FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1441.ptfa, 557 aa vs ./tmplib.26680 library 1768460 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.1803+/-0.00852; mu= -2.1438+/- 0.571 mean_var=363.3832+/-88.485, 0's: 0 Z-trim: 8 B-trim: 110 in 1/35 Lambda= 0.0673 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0211 ( 1292 res) mpm11220 (1292) 608 73 1.5e-13 mKIAA1629 ( 675 res) mbg13789 ( 675) 544 67 7.5e-12 >>mKIAA0211 ( 1292 res) mpm11220 (1292 aa) initn: 978 init1: 518 opt: 608 Z-score: 335.6 bits: 73.1 E(): 1.5e-13 Smith-Waterman score: 1071; 36.852% identity (41.365% ungapped) in 559 aa overlap (22-549:304-832) 10 20 30 40 mKIAA1 QGALKQESCSPHHSQGLTQRGPGSSPETAGIPASVS--PPQVAGVSFKQSP :. : .. . : :. .::.:. ...: mKIAA0 SHPSNSIGEPKKLAPELSACSSVPPRQRLKPAHSKLSSCVAALVALQAKRVANVTKEDQP 280 290 300 310 320 330 50 60 70 80 90 100 mKIAA1 GHQSPPASPVKAPSCKPLKEEDEGTVDKSP---PRSPQSPSSGAEA--ADEDSNDSPTSS :: . ..:.: : : .:: :. .::.. .. .: .:. ::. . mKIAA0 GHTKDSSGPTKEGSKGSPKMPKSPKSPRSPLEATRKSIKPSDSPRSICSDSSSKGSPSVA 340 350 360 370 380 390 110 120 130 140 150 mKIAA1 SSSRPL--KVRIKTIKTSCGNITRTVTRV-PSEPDP---PAPLAEGAFLAETSFLKLSP- .:: : :::::::::: :.: :::::. :. :: :: :. ..:. . .: mKIAA0 ASSPPAIPKVRIKTIKTSSGEIKRTVTRILPDPDDPSKSPAESPAGSTITEAP--SEAPG 400 410 420 430 440 450 160 170 180 190 200 210 mKIAA1 ----VTPTPEGPKVVSVQLGD--GTRLKGTVLPVATIQNASTAMLMAASVARKAVVLPGG . :. : . .... :. : : :: . : ...: . .. : . ... . mKIAA0 DEGTAMPVEEHFSEAGIHSGSPQGDR-KGDENMIKTSDSSSPCRISGSRVPKGSAL---N 460 470 480 490 500 220 230 240 250 260 mKIAA1 NATSPKTMTKSVLGLVPQT--LPKAEVRTGFSLGGQKVNGASVVMVQPSKSATGPGTAGG . .: : .. . . .: . :::: ....: ..: .:::. . .. . : .. mKIAA0 SQASKKQQSTAPQASTPAASLLPKAVHLANLNLVPHSV-AASVTAKSSAQRRSQPQVTQM 510 520 530 540 550 560 270 280 290 300 310 320 mKIAA1 SV-----ISRTQSSLVEAFNKILNSKNLLPAYRPNLSPPAEAGLALPPTGYRCLECGDAF .: .... .::.:::.:.:.: .: : :::::::.. . .: .:: :::::::: mKIAA0 TVPLVHQVKKAAPLIVEVFNKVLHSSNPVPLYAPNLSPPADSRIHVPASGYCCLECGDAF 570 580 590 600 610 620 330 340 350 360 370 380 mKIAA1 SLEKSLARHYDRRSMRIEVTCNHCARRLVFFNKCSLLLHAREHKDKGLVMQCSHLVMRPV .:::::..::.:::..::: :. :.. : :::::::: :::.::.::::::::.:...:. mKIAA0 ALEKSLSQHYSRRSVHIEVLCTLCSKTLFFFNKCSLLRHARDHKSKGLVMQCSQLLVKPI 630 640 650 660 670 680 390 400 410 420 430 440 mKIAA1 ALDQM-VGQP--DITPLLPVAVP-PVPGPLALPVLGKGEGAVTSSTITTVATEAPVLPLP . ::: :. : . .: :.: : :.: :. .... :.::: mKIAA0 SADQMFVAAPVNSTAPATPAASSSPKPSP----------------TLDNASSVIPALPLY 690 700 710 720 730 450 460 470 480 490 500 mKIAA1 TEPPAPPTASVYTCFRCLECKEQCRDKAGMAAHFQQLGPPALGSTSNVCPSCPMMLPNRC .: . . .: ::..: :: .:.:::. . : : : : :.:::.: mKIAA0 PDP----VRLIRYGTKCPECHKQMRDYMVLATHFQRTTEETEGLT---CQVCQMLLPNQC 740 750 760 770 780 510 520 530 540 550 mKIAA1 SFSAHQRTHKNRAPHVCPECGGNFLQANFQTHLREACLHFSRRVGYRCLMLNSSLEL :: ::::.: ...:. ::::: .: ::::..: :::..:.:::::. mKIAA0 SFCAHQRVHAHKSPYCCPECGVLCRSAYFQTHVKENCLHYARKVGYRCIHCGVIHLTLAL 790 800 810 820 830 840 mKIAA0 LKSHIQERHCQVFHKCAFCPMAFKTASSTMDHSTTQHPTQPHKPSQLIYKCSCEMVFNKK 850 860 870 880 890 900 >>mKIAA1629 ( 675 res) mbg13789 (675 aa) initn: 458 init1: 362 opt: 544 Z-score: 305.1 bits: 66.6 E(): 7.5e-12 Smith-Waterman score: 596; 36.939% identity (46.358% ungapped) in 379 aa overlap (33-343:306-675) 10 20 30 40 50 60 mKIAA1 ALKQESCSPHHSQGLTQRGPGSSPETAGIPASVSPPQVAGVSFKQSPGHQSPPASPVK-- :..: ..:. : :. : .: :::. mKIAA1 SSEKSDSGIAAAASSKTKPSSKLSSCIAAIAALSAKKAASDSCKE-PVANSREASPLPKE 280 290 300 310 320 330 70 80 90 100 110 mKIAA1 ---APSCKPLKEEDEGTVDKS------PPRSPQSPSSGAEAADEDSNDSPTSSSSSRPLK .:. . :... .: . : ::.: :: : ... : .::..:. . : : mKIAA1 VNDSPKAADKSPESQNLIDGTKKASLKPSDSPRSVSS--ENSSKGSPSSPVGSTPAIP-K 340 350 360 370 380 390 120 130 mKIAA1 VRIKTIKTSCGNITRTVTRV-----------PSEP----------------------DPP ::::::::: :.: :::::: ::: .:: mKIAA1 VRIKTIKTSSGEIKRTVTRVLPEVDLDSGKKPSEQAASVMASVTSLLSSSASATVLSSPP 400 410 420 430 440 450 140 150 160 170 180 mKIAA1 -APLAEGAFLAETSFLKLSP--VTPTP-------------EGPKVVSVQLGDGTRLKGTV ::: . . .: .:.: :: : : .:....:...: .:.:: mKIAA1 RAPLQTAMVTSAVSSAELTPKQVTIKPVATAFLPVSAVKTAGSQVINLKLANNTTVKATV 460 470 480 490 500 510 190 200 210 220 230 mKIAA1 LPVATIQNASTAMLMAAS-VARKAVVLPGGNATSPKTMTKSV----LGLVPQ-TLPKAEV . .:..:.::.:.. ::. . ...::.:... .. : . :.: :.:.:: . .:. mKIAA1 ISAASVQSASSAIIKAANAIQQQTVVVPASSLANAKLVPKTVHLANLNLLPQGAQATSEL 520 530 540 550 560 570 240 250 260 270 280 290 mKIAA1 RTGFSLGGQKVNGA--SVVMVQPSKSATGPGTAGGSVISRTQSSLVEAFNKILNSKNLLP : .. :... : ... :: :... .:.: :::.::::::.:.: : .: mKIAA1 RQVLTKPQQQIKQAIINAAASQPPKKVSRV-----QVVSSLQSSVVEAFNKVLSSVNPVP 580 590 600 610 620 300 310 320 330 340 350 mKIAA1 AYRPNLSPPAEAGLALPPTGYRCLECGDAFSLEKSLARHYDRRSMRIEVTCNHCARRLVF .: :::::::.::..:: ::.::::::::.:::::..::::::.:::: mKIAA1 VYTPNLSPPANAGITLPMRGYKCLECGDAFALEKSLSQHYDRRSVRIEV 630 640 650 660 670 360 370 380 390 400 410 mKIAA1 FNKCSLLLHAREHKDKGLVMQCSHLVMRPVALDQMVGQPDITPLLPVAVPPVPGPLALPV 557 residues in 1 query sequences 1768460 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:45:00 2006 done: Mon Mar 27 10:45:01 2006 Scan time: 0.730 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]