . .: .... . ..: .: :: : . .. . : mKIAA0 --VPAVY---GGNVVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLHTHGRGSPI 1200 1210 1220 1230 1240 1250 730 740 750 760 770 mKIAA0 DAGLSHKREPRAFSGEQGRHGSVTHHVLRSTDWDRRRLDDSSAKRRQFL ::.:. : ... :..:. mKIAA0 PYGLGHH-PPVSLGQPQSQHAEKDQQEQNRNGKTDTNNPGPEINKIRTPEKKPTEPKQVD 1260 1270 1280 1290 1300 778 residues in 1 query sequences 1768239 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:24:44 2006 done: Mon Mar 27 10:24:45 2006 Scan time: 0.860 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]