FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0212.ptfa, 674 aa
 vs ./tmplib.26680 library

1768343 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.6530+/-0.00526; mu= 14.1056+/- 0.351
 mean_var=160.9808+/-38.860, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1011

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4030  ( 681 res)   mbg21384                   ( 681)  507   86 1.2e-17


>>mKIAA4030  ( 681 res)   mbg21384                        (681 aa)
 initn: 738 init1: 338 opt: 507  Z-score: 409.4  bits: 86.1 E(): 1.2e-17
Smith-Waterman score: 739;  42.034% identity (44.286% ungapped) in 295 aa overlap (346-637:3-285)

         320       330       340       350       360       370     
mKIAA0 NETCTAGAGSLLVEFGILSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQTGHW
                                     ::.:.  ::. :. ...:.: ..::.:: :
mKIAA4                             EYARKALDFLWEKRQRSSNLVGVTINIHTGDW
                                           10        20        30  

         380       390       400       410       420       430     
mKIAA0 VGKQSGLGAGLDSFYEYLLKSYILFGEKEDLEMFNAAYQSIQSYLRRGREACNEGEGDPP
       : :.::.:::.::.::::::.:.:.:.   :: ::. :..:. :. .           ::
mKIAA4 VRKDSGVGAGIDSYYEYLLKAYVLLGDDSFLERFNTHYDAIMRYISQ-----------PP
             40        50        60        70                   80 

         440        450       460       470       480       490    
mKIAA0 LYVNVNMFSGQL-MNTWIDSLQAFFPGLQVLIGDVEDAICLHAFYYAIWKRYGALPERYN
       : ..:.. . .:   ::.:.: ::::::::: ::.. ::  : . : . :... ::: ..
mKIAA4 LLLDVHIHKPMLNARTWMDALLAFFPGLQVLKGDIRPAIETHEMLYQVIKKHNFLPEAFT
              90       100       110       120       130       140 

          500       510       520       530       540       550    
mKIAA0 WQLQAPDVLFYPLRPELVESTYLLYQATKNPFYLHVGMDILQSLEKYTKVKCGYATLHHV
        ....  .  .:::::..::::.::.:: .:.::.::  ....:.::..: ::.:... :
mKIAA4 TDFRVHWAQ-HPLRPEFAESTYFLYKATGDPYYLEVGKTLIENLNKYARVPCGFAAMKDV
             150        160       170       180       190       200

          560       570       580       590       600         610  
mKIAA0 IDKSKEDRMESFFLSETCKYLYLLFDEENPVHKSGTRYMFTTEGHIISV--DKRLRELPW
          :.::::.::::.:  ::::::: ... .  .   :.::::.:.. .  .   : .  
mKIAA4 RTGSHEDRMDSFFLAEMFKYLYLLFADKEDIIFDIEDYIFTTEAHLLPLWLSTTNRSISK
              210       220       230       240       250       260

            620       630       640       650       660       670  
mKIAA0 KEFFSEDGERDQEEKFVHRPKSQELRVINSSSNCNRVPDERRYSLPLKSIYMRQIDQMVG
       :.  ::  : :. .     :..: :                                   
mKIAA4 KNTTSEYTELDDSNFDWTCPNTQILFPNDPLYAQSIREPLKNVVDKSCPRGIIRVEESFR
              270       280       290       300       310       320




674 residues in 1 query   sequences
1768343 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:14:46 2006 done: Mon Mar 27 10:14:47 2006
 Scan time:  0.810 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]