FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1604.ptfa, 907 aa
 vs ./tmplib.26680 library

1768110 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 11.0595+/-0.00584; mu= -15.6486+/- 0.385
 mean_var=306.4341+/-71.115, 0's: 0 Z-trim: 7  B-trim: 143 in 1/35
 Lambda= 0.0733

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1542  ( 1085 res)   mpg00592                  (1085)  242   40  0.0022


>>mKIAA1542  ( 1085 res)   mpg00592                       (1085 aa)
 initn: 142 init1: 102 opt: 242  Z-score: 153.0  bits: 39.8 E(): 0.0022
Smith-Waterman score: 247;  29.048% identity (33.333% ungapped) in 210 aa overlap (705-903:476-669)

          680       690       700       710       720       730    
mKIAA1 SSESSSASDSSDSDSDSSESSSESSSESSNSSSSSASTQSSTSAKGTRKKRQGKARGEEV
                                     .:: : ::.:: : : :.::..        
mKIAA1 TVTCVTVEEPGVLPSPDAPQITTHRIVEFRASSRSRSTSSSRSRKKTKKKKK--------
         450       460       470       480       490               

          740       750               760       770         780    
mKIAA1 DKLARGHQALERRREGGREDQR--------HQEGRTERARSERHRAQNSRDA--DRDPLA
        :.:: ::  .   ..: .:.         ... : .::... .:....: .  ::    
mKIAA1 -KVAREHQRTRSSTRSGSRDRTSRSVSPVAEEHTRRHRAKTKSRRSSSDRASSQDRAKRR
        500       510       520       530       540       550      

          790       800       810       820       830       840    
mKIAA1 KHMDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKKRRERRDSFSENEKQRSRNQDSDN
       :  :::..:. ..  :.::    .:. ..: : : ..  ::..:  ..... .  . ...
mKIAA1 KDRDDRDREHRRGSWGHGR---CRRKSRSRSGSPGSSSCERHESKRRKRRHSGSRSRGSS
        560       570          580       590       600       610   

          850       860       870       880       890        900   
mKIAA1 VRRKDRSKSRERSRRHSGHKGDDARCQNGAERRWEKPSRRPEQSRESKRSQDR-RREKSP
       ..:  : : :::::..  .. . .: ..  .:::.  :: :   .. .:  .: .: .::
mKIAA1 LERDRRHKHRERSRERMDKQESVTRSRE--RRRWR--SRSPSLEHRPRRPPSREKRAHSP
           620       630       640           650       660         

                                                                   
mKIAA1 TTQK                                                        
                                                                   
mKIAA1 EKKGPVREVSPAPATQGESRQDGDHSAEPPVSEVSVLPEVVSVLPEVVVADLNPPEVPPV
     670       680       690       700       710       720         




907 residues in 1 query   sequences
1768110 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:49:19 2006 done: Mon Mar 27 10:49:20 2006
 Scan time:  1.000 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]